HEADER PROTEIN BINDING 03-JUL-08 3DOA TITLE THE CRYSTAL STRUCTURE OF THE FIBRINOGEN BINDING PROTEIN FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRINOGEN BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-288; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS MU50; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: UBSP. AUREUS MU50; SOURCE 5 GENE: SAV1208; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS THE FIBRINOGEN BINDING PROTEIN, STRUCTURAL GENOMICS, MCSG., PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,R.WU,L.FREEMAN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 21-FEB-24 3DOA 1 REMARK REVDAT 3 13-JUL-11 3DOA 1 VERSN REVDAT 2 24-FEB-09 3DOA 1 VERSN REVDAT 1 30-SEP-08 3DOA 0 JRNL AUTH R.ZHANG,R.WU,L.FREEMAN,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE FIBRINOGEN BINDING PROTEIN FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED 2008 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 10541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 530 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32000 REMARK 3 B22 (A**2) : 1.32000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.633 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.357 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2233 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1542 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3014 ; 2.282 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3770 ; 1.151 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 9.482 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;38.024 ;24.690 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 411 ;20.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.240 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2434 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 439 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 580 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1709 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1084 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1283 ; 0.103 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.041 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.456 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1696 ; 1.112 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 534 ; 0.163 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2186 ; 1.415 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1006 ; 2.286 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 828 ; 3.452 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 146 REMARK 3 RESIDUE RANGE : A 152 A 200 REMARK 3 RESIDUE RANGE : A 201 A 240 REMARK 3 RESIDUE RANGE : A 241 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 46.6290 24.7330 73.3410 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: -0.0037 REMARK 3 T33: -0.0824 T12: -0.0177 REMARK 3 T13: -0.0579 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.8793 L22: 1.9509 REMARK 3 L33: 3.0924 L12: 0.3131 REMARK 3 L13: -0.5539 L23: -1.4214 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.0953 S13: -0.0533 REMARK 3 S21: -0.1389 S22: 0.0466 S23: 0.1299 REMARK 3 S31: 0.3454 S32: -0.0021 S33: -0.0882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI CHANNEL 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 87.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, 45% TACSIMATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 51.13450 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.45550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.72775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.13450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.18325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.18325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.13450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.72775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 51.13450 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.45550 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.13450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 83.45550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.13450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 125.18325 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 41.72775 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.13450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 41.72775 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 125.18325 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.13450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.13450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.45550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROTEIN EXISTED AS MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 318 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 64 REMARK 465 TYR A 65 REMARK 465 ASP A 66 REMARK 465 ASN A 67 REMARK 465 PRO A 68 REMARK 465 PHE A 69 REMARK 465 ASN A 70 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 ASN A 149 REMARK 465 HIS A 150 REMARK 465 TYR A 151 REMARK 465 LYS A 242 REMARK 465 ARG A 280 REMARK 465 GLY A 281 REMARK 465 GLU A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 ARG A 285 REMARK 465 VAL A 286 REMARK 465 LYS A 287 REMARK 465 GLN A 288 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 167 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 HIS A 241 O PHE A 259 1.76 REMARK 500 NE2 HIS A 241 O PHE A 259 1.86 REMARK 500 OG SER A 211 ND2 ASN A 257 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 4 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 173.20 -59.53 REMARK 500 THR A 20 -20.53 92.81 REMARK 500 LYS A 25 144.24 -176.69 REMARK 500 ASN A 41 50.16 32.44 REMARK 500 SER A 56 136.77 -37.13 REMARK 500 ARG A 57 172.51 176.83 REMARK 500 ALA A 162 173.73 -52.11 REMARK 500 PRO A 164 -80.09 -45.88 REMARK 500 THR A 165 155.12 89.99 REMARK 500 HIS A 167 76.65 46.82 REMARK 500 TYR A 252 -168.25 -165.18 REMARK 500 ASN A 257 -11.63 -46.99 REMARK 500 ASP A 261 -85.72 -94.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 145 PRO A 146 -141.36 REMARK 500 GLY A 157 PHE A 158 -136.01 REMARK 500 ALA A 187 GLY A 188 -44.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85800.6 RELATED DB: TARGETDB DBREF 3DOA A 1 288 UNP Q99UR0 Q99UR0_STAAM 1 288 SEQRES 1 A 288 MET ALA TYR ASP GLY LEU PHE THR LYS LYS MET VAL GLU SEQRES 2 A 288 SER LEU GLN PHE LEU THR THR GLY ARG VAL HIS LYS ILE SEQRES 3 A 288 ASN GLN PRO ASP ASN ASP THR ILE LEU MET VAL VAL ARG SEQRES 4 A 288 GLN ASN ARG GLN ASN HIS GLN LEU LEU LEU SER ILE HIS SEQRES 5 A 288 PRO ASN PHE SER ARG LEU GLN LEU THR THR LYS LYS TYR SEQRES 6 A 288 ASP ASN PRO PHE ASN PRO PRO MET PHE ALA ARG VAL PHE SEQRES 7 A 288 ARG LYS HIS LEU GLU GLY GLY ILE ILE GLU SER ILE LYS SEQRES 8 A 288 GLN ILE GLY ASN ASP ARG ARG ILE GLU ILE ASP ILE LYS SEQRES 9 A 288 SER LYS ASP GLU ILE GLY ASP THR ILE TYR ARG THR VAL SEQRES 10 A 288 ILE LEU GLU ILE MET GLY LYS HIS SER ASN LEU ILE LEU SEQRES 11 A 288 VAL ASP GLU ASN ARG LYS ILE ILE GLU GLY PHE LYS HIS SEQRES 12 A 288 LEU THR PRO ASN THR ASN HIS TYR ARG THR VAL MET PRO SEQRES 13 A 288 GLY PHE ASN TYR GLU ALA PRO PRO THR GLN HIS LYS ILE SEQRES 14 A 288 ASN PRO TYR ASP ILE THR GLY ALA GLU VAL LEU LYS TYR SEQRES 15 A 288 ILE ASP PHE ASN ALA GLY ASN ILE ALA LYS GLN LEU LEU SEQRES 16 A 288 ASN GLN PHE GLU GLY PHE SER PRO LEU ILE THR ASN GLU SEQRES 17 A 288 ILE VAL SER ARG ARG GLN PHE MET THR SER SER THR LEU SEQRES 18 A 288 PRO GLU ALA PHE ASP GLU VAL MET ALA GLU THR LYS LEU SEQRES 19 A 288 PRO PRO THR PRO ILE PHE HIS LYS ASN HIS GLU THR GLY SEQRES 20 A 288 LYS GLU ASP PHE TYR PHE ILE LYS LEU ASN GLN PHE ASN SEQRES 21 A 288 ASP ASP THR VAL THR TYR ASP SER LEU ASN ASP LEU LEU SEQRES 22 A 288 ASP ARG PHE TYR ASP ALA ARG GLY GLU ARG GLU ARG VAL SEQRES 23 A 288 LYS GLN FORMUL 2 HOH *30(H2 O) HELIX 1 1 ASP A 4 GLN A 16 1 13 HELIX 2 2 PHE A 17 THR A 19 5 3 HELIX 3 3 PRO A 72 GLU A 83 1 12 HELIX 4 4 MET A 122 SER A 126 5 5 HELIX 5 5 ASN A 170 ILE A 174 5 5 HELIX 6 6 THR A 175 LEU A 180 1 6 HELIX 7 7 LYS A 181 ILE A 183 5 3 HELIX 8 8 ASP A 184 GLY A 188 5 5 HELIX 9 9 ASN A 189 PHE A 198 1 10 HELIX 10 10 SER A 202 SER A 211 1 10 HELIX 11 11 SER A 219 LYS A 233 1 15 HELIX 12 12 SER A 268 TYR A 277 1 10 SHEET 1 A 4 ARG A 22 ASP A 30 0 SHEET 2 A 4 THR A 33 GLN A 40 -1 O ARG A 39 N ARG A 22 SHEET 3 A 4 GLN A 43 SER A 50 -1 O LEU A 49 N ILE A 34 SHEET 4 A 4 ARG A 57 THR A 61 -1 O GLN A 59 N LEU A 48 SHEET 1 B 5 ILE A 86 GLN A 92 0 SHEET 2 B 5 ARG A 98 LYS A 106 -1 O ASP A 102 N SER A 89 SHEET 3 B 5 THR A 112 GLU A 120 -1 O ILE A 113 N SER A 105 SHEET 4 B 5 ASN A 127 ASP A 132 -1 O ILE A 129 N ILE A 118 SHEET 5 B 5 ILE A 137 GLY A 140 -1 O ILE A 138 N LEU A 130 SHEET 1 C 3 ASP A 250 TYR A 252 0 SHEET 2 C 3 ILE A 239 HIS A 241 -1 N HIS A 241 O ASP A 250 SHEET 3 C 3 VAL A 264 THR A 265 -1 O VAL A 264 N PHE A 240 CISPEP 1 ASN A 260 ASP A 261 0 15.62 CRYST1 102.269 102.269 166.911 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005991 0.00000