HEADER PROTEIN BINDING 03-JUL-08 3DOB TITLE PEPTIDE-BINDING DOMAIN OF HEAT SHOCK 70 KDA PROTEIN F44E5.5 FROM TITLE 2 C.ELEGANS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN F44E5.5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PEPTIDE-BINDING DOMAIN, RESIDUES 369-544; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 STRAIN: BRISTOL N2; SOURCE 6 GENE: F44E5.4, F44E5.5; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, APC90015.11, PEPTIDE-BINDING DOMAIN, HSP70, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, ATP-BINDING, NUCLEOTIDE-BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,C.HATZOS,M.GU,R.ZHANG,C.VOISINE,R.I.MORIMOTO,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 30-AUG-23 3DOB 1 REMARK REVDAT 5 20-OCT-21 3DOB 1 REMARK SEQADV REVDAT 4 25-OCT-17 3DOB 1 REMARK REVDAT 3 13-JUL-11 3DOB 1 VERSN REVDAT 2 24-FEB-09 3DOB 1 VERSN REVDAT 1 22-JUL-08 3DOB 0 JRNL AUTH J.OSIPIUK,C.HATZOS,M.GU,R.ZHANG,C.VOISINE,R.I.MORIMOTO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF PEPTIDE-BINDING DOMAIN OF HEAT JRNL TITL 2 SHOCK 70 KDA PROTEIN F44E5.5 FROM C.ELEGANS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1266 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 62.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2309 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3113 ; 1.582 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 6.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;39.992 ;24.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;17.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1771 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 920 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1530 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1501 ; 0.781 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2355 ; 1.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 884 ; 2.111 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 758 ; 3.223 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 396 A 420 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9841 4.2520 -4.9896 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.0020 REMARK 3 T33: -0.0670 T12: -0.0212 REMARK 3 T13: 0.0454 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.6378 L22: 13.6973 REMARK 3 L33: 2.9967 L12: -3.8382 REMARK 3 L13: -0.3334 L23: 3.9469 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.1758 S13: 0.1906 REMARK 3 S21: -0.2614 S22: -0.0023 S23: -0.1394 REMARK 3 S31: 0.2860 S32: 0.0908 S33: -0.0215 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 421 A 443 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4237 12.3012 6.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.1562 T22: -0.0482 REMARK 3 T33: 0.0107 T12: -0.0091 REMARK 3 T13: 0.0180 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.9468 L22: 2.6147 REMARK 3 L33: 0.7026 L12: -1.2976 REMARK 3 L13: -0.0208 L23: 0.7949 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.0270 S13: 0.0368 REMARK 3 S21: -0.1457 S22: 0.0324 S23: 0.1721 REMARK 3 S31: -0.0684 S32: 0.0612 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 444 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6028 9.8440 -5.7251 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: -0.0695 REMARK 3 T33: -0.0223 T12: -0.0273 REMARK 3 T13: -0.0892 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.2825 L22: 3.7179 REMARK 3 L33: 15.3221 L12: 0.0165 REMARK 3 L13: -2.5335 L23: -6.0361 REMARK 3 S TENSOR REMARK 3 S11: 0.1635 S12: 0.3000 S13: -0.0584 REMARK 3 S21: -0.2874 S22: 0.1182 S23: 0.4893 REMARK 3 S31: -0.0966 S32: -0.4169 S33: -0.2818 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 461 A 493 REMARK 3 ORIGIN FOR THE GROUP (A): 46.7190 8.4038 9.6346 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: -0.0672 REMARK 3 T33: 0.0249 T12: -0.0044 REMARK 3 T13: 0.0451 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 1.1096 L22: 6.4256 REMARK 3 L33: 2.8324 L12: 0.5948 REMARK 3 L13: 1.2259 L23: 3.1941 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: 0.0857 S13: -0.1124 REMARK 3 S21: 0.2211 S22: 0.1276 S23: -0.1545 REMARK 3 S31: 0.0474 S32: -0.1222 S33: -0.1815 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 494 A 512 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4145 3.1213 8.4694 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: -0.0482 REMARK 3 T33: 0.0578 T12: 0.0057 REMARK 3 T13: 0.0161 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 0.8838 L22: 1.4771 REMARK 3 L33: 4.9329 L12: 0.2085 REMARK 3 L13: 0.2730 L23: -0.5582 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.1500 S13: -0.0579 REMARK 3 S21: -0.0917 S22: 0.1547 S23: 0.0419 REMARK 3 S31: 0.4366 S32: -0.0035 S33: -0.1762 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 513 A 535 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3029 9.5845 -17.3316 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.0258 REMARK 3 T33: -0.2894 T12: -0.0711 REMARK 3 T13: -0.0264 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 7.1064 L22: 31.7863 REMARK 3 L33: 6.4181 L12: 7.6204 REMARK 3 L13: 4.6952 L23: 3.1620 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: 1.0539 S13: 0.6970 REMARK 3 S21: -1.8969 S22: 0.3094 S23: 1.2720 REMARK 3 S31: 0.3656 S32: 0.1725 S33: -0.3172 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 536 A 544 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4903 20.2017 -0.3203 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: -0.0976 REMARK 3 T33: 0.1814 T12: -0.0730 REMARK 3 T13: 0.1226 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 4.7679 L22: 7.8371 REMARK 3 L33: 7.8980 L12: -2.1340 REMARK 3 L13: -2.0300 L23: -4.2914 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.0013 S13: 1.2389 REMARK 3 S21: -0.4481 S22: 0.2952 S23: -0.7219 REMARK 3 S31: -0.7569 S32: 0.1210 S33: -0.3423 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 395 B 420 REMARK 3 ORIGIN FOR THE GROUP (A): 62.8668 10.9953 -1.6821 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: -0.0607 REMARK 3 T33: 0.0246 T12: -0.0777 REMARK 3 T13: 0.0985 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.7316 L22: 1.3885 REMARK 3 L33: 3.2977 L12: -0.8402 REMARK 3 L13: -3.1797 L23: -0.1240 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: 0.3838 S13: 0.2345 REMARK 3 S21: -0.1242 S22: -0.2156 S23: -0.0406 REMARK 3 S31: -0.1464 S32: 0.0414 S33: 0.1129 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 421 B 444 REMARK 3 ORIGIN FOR THE GROUP (A): 63.7358 -2.6219 -0.6073 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0092 REMARK 3 T33: -0.0269 T12: 0.0158 REMARK 3 T13: 0.0862 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.7883 L22: 3.8607 REMARK 3 L33: 1.9066 L12: 1.6962 REMARK 3 L13: 0.1055 L23: 0.8590 REMARK 3 S TENSOR REMARK 3 S11: -0.1987 S12: 0.1572 S13: -0.0500 REMARK 3 S21: -0.3491 S22: 0.1259 S23: -0.0326 REMARK 3 S31: 0.1190 S32: 0.3101 S33: 0.0728 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 445 B 456 REMARK 3 ORIGIN FOR THE GROUP (A): 69.6427 9.1927 -9.0575 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.0451 REMARK 3 T33: 0.0259 T12: -0.1102 REMARK 3 T13: 0.1797 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 3.2613 L22: 5.2937 REMARK 3 L33: 17.5271 L12: 0.0423 REMARK 3 L13: -4.4262 L23: -7.8662 REMARK 3 S TENSOR REMARK 3 S11: 0.2540 S12: 0.3416 S13: 0.4298 REMARK 3 S21: -0.1363 S22: -0.3535 S23: -0.3447 REMARK 3 S31: -0.8549 S32: 1.1482 S33: 0.0996 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 457 B 492 REMARK 3 ORIGIN FOR THE GROUP (A): 64.9724 -2.1798 4.3023 REMARK 3 T TENSOR REMARK 3 T11: 0.0772 T22: 0.0390 REMARK 3 T33: 0.0478 T12: 0.0062 REMARK 3 T13: 0.0725 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 2.3789 L22: 3.2468 REMARK 3 L33: 2.1632 L12: 2.4708 REMARK 3 L13: 1.1053 L23: 0.0884 REMARK 3 S TENSOR REMARK 3 S11: -0.1839 S12: 0.1160 S13: 0.2511 REMARK 3 S21: -0.1702 S22: 0.0366 S23: 0.1656 REMARK 3 S31: 0.1585 S32: 0.4974 S33: 0.1473 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 493 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): 67.6260 -2.0603 8.7037 REMARK 3 T TENSOR REMARK 3 T11: -0.0210 T22: 0.0372 REMARK 3 T33: 0.0331 T12: 0.1090 REMARK 3 T13: 0.0081 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 7.5281 L22: 6.0541 REMARK 3 L33: 7.3445 L12: 1.5598 REMARK 3 L13: 0.0640 L23: 1.6516 REMARK 3 S TENSOR REMARK 3 S11: -0.1311 S12: 0.3957 S13: 0.2669 REMARK 3 S21: -0.5478 S22: 0.1581 S23: -0.4652 REMARK 3 S31: -0.2657 S32: 0.5843 S33: -0.0270 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 509 B 532 REMARK 3 ORIGIN FOR THE GROUP (A): 68.3679 18.2198 -10.7193 REMARK 3 T TENSOR REMARK 3 T11: 0.1137 T22: -0.0557 REMARK 3 T33: 0.0762 T12: -0.0233 REMARK 3 T13: 0.0108 T23: 0.1029 REMARK 3 L TENSOR REMARK 3 L11: 6.2885 L22: 6.2736 REMARK 3 L33: 13.3769 L12: 4.9990 REMARK 3 L13: 4.9705 L23: 4.7468 REMARK 3 S TENSOR REMARK 3 S11: 0.4168 S12: 0.2401 S13: -0.4603 REMARK 3 S21: 0.0152 S22: -0.4320 S23: -0.9016 REMARK 3 S31: 1.1185 S32: 0.4025 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 533 B 544 REMARK 3 ORIGIN FOR THE GROUP (A): 60.1570 -0.9105 -12.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.4033 T22: 0.0108 REMARK 3 T33: -0.1112 T12: -0.0741 REMARK 3 T13: 0.0875 T23: -0.1249 REMARK 3 L TENSOR REMARK 3 L11: 9.1853 L22: 12.8753 REMARK 3 L33: 21.8907 L12: 6.6923 REMARK 3 L13: 2.6655 L23: -11.0551 REMARK 3 S TENSOR REMARK 3 S11: -0.3428 S12: 1.1390 S13: 0.0097 REMARK 3 S21: -1.1406 S22: 0.8255 S23: 0.8625 REMARK 3 S31: 0.2199 S32: 1.1026 S33: -0.4826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19448 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.90500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OP6.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS BUFFER, 0.8 M AMMONIUM REMARK 280 SULFATE, PH 8.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.78533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.89267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.89267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.78533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PUTATIVE MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 393 REMARK 465 ASN A 394 REMARK 465 ALA A 395 REMARK 465 LYS A 508 REMARK 465 GLY A 509 REMARK 465 ARG A 510 REMARK 465 LEU A 511 REMARK 465 SER B 393 REMARK 465 ASN B 394 REMARK 465 GLN B 538 REMARK 465 ALA B 539 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 426 S2 BME A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 513 CD GLN A 513 OE1 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 482 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 407 127.24 -36.97 REMARK 500 ARG B 417 131.58 -38.96 REMARK 500 ASN B 418 9.81 85.02 REMARK 500 ASN B 435 18.61 59.36 REMARK 500 SER B 463 -164.07 -122.75 REMARK 500 GLU B 507 56.36 -109.61 REMARK 500 LYS B 508 121.91 -39.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OP6 RELATED DB: PDB REMARK 900 PEPTIDE-BINDING DOMAIN OF HEAT SHOCK 70 KDA PROTEIN D PRECURSOR REMARK 900 FROM C.ELEGANS REMARK 900 RELATED ID: 1DKY RELATED DB: PDB REMARK 900 SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH SUBSTRATE PEPTIDE REMARK 900 RELATED ID: APC90015.11 RELATED DB: TARGETDB DBREF 3DOB A 396 544 UNP Q9XTL8 Q9XTL8_CAEEL 396 544 DBREF 3DOB B 396 544 UNP Q9XTL8 Q9XTL8_CAEEL 396 544 SEQADV 3DOB SER A 393 UNP Q9XTL8 EXPRESSION TAG SEQADV 3DOB ASN A 394 UNP Q9XTL8 EXPRESSION TAG SEQADV 3DOB ALA A 395 UNP Q9XTL8 EXPRESSION TAG SEQADV 3DOB ASN A 480 UNP Q9XTL8 ASP 480 ENGINEERED MUTATION SEQADV 3DOB SER B 393 UNP Q9XTL8 EXPRESSION TAG SEQADV 3DOB ASN B 394 UNP Q9XTL8 EXPRESSION TAG SEQADV 3DOB ALA B 395 UNP Q9XTL8 EXPRESSION TAG SEQADV 3DOB ASN B 480 UNP Q9XTL8 ASP 480 ENGINEERED MUTATION SEQRES 1 A 152 SER ASN ALA ASP VAL ALA PRO LEU SER LEU GLY ILE GLU SEQRES 2 A 152 THR ALA GLY GLY VAL MET THR ASN LEU ILE ASP ARG ASN SEQRES 3 A 152 THR ARG ILE PRO THR LYS ALA CYS LYS THR PHE THR THR SEQRES 4 A 152 TYR ALA ASP ASN GLN PRO GLY VAL SER ILE GLN VAL TYR SEQRES 5 A 152 GLU GLY GLU ARG ALA MET THR ARG ASP ASN HIS ARG LEU SEQRES 6 A 152 GLY THR PHE GLU LEU SER GLY ILE PRO PRO ALA PRO ARG SEQRES 7 A 152 GLY VAL PRO GLN ILE GLU VAL THR PHE ASN ILE ASP ALA SEQRES 8 A 152 ASN GLY ILE LEU ASN VAL SER ALA GLU ASP LYS SER THR SEQRES 9 A 152 GLY LYS SER ASN ARG ILE THR ILE GLN ASN GLU LYS GLY SEQRES 10 A 152 ARG LEU THR GLN SER ASP ILE ASP ARG MET VAL HIS GLU SEQRES 11 A 152 ALA LYS GLN PHE GLU LYS GLU ASP GLY GLU GLN ARG GLU SEQRES 12 A 152 ARG VAL GLN ALA ARG ASN GLN LEU GLU SEQRES 1 B 152 SER ASN ALA ASP VAL ALA PRO LEU SER LEU GLY ILE GLU SEQRES 2 B 152 THR ALA GLY GLY VAL MET THR ASN LEU ILE ASP ARG ASN SEQRES 3 B 152 THR ARG ILE PRO THR LYS ALA CYS LYS THR PHE THR THR SEQRES 4 B 152 TYR ALA ASP ASN GLN PRO GLY VAL SER ILE GLN VAL TYR SEQRES 5 B 152 GLU GLY GLU ARG ALA MET THR ARG ASP ASN HIS ARG LEU SEQRES 6 B 152 GLY THR PHE GLU LEU SER GLY ILE PRO PRO ALA PRO ARG SEQRES 7 B 152 GLY VAL PRO GLN ILE GLU VAL THR PHE ASN ILE ASP ALA SEQRES 8 B 152 ASN GLY ILE LEU ASN VAL SER ALA GLU ASP LYS SER THR SEQRES 9 B 152 GLY LYS SER ASN ARG ILE THR ILE GLN ASN GLU LYS GLY SEQRES 10 B 152 ARG LEU THR GLN SER ASP ILE ASP ARG MET VAL HIS GLU SEQRES 11 B 152 ALA LYS GLN PHE GLU LYS GLU ASP GLY GLU GLN ARG GLU SEQRES 12 B 152 ARG VAL GLN ALA ARG ASN GLN LEU GLU HET BME A 601 4 HET BME B 602 4 HETNAM BME BETA-MERCAPTOETHANOL FORMUL 3 BME 2(C2 H6 O S) FORMUL 5 HOH *108(H2 O) HELIX 1 1 MET A 450 ASN A 454 5 5 HELIX 2 2 THR A 512 PHE A 526 1 15 HELIX 3 3 PHE A 526 ARG A 536 1 11 HELIX 4 4 MET B 450 ASN B 454 5 5 HELIX 5 5 THR B 512 PHE B 526 1 15 HELIX 6 6 PHE B 526 ARG B 536 1 11 SHEET 1 A 4 VAL A 410 ILE A 415 0 SHEET 2 A 4 LEU A 402 THR A 406 -1 N LEU A 402 O ILE A 415 SHEET 3 A 4 GLY A 438 GLU A 445 -1 O TYR A 444 N GLY A 403 SHEET 4 A 4 HIS A 455 SER A 463 -1 O LEU A 457 N VAL A 443 SHEET 1 B 5 SER A 499 ILE A 504 0 SHEET 2 B 5 LEU A 487 ASP A 493 -1 N LEU A 487 O ILE A 504 SHEET 3 B 5 ILE A 475 ILE A 481 -1 N ASN A 480 O ASN A 488 SHEET 4 B 5 THR A 423 THR A 431 -1 N PHE A 429 O ILE A 475 SHEET 5 B 5 GLN A 542 LEU A 543 1 O LEU A 543 N THR A 430 SHEET 1 C 4 VAL B 410 ILE B 415 0 SHEET 2 C 4 LEU B 402 THR B 406 -1 N LEU B 402 O LEU B 414 SHEET 3 C 4 VAL B 439 GLU B 445 -1 O TYR B 444 N GLY B 403 SHEET 4 C 4 HIS B 455 LEU B 462 -1 O PHE B 460 N ILE B 441 SHEET 1 D 5 SER B 499 ILE B 504 0 SHEET 2 D 5 LEU B 487 ASP B 493 -1 N LEU B 487 O ILE B 504 SHEET 3 D 5 ILE B 475 ILE B 481 -1 N THR B 478 O SER B 490 SHEET 4 D 5 THR B 423 THR B 431 -1 N PHE B 429 O ILE B 475 SHEET 5 D 5 GLN B 542 LEU B 543 1 O LEU B 543 N THR B 430 CISPEP 1 ILE A 421 PRO A 422 0 5.07 CISPEP 2 ILE B 421 PRO B 422 0 5.74 SITE 1 AC1 3 CYS A 426 LYS A 427 LYS B 424 SITE 1 AC2 4 LYS A 424 CYS B 426 LYS B 427 GLU B 476 CRYST1 102.009 102.009 80.678 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009803 0.005660 0.000000 0.00000 SCALE2 0.000000 0.011320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012395 0.00000