HEADER HYDROLASE 04-JUL-08 3DOH TITLE CRYSTAL STRUCTURE OF A THERMOSTABLE ESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 16-395; COMPND 5 EC: 3.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM_0033; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-24D KEYWDS ALPHA-BETA HYDROLASE, BETA SHEET, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LEVISSON,L.SUN,S.HENDRIKS,B.W.DIJKSTRA,J.VAN DER OOST,S.W.M.KENGEN REVDAT 2 20-MAR-24 3DOH 1 REMARK REVDAT 1 17-FEB-09 3DOH 0 JRNL AUTH M.LEVISSON,L.SUN,S.HENDRIKS,P.SWINKELS,T.AKVELD,J.B.BULTEMA, JRNL AUTH 2 A.BARENDREGT,R.H.H.VAN DEN HEUVEL,B.W.DIJKSTRA, JRNL AUTH 3 J.VAN DER OOST,S.W.M.KENGEN JRNL TITL CRYSTAL STRUCTURE AND BIOCHEMICAL PROPERTIES OF A NOVEL JRNL TITL 2 THERMOSTABLE ESTERASE CONTAINING AN IMMUNOGLOBULIN-LIKE JRNL TITL 3 DOMAIN. JRNL REF J.MOL.BIOL. V. 385 949 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19013466 JRNL DOI 10.1016/J.JMB.2008.10.075 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 28373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2092 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.693 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.245 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6185 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8427 ; 1.887 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 745 ;10.304 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;35.953 ;24.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1011 ;20.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4719 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3016 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4127 ; 0.329 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 323 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.285 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.077 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3841 ; 0.931 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6111 ; 1.639 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2706 ; 2.007 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2316 ; 3.242 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9791, 0.9793, 0.9757 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 1M LITHIUM SULPHATE REMARK 280 MONOHYDRATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.07850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.57309 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 102.06133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.07850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.57309 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 102.06133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.07850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.57309 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 102.06133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.07850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.57309 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 102.06133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.07850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.57309 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.06133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.07850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.57309 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 102.06133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.14618 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 204.12267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.14618 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 204.12267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.14618 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 204.12267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.14618 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 204.12267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.14618 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 204.12267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.14618 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 204.12267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 16 REMARK 465 GLU A 17 REMARK 465 ASP A 18 REMARK 465 VAL A 19 REMARK 465 THR A 20 REMARK 465 GLN B 16 REMARK 465 GLU B 17 REMARK 465 ASP B 18 REMARK 465 VAL B 19 REMARK 465 THR B 20 REMARK 465 ARG B 249 REMARK 465 GLU B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 395 O REMARK 470 ARG B 395 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 102.89 -177.02 REMARK 500 HIS A 106 59.91 -91.81 REMARK 500 MET A 121 106.56 1.46 REMARK 500 ASP A 150 137.53 -179.33 REMARK 500 ILE A 155 -34.26 108.59 REMARK 500 VAL A 171 127.35 -28.25 REMARK 500 TYR A 206 -52.26 -125.61 REMARK 500 CYS A 229 117.79 173.06 REMARK 500 SER A 240 -146.05 -137.97 REMARK 500 SER A 241 155.79 166.08 REMARK 500 THR A 244 57.76 -63.44 REMARK 500 ASP A 248 127.72 165.72 REMARK 500 ARG A 249 70.61 -102.31 REMARK 500 GLU A 250 -61.90 -145.58 REMARK 500 PRO A 252 49.11 -76.27 REMARK 500 ARG A 279 54.21 -141.63 REMARK 500 SER A 286 -112.19 68.19 REMARK 500 PHE A 299 57.09 -143.18 REMARK 500 CYS A 310 78.96 35.55 REMARK 500 ASP B 66 -25.92 172.39 REMARK 500 TYR B 77 -163.50 -179.71 REMARK 500 ASN B 79 167.60 179.16 REMARK 500 SER B 81 -86.56 -112.46 REMARK 500 LEU B 84 34.39 -94.40 REMARK 500 PRO B 114 49.62 -86.09 REMARK 500 ASN B 115 -138.97 -140.06 REMARK 500 PHE B 116 56.17 -109.49 REMARK 500 ILE B 155 7.05 55.98 REMARK 500 GLU B 168 -67.65 -23.97 REMARK 500 THR B 169 141.81 157.95 REMARK 500 ASN B 184 126.41 -35.20 REMARK 500 ASP B 186 42.02 -100.21 REMARK 500 THR B 203 -6.77 -145.38 REMARK 500 TYR B 206 -53.53 -132.44 REMARK 500 PRO B 238 150.72 -48.42 REMARK 500 ASN B 239 -9.17 67.39 REMARK 500 THR B 244 41.66 -71.90 REMARK 500 SER B 286 -106.93 58.23 REMARK 500 HIS B 330 139.93 -170.32 REMARK 500 LYS B 355 47.16 76.36 REMARK 500 PRO B 373 6.07 -65.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 120 MET A 121 138.10 REMARK 500 MET A 121 LYS A 122 143.06 REMARK 500 ASP A 137 GLY A 138 -43.22 REMARK 500 PRO A 228 CYS A 229 -114.19 REMARK 500 CYS A 236 PRO A 237 -148.52 REMARK 500 PRO A 237 PRO A 238 -132.23 REMARK 500 GLY A 312 GLY A 313 -125.58 REMARK 500 GLY A 353 GLY A 354 129.79 REMARK 500 THR B 64 GLY B 65 -53.00 REMARK 500 TYR B 77 ALA B 78 -149.74 REMARK 500 GLY B 82 GLY B 83 142.32 REMARK 500 GLY B 113 PRO B 114 -142.30 REMARK 500 LYS B 181 ASP B 182 -65.53 REMARK 500 ASP B 182 VAL B 183 -147.75 REMARK 500 HIS B 196 GLY B 197 77.75 REMARK 500 GLY B 353 GLY B 354 135.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DOI RELATED DB: PDB DBREF 3DOH A 16 395 UNP Q9WXP0 Q9WXP0_THEMA 16 395 DBREF 3DOH B 16 395 UNP Q9WXP0 Q9WXP0_THEMA 16 395 SEQRES 1 A 380 GLN GLU ASP VAL THR VAL LYS SER VAL THR LEU ILE THR SEQRES 2 A 380 LYS VAL PHE PRO GLU GLY GLU LYS VAL CYS ALA VAL VAL SEQRES 3 A 380 ILE GLU TYR PRO VAL GLU ILE ASP GLY GLN LYS LEU SER SEQRES 4 A 380 PRO ASP GLN PHE SER VAL LYS VAL LYS THR GLY ASP THR SEQRES 5 A 380 TYR SER SER ARG THR ILE THR LYS VAL TYR ALA ASN ASN SEQRES 6 A 380 SER GLY GLY LEU SER PHE SER ILE PHE ASN ASN ARG GLY SEQRES 7 A 380 LYS TYR VAL VAL LEU GLU LEU SER THR GLU ASP LEU HIS SEQRES 8 A 380 SER ASN THR ILE VAL PHE GLY PRO ASN PHE LEU ASN THR SEQRES 9 A 380 ARG MET LYS LEU ASP TYR ILE VAL SER GLN LEU VAL PRO SEQRES 10 A 380 ILE PHE ASP VAL ASP GLY ASN GLU VAL GLU PRO PHE THR SEQRES 11 A 380 SER LYS GLN THR ASP GLU LYS HIS LEU ILE ILE ASP ASP SEQRES 12 A 380 PHE LEU ALA PHE THR PHE LYS ASP PRO GLU THR GLY VAL SEQRES 13 A 380 GLU ILE PRO TYR ARG LEU PHE VAL PRO LYS ASP VAL ASN SEQRES 14 A 380 PRO ASP ARG LYS TYR PRO LEU VAL VAL PHE LEU HIS GLY SEQRES 15 A 380 ALA GLY GLU ARG GLY THR ASP ASN TYR LEU GLN VAL ALA SEQRES 16 A 380 GLY ASN ARG GLY ALA VAL VAL TRP ALA GLN PRO ARG TYR SEQRES 17 A 380 GLN VAL VAL HIS PRO CYS PHE VAL LEU ALA PRO GLN CYS SEQRES 18 A 380 PRO PRO ASN SER SER TRP SER THR LEU PHE THR ASP ARG SEQRES 19 A 380 GLU ASN PRO PHE ASN PRO GLU LYS PRO LEU LEU ALA VAL SEQRES 20 A 380 ILE LYS ILE ILE ARG LYS LEU LEU ASP GLU TYR ASN ILE SEQRES 21 A 380 ASP GLU ASN ARG ILE TYR ILE THR GLY LEU SER MET GLY SEQRES 22 A 380 GLY TYR GLY THR TRP THR ALA ILE MET GLU PHE PRO GLU SEQRES 23 A 380 LEU PHE ALA ALA ALA ILE PRO ILE CYS GLY GLY GLY ASP SEQRES 24 A 380 VAL SER LYS VAL GLU ARG ILE LYS ASP ILE PRO ILE TRP SEQRES 25 A 380 VAL PHE HIS ALA GLU ASP ASP PRO VAL VAL PRO VAL GLU SEQRES 26 A 380 ASN SER ARG VAL LEU VAL LYS LYS LEU ALA GLU ILE GLY SEQRES 27 A 380 GLY LYS VAL ARG TYR THR GLU TYR GLU LYS GLY PHE MET SEQRES 28 A 380 GLU LYS HIS GLY TRP ASP PRO HIS GLY SER TRP ILE PRO SEQRES 29 A 380 THR TYR GLU ASN GLN GLU ALA ILE GLU TRP LEU PHE GLU SEQRES 30 A 380 GLN SER ARG SEQRES 1 B 380 GLN GLU ASP VAL THR VAL LYS SER VAL THR LEU ILE THR SEQRES 2 B 380 LYS VAL PHE PRO GLU GLY GLU LYS VAL CYS ALA VAL VAL SEQRES 3 B 380 ILE GLU TYR PRO VAL GLU ILE ASP GLY GLN LYS LEU SER SEQRES 4 B 380 PRO ASP GLN PHE SER VAL LYS VAL LYS THR GLY ASP THR SEQRES 5 B 380 TYR SER SER ARG THR ILE THR LYS VAL TYR ALA ASN ASN SEQRES 6 B 380 SER GLY GLY LEU SER PHE SER ILE PHE ASN ASN ARG GLY SEQRES 7 B 380 LYS TYR VAL VAL LEU GLU LEU SER THR GLU ASP LEU HIS SEQRES 8 B 380 SER ASN THR ILE VAL PHE GLY PRO ASN PHE LEU ASN THR SEQRES 9 B 380 ARG MET LYS LEU ASP TYR ILE VAL SER GLN LEU VAL PRO SEQRES 10 B 380 ILE PHE ASP VAL ASP GLY ASN GLU VAL GLU PRO PHE THR SEQRES 11 B 380 SER LYS GLN THR ASP GLU LYS HIS LEU ILE ILE ASP ASP SEQRES 12 B 380 PHE LEU ALA PHE THR PHE LYS ASP PRO GLU THR GLY VAL SEQRES 13 B 380 GLU ILE PRO TYR ARG LEU PHE VAL PRO LYS ASP VAL ASN SEQRES 14 B 380 PRO ASP ARG LYS TYR PRO LEU VAL VAL PHE LEU HIS GLY SEQRES 15 B 380 ALA GLY GLU ARG GLY THR ASP ASN TYR LEU GLN VAL ALA SEQRES 16 B 380 GLY ASN ARG GLY ALA VAL VAL TRP ALA GLN PRO ARG TYR SEQRES 17 B 380 GLN VAL VAL HIS PRO CYS PHE VAL LEU ALA PRO GLN CYS SEQRES 18 B 380 PRO PRO ASN SER SER TRP SER THR LEU PHE THR ASP ARG SEQRES 19 B 380 GLU ASN PRO PHE ASN PRO GLU LYS PRO LEU LEU ALA VAL SEQRES 20 B 380 ILE LYS ILE ILE ARG LYS LEU LEU ASP GLU TYR ASN ILE SEQRES 21 B 380 ASP GLU ASN ARG ILE TYR ILE THR GLY LEU SER MET GLY SEQRES 22 B 380 GLY TYR GLY THR TRP THR ALA ILE MET GLU PHE PRO GLU SEQRES 23 B 380 LEU PHE ALA ALA ALA ILE PRO ILE CYS GLY GLY GLY ASP SEQRES 24 B 380 VAL SER LYS VAL GLU ARG ILE LYS ASP ILE PRO ILE TRP SEQRES 25 B 380 VAL PHE HIS ALA GLU ASP ASP PRO VAL VAL PRO VAL GLU SEQRES 26 B 380 ASN SER ARG VAL LEU VAL LYS LYS LEU ALA GLU ILE GLY SEQRES 27 B 380 GLY LYS VAL ARG TYR THR GLU TYR GLU LYS GLY PHE MET SEQRES 28 B 380 GLU LYS HIS GLY TRP ASP PRO HIS GLY SER TRP ILE PRO SEQRES 29 B 380 THR TYR GLU ASN GLN GLU ALA ILE GLU TRP LEU PHE GLU SEQRES 30 B 380 GLN SER ARG HET SO4 A 400 5 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 502 5 HET SO4 B 500 5 HET SO4 B 501 5 HET SO4 B 503 5 HET SO4 B 504 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 10(O4 S 2-) FORMUL 13 HOH *156(H2 O) HELIX 1 1 GLN A 51 LEU A 53 5 3 HELIX 2 2 SER A 54 ASP A 56 5 3 HELIX 3 3 ASP A 104 ASN A 108 5 5 HELIX 4 4 ILE A 155 ASP A 157 5 3 HELIX 5 5 GLY A 197 ARG A 201 5 5 HELIX 6 6 TYR A 206 GLY A 211 1 6 HELIX 7 7 VAL A 216 ALA A 219 5 4 HELIX 8 8 GLN A 220 VAL A 225 1 6 HELIX 9 9 GLU A 256 TYR A 273 1 18 HELIX 10 10 SER A 286 PHE A 299 1 14 HELIX 11 11 ASP A 314 LYS A 322 5 9 HELIX 12 12 VAL A 339 ILE A 352 1 14 HELIX 13 13 GLY A 364 HIS A 369 1 6 HELIX 14 14 SER A 376 GLU A 382 1 7 HELIX 15 15 ASN A 383 GLU A 392 1 10 HELIX 16 16 ASP B 49 LEU B 53 5 5 HELIX 17 17 SER B 54 ASP B 56 5 3 HELIX 18 18 ASP B 104 ASN B 108 5 5 HELIX 19 19 TYR B 206 GLY B 211 1 6 HELIX 20 20 VAL B 216 ALA B 219 5 4 HELIX 21 21 GLN B 220 VAL B 225 1 6 HELIX 22 22 GLU B 256 TYR B 273 1 18 HELIX 23 23 SER B 286 PHE B 299 1 14 HELIX 24 24 ASP B 314 LYS B 322 5 9 HELIX 25 25 VAL B 339 ILE B 352 1 14 HELIX 26 26 GLY B 364 HIS B 369 1 6 HELIX 27 27 SER B 376 GLU B 382 1 7 HELIX 28 28 ASN B 383 GLU B 392 1 10 SHEET 1 A 5 ILE A 73 ASN A 79 0 SHEET 2 A 5 ARG A 92 LEU A 100 -1 O VAL A 97 N TYR A 77 SHEET 3 A 5 GLY A 34 ASP A 49 -1 N ILE A 42 O VAL A 96 SHEET 4 A 5 SER A 23 PHE A 31 -1 N ILE A 27 O ALA A 39 SHEET 5 A 5 ASP A 150 LEU A 154 1 O ASP A 150 N LEU A 26 SHEET 1 B 4 TYR A 68 ARG A 71 0 SHEET 2 B 4 PHE A 58 LYS A 63 -1 N VAL A 60 O ARG A 71 SHEET 3 B 4 TYR A 125 GLN A 129 -1 O SER A 128 N SER A 59 SHEET 4 B 4 PHE A 144 LYS A 147 -1 O SER A 146 N VAL A 127 SHEET 1 C 6 PHE A 159 LYS A 165 0 SHEET 2 C 6 GLU A 172 PHE A 178 -1 O TYR A 175 N PHE A 162 SHEET 3 C 6 PHE A 230 PRO A 234 -1 O ALA A 233 N ARG A 176 SHEET 4 C 6 TYR A 189 LEU A 195 1 N VAL A 192 O PHE A 230 SHEET 5 C 6 ILE A 275 LEU A 285 1 O TYR A 281 N LEU A 191 SHEET 6 C 6 ALA A 305 ILE A 309 1 O ILE A 309 N GLY A 284 SHEET 1 D 2 ILE A 326 ALA A 331 0 SHEET 2 D 2 VAL A 356 TYR A 361 1 O ARG A 357 N ILE A 326 SHEET 1 E 5 ILE B 73 ASN B 79 0 SHEET 2 E 5 TYR B 95 LEU B 100 -1 O VAL B 97 N TYR B 77 SHEET 3 E 5 GLY B 34 GLU B 43 -1 N VAL B 40 O LEU B 98 SHEET 4 E 5 SER B 23 PHE B 31 -1 N PHE B 31 O GLY B 34 SHEET 5 E 5 ASP B 150 HIS B 153 1 O ASP B 150 N LEU B 26 SHEET 1 F 4 THR B 67 ARG B 71 0 SHEET 2 F 4 PHE B 58 THR B 64 -1 N THR B 64 O THR B 67 SHEET 3 F 4 TYR B 125 GLN B 129 -1 O ILE B 126 N LYS B 61 SHEET 4 F 4 PHE B 144 LYS B 147 -1 O SER B 146 N VAL B 127 SHEET 1 G 2 ILE B 110 VAL B 111 0 SHEET 2 G 2 THR B 119 ARG B 120 -1 O THR B 119 N VAL B 111 SHEET 1 H 2 ILE B 133 PHE B 134 0 SHEET 2 H 2 GLU B 140 VAL B 141 -1 O VAL B 141 N ILE B 133 SHEET 1 I 6 LEU B 160 LYS B 165 0 SHEET 2 I 6 GLU B 172 PHE B 178 -1 O ILE B 173 N PHE B 164 SHEET 3 I 6 PHE B 230 PRO B 234 -1 O ALA B 233 N ARG B 176 SHEET 4 I 6 TYR B 189 LEU B 195 1 N VAL B 192 O PHE B 230 SHEET 5 I 6 ILE B 275 LEU B 285 1 O TYR B 281 N LEU B 191 SHEET 6 I 6 ALA B 305 ILE B 309 1 O ILE B 309 N GLY B 284 SHEET 1 J 2 ILE B 326 ALA B 331 0 SHEET 2 J 2 VAL B 356 TYR B 361 1 O ARG B 357 N ILE B 326 CISPEP 1 THR A 64 GLY A 65 0 3.01 CISPEP 2 PRO A 114 ASN A 115 0 -22.00 CISPEP 3 GLY A 138 ASN A 139 0 -22.59 CISPEP 4 ARG B 92 GLY B 93 0 -7.68 CISPEP 5 PRO B 167 GLU B 168 0 14.03 CISPEP 6 THR B 169 GLY B 170 0 5.83 SITE 1 AC1 7 PHE A 116 GLY A 197 ALA A 198 GLY A 199 SITE 2 AC1 7 SER A 286 MET A 287 HIS A 374 SITE 1 AC2 5 LYS A 29 ARG A 222 GLU A 332 GLU A 362 SITE 2 AC2 5 LYS A 363 SITE 1 AC3 4 LYS A 61 SER A 69 SER A 70 ASP B 56 SITE 1 AC4 5 LYS A 152 LEU A 154 ILE A 155 ASP A 157 SITE 2 AC4 5 ASP A 158 SITE 1 AC5 4 HIS A 153 ASP A 157 ARG A 176 TYR A 206 SITE 1 AC6 7 PHE B 116 GLY B 197 ALA B 198 GLY B 199 SITE 2 AC6 7 SER B 286 MET B 287 HIS B 374 SITE 1 AC7 5 LYS B 29 ARG B 222 GLU B 332 GLU B 362 SITE 2 AC7 5 LYS B 363 SITE 1 AC8 3 ASP A 56 SER B 69 SER B 70 SITE 1 AC9 5 LYS B 152 LEU B 154 ILE B 155 ASP B 157 SITE 2 AC9 5 ASP B 158 SITE 1 BC1 4 HIS B 153 ILE B 156 ASP B 157 ARG B 176 CRYST1 130.157 130.157 306.184 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007683 0.004436 0.000000 0.00000 SCALE2 0.000000 0.008872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003266 0.00000