HEADER TRANSCRIPTION 04-JUL-08 3DOM TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN TFB5 AND THE C-TERMINAL TITLE 2 DOMAIN OF TFB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: TFIIH SUBUNIT TFB2, RNA POLYMERASE II TRANSCRIPTION FACTOR B COMPND 6 P52 SUBUNIT, RNA POLYMERASE II TRANSCRIPTION FACTOR B 52 KDA SUBUNIT, COMPND 7 GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT TFB2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 5; COMPND 11 CHAIN: B, D; COMPND 12 SYNONYM: TFIIH SUBUNIT TFB5, GENERAL TRANSCRIPTION AND DNA REPAIR COMPND 13 FACTOR IIH SUBUNIT TFB5; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TFB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSKB2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: TFB5; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PSKB2 KEYWDS PROTEIN-PROTEIN COMPLEX, HETERODIMER, BETA-ALPHA-BETA SPLIT, BETA- KEYWDS 2 STRAND ADDITION, DNA DAMAGE, DNA EXCISION, DNA REPAIR, NUCLEUS, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR D.E.KAINOV,J.CAVARELLI,J.M.EGLY,A.POTERSZMAN REVDAT 5 21-FEB-24 3DOM 1 SEQADV REVDAT 4 25-OCT-17 3DOM 1 REMARK REVDAT 3 13-JUL-11 3DOM 1 VERSN REVDAT 2 10-FEB-09 3DOM 1 VERSN JRNL REVDAT 1 19-AUG-08 3DOM 0 JRNL AUTH D.E.KAINOV,M.VITORINO,J.CAVARELLI,A.POTERSZMAN,J.M.EGLY JRNL TITL STRUCTURAL BASIS FOR GROUP A TRICHOTHIODYSTROPHY JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 980 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 19172752 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.VITORINO,F.COIN,O.ZLOBINSKAYA,R.A.ATKINSON,D.MORAS, REMARK 1 AUTH 2 J.M.EGLY,A.POTESRZMAN,B.KIEFFER REMARK 1 TITL SOLUTION STRUCTURE AND SELF-ASSOCIATION PROPERTIES OF THE P8 REMARK 1 TITL 2 TFIIH SUBUNIT RESPONSIBLE FOR TRICHOTHIODYSTROPHY REMARK 1 REF J.MOL.BIOL. V. 368 473 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 13816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.423 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2260 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3043 ; 1.826 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 8.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;41.764 ;25.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;20.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.332 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1638 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 0.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2200 ; 1.352 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 900 ; 2.277 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 843 ; 3.769 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0676 19.9149 0.3614 REMARK 3 T TENSOR REMARK 3 T11: -0.2271 T22: -0.2344 REMARK 3 T33: -0.1906 T12: 0.0133 REMARK 3 T13: -0.0302 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 5.3975 L22: 4.2431 REMARK 3 L33: 3.8740 L12: 3.0109 REMARK 3 L13: -2.6063 L23: -2.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: 0.1956 S13: -0.1882 REMARK 3 S21: -0.1016 S22: 0.0476 S23: 0.0411 REMARK 3 S31: 0.1648 S32: -0.2221 S33: -0.1154 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3247 6.7148 5.9384 REMARK 3 T TENSOR REMARK 3 T11: -0.0536 T22: -0.0761 REMARK 3 T33: 0.0049 T12: -0.0049 REMARK 3 T13: -0.0435 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 4.1417 L22: 5.4794 REMARK 3 L33: 10.3254 L12: 1.4825 REMARK 3 L13: -3.7158 L23: -1.0736 REMARK 3 S TENSOR REMARK 3 S11: -0.2539 S12: 0.1313 S13: -0.8816 REMARK 3 S21: -0.0436 S22: 0.0977 S23: 0.1119 REMARK 3 S31: 1.1349 S32: -0.2885 S33: 0.1562 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 432 C 507 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9467 -19.7323 -3.8279 REMARK 3 T TENSOR REMARK 3 T11: -0.1600 T22: -0.2260 REMARK 3 T33: -0.1255 T12: -0.0025 REMARK 3 T13: 0.0198 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 3.1202 L22: 2.7787 REMARK 3 L33: 4.5549 L12: -2.1846 REMARK 3 L13: 2.4051 L23: -2.7108 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.2151 S13: 0.1147 REMARK 3 S21: -0.1499 S22: 0.0336 S23: -0.0455 REMARK 3 S31: 0.0198 S32: -0.3619 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 66 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3543 -7.4125 -12.0027 REMARK 3 T TENSOR REMARK 3 T11: 0.0214 T22: 0.0126 REMARK 3 T33: 0.0824 T12: -0.0129 REMARK 3 T13: -0.0443 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.5347 L22: 3.8970 REMARK 3 L33: 10.8824 L12: -2.3587 REMARK 3 L13: 4.5263 L23: -3.8798 REMARK 3 S TENSOR REMARK 3 S11: -0.3408 S12: 0.3372 S13: 0.6319 REMARK 3 S21: -0.1550 S22: -0.2140 S23: -0.0661 REMARK 3 S31: -0.9998 S32: 0.1021 S33: 0.5548 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.13100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 MME, NACL, HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.79150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.17250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.79650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.17250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.79150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.79650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 406 REMARK 465 PRO A 407 REMARK 465 HIS A 408 REMARK 465 MET A 409 REMARK 465 ALA A 410 REMARK 465 SER A 411 REMARK 465 ALA A 412 REMARK 465 GLU A 413 REMARK 465 GLU A 414 REMARK 465 LYS A 415 REMARK 465 LEU A 416 REMARK 465 GLU A 417 REMARK 465 LYS A 418 REMARK 465 LYS A 419 REMARK 465 LEU A 420 REMARK 465 GLU A 421 REMARK 465 LEU A 422 REMARK 465 ASP A 423 REMARK 465 PRO A 424 REMARK 465 ASN A 425 REMARK 465 CYS A 426 REMARK 465 LYS A 427 REMARK 465 GLU A 428 REMARK 465 PRO A 429 REMARK 465 LEU A 430 REMARK 465 GLN A 431 REMARK 465 VAL A 432 REMARK 465 LEU A 433 REMARK 465 PRO A 434 REMARK 465 PRO A 435 REMARK 465 THR A 436 REMARK 465 LYS A 510 REMARK 465 LYS A 511 REMARK 465 LYS A 512 REMARK 465 GLN A 513 REMARK 465 LYS B 60 REMARK 465 ASN B 61 REMARK 465 ILE B 62 REMARK 465 TYR B 63 REMARK 465 ASN B 64 REMARK 465 PRO B 65 REMARK 465 MET B 66 REMARK 465 ASP B 67 REMARK 465 GLU B 68 REMARK 465 GLU B 69 REMARK 465 GLU B 70 REMARK 465 ASN B 71 REMARK 465 GLN B 72 REMARK 465 GLY C 406 REMARK 465 PRO C 407 REMARK 465 HIS C 408 REMARK 465 MET C 409 REMARK 465 ALA C 410 REMARK 465 SER C 411 REMARK 465 ALA C 412 REMARK 465 GLU C 413 REMARK 465 GLU C 414 REMARK 465 LYS C 415 REMARK 465 LEU C 416 REMARK 465 GLU C 417 REMARK 465 LYS C 418 REMARK 465 LYS C 419 REMARK 465 LEU C 420 REMARK 465 GLU C 421 REMARK 465 LEU C 422 REMARK 465 ASP C 423 REMARK 465 PRO C 424 REMARK 465 ASN C 425 REMARK 465 CYS C 426 REMARK 465 LYS C 427 REMARK 465 GLU C 428 REMARK 465 PRO C 429 REMARK 465 LEU C 430 REMARK 465 LYS C 508 REMARK 465 LEU C 509 REMARK 465 LYS C 510 REMARK 465 LYS C 511 REMARK 465 LYS C 512 REMARK 465 GLN C 513 REMARK 465 ASP D 67 REMARK 465 GLU D 68 REMARK 465 GLU D 69 REMARK 465 GLU D 70 REMARK 465 ASN D 71 REMARK 465 GLN D 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 485 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 PRO C 435 N - CA - C ANGL. DEV. = -21.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 438 55.87 -107.52 REMARK 500 SER B 28 -27.04 83.24 REMARK 500 GLU B 33 140.56 -173.39 REMARK 500 ARG D 3 115.06 -178.09 REMARK 500 ILE D 30 -60.44 -103.61 REMARK 500 GLU D 33 143.18 -171.16 REMARK 500 LEU D 35 -63.84 -92.53 REMARK 500 THR D 38 -1.69 -141.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO C 434 PRO C 435 -96.03 REMARK 500 GLU C 463 THR C 464 -146.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DGP RELATED DB: PDB REMARK 900 RELATED ID: 1YDL RELATED DB: PDB REMARK 900 RELATED ID: 2JNJ RELATED DB: PDB DBREF 3DOM A 412 513 UNP Q02939 TFB2_YEAST 412 513 DBREF 3DOM B 2 72 UNP Q3E7C1 TFB5_YEAST 2 72 DBREF 3DOM C 412 513 UNP Q02939 TFB2_YEAST 412 513 DBREF 3DOM D 2 72 UNP Q3E7C1 TFB5_YEAST 2 72 SEQADV 3DOM GLY A 406 UNP Q02939 EXPRESSION TAG SEQADV 3DOM PRO A 407 UNP Q02939 EXPRESSION TAG SEQADV 3DOM HIS A 408 UNP Q02939 EXPRESSION TAG SEQADV 3DOM MET A 409 UNP Q02939 EXPRESSION TAG SEQADV 3DOM ALA A 410 UNP Q02939 EXPRESSION TAG SEQADV 3DOM SER A 411 UNP Q02939 EXPRESSION TAG SEQADV 3DOM GLY C 406 UNP Q02939 EXPRESSION TAG SEQADV 3DOM PRO C 407 UNP Q02939 EXPRESSION TAG SEQADV 3DOM HIS C 408 UNP Q02939 EXPRESSION TAG SEQADV 3DOM MET C 409 UNP Q02939 EXPRESSION TAG SEQADV 3DOM ALA C 410 UNP Q02939 EXPRESSION TAG SEQADV 3DOM SER C 411 UNP Q02939 EXPRESSION TAG SEQRES 1 A 108 GLY PRO HIS MET ALA SER ALA GLU GLU LYS LEU GLU LYS SEQRES 2 A 108 LYS LEU GLU LEU ASP PRO ASN CYS LYS GLU PRO LEU GLN SEQRES 3 A 108 VAL LEU PRO PRO THR VAL VAL ASP GLN ILE ARG LEU TRP SEQRES 4 A 108 GLN LEU GLU LEU ASP ARG VAL ILE THR TYR GLU GLY SER SEQRES 5 A 108 LEU TYR SER ASP PHE GLU THR SER GLN GLU TYR ASN LEU SEQRES 6 A 108 LEU SER LYS TYR ALA GLN ASP ILE GLY VAL LEU LEU TRP SEQRES 7 A 108 LYS ASP ASP LYS LYS LYS LYS PHE PHE ILE SER LYS GLU SEQRES 8 A 108 GLY ASN SER GLN VAL LEU ASP PHE ALA LYS ARG LYS LEU SEQRES 9 A 108 LYS LYS LYS GLN SEQRES 1 B 71 ALA ARG ALA ARG LYS GLY ALA LEU VAL GLN CYS ASP PRO SEQRES 2 B 71 SER ILE LYS ALA LEU ILE LEU GLN ILE ASP ALA LYS MET SEQRES 3 B 71 SER ASP ILE VAL LEU GLU GLU LEU ASP ASP THR HIS LEU SEQRES 4 B 71 LEU VAL ASN PRO SER LYS VAL GLU PHE VAL LYS HIS GLU SEQRES 5 B 71 LEU ASN ARG LEU LEU SER LYS ASN ILE TYR ASN PRO MET SEQRES 6 B 71 ASP GLU GLU GLU ASN GLN SEQRES 1 C 108 GLY PRO HIS MET ALA SER ALA GLU GLU LYS LEU GLU LYS SEQRES 2 C 108 LYS LEU GLU LEU ASP PRO ASN CYS LYS GLU PRO LEU GLN SEQRES 3 C 108 VAL LEU PRO PRO THR VAL VAL ASP GLN ILE ARG LEU TRP SEQRES 4 C 108 GLN LEU GLU LEU ASP ARG VAL ILE THR TYR GLU GLY SER SEQRES 5 C 108 LEU TYR SER ASP PHE GLU THR SER GLN GLU TYR ASN LEU SEQRES 6 C 108 LEU SER LYS TYR ALA GLN ASP ILE GLY VAL LEU LEU TRP SEQRES 7 C 108 LYS ASP ASP LYS LYS LYS LYS PHE PHE ILE SER LYS GLU SEQRES 8 C 108 GLY ASN SER GLN VAL LEU ASP PHE ALA LYS ARG LYS LEU SEQRES 9 C 108 LYS LYS LYS GLN SEQRES 1 D 71 ALA ARG ALA ARG LYS GLY ALA LEU VAL GLN CYS ASP PRO SEQRES 2 D 71 SER ILE LYS ALA LEU ILE LEU GLN ILE ASP ALA LYS MET SEQRES 3 D 71 SER ASP ILE VAL LEU GLU GLU LEU ASP ASP THR HIS LEU SEQRES 4 D 71 LEU VAL ASN PRO SER LYS VAL GLU PHE VAL LYS HIS GLU SEQRES 5 D 71 LEU ASN ARG LEU LEU SER LYS ASN ILE TYR ASN PRO MET SEQRES 6 D 71 ASP GLU GLU GLU ASN GLN FORMUL 5 HOH *97(H2 O) HELIX 1 1 ASP A 439 ASP A 449 1 11 HELIX 2 2 THR A 464 GLY A 479 1 16 HELIX 3 3 ASP A 486 LYS A 489 5 4 HELIX 4 4 GLY A 497 LEU A 509 1 13 HELIX 5 5 ASP B 13 SER B 28 1 16 HELIX 6 6 LYS B 46 LEU B 58 1 13 HELIX 7 7 PRO C 434 ASP C 449 1 16 HELIX 8 8 THR C 464 ILE C 478 1 15 HELIX 9 9 GLY C 497 ARG C 507 1 11 HELIX 10 10 ASP D 13 ALA D 25 1 13 HELIX 11 11 LYS D 46 ASN D 61 1 16 SHEET 1 A 6 LEU A 481 ASP A 485 0 SHEET 2 A 6 LYS A 490 SER A 494 -1 O PHE A 492 N LEU A 482 SHEET 3 A 6 ILE A 452 SER A 460 -1 N TYR A 459 O PHE A 491 SHEET 4 A 6 ARG B 3 GLN B 11 -1 O GLN B 11 N ILE A 452 SHEET 5 A 6 HIS B 39 VAL B 42 -1 O LEU B 40 N VAL B 10 SHEET 6 A 6 VAL B 31 ASP B 36 -1 N GLU B 33 O LEU B 41 SHEET 1 B 6 LEU C 481 ASP C 485 0 SHEET 2 B 6 LYS C 490 SER C 494 -1 O PHE C 492 N LEU C 482 SHEET 3 B 6 ILE C 452 TYR C 459 -1 N TYR C 459 O PHE C 491 SHEET 4 B 6 ALA D 4 GLN D 11 -1 O ARG D 5 N LEU C 458 SHEET 5 B 6 HIS D 39 VAL D 42 -1 O LEU D 40 N VAL D 10 SHEET 6 B 6 VAL D 31 ASP D 36 -1 N GLU D 33 O LEU D 41 CRYST1 37.583 103.593 114.345 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026608 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008745 0.00000