HEADER METAL TRANSPORT 07-JUL-08 3DP8 TITLE STRUCTURAL CHARACTERIZATION OF A PUTATIVE ENDOGENOUS METAL CHELATOR IN TITLE 2 THE PERIPLASMIC NICKEL TRANSPORTER NIKA (NICKEL BUTANE-1,2,4- TITLE 3 TRICARBOXYLATE FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICKEL-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NIKA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: NIKA, B3476, JW3441; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS NICKEL, NICKELLOPHORE, BUTANE-1, 2, 4-TRICARBOXYLATE, TRANSPORT, KEYWDS 2 METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.V.CHERRIER,C.CAVAZZA,C.BOCHOT,D.LEMAIRE,J.C.FONTECILLA-CAMPS REVDAT 5 01-NOV-23 3DP8 1 REMARK LINK REVDAT 4 13-JUL-11 3DP8 1 VERSN REVDAT 3 24-FEB-09 3DP8 1 VERSN REVDAT 2 30-SEP-08 3DP8 1 JRNL REVDAT 1 16-SEP-08 3DP8 0 JRNL AUTH M.V.CHERRIER,C.CAVAZZA,C.BOCHOT,D.LEMAIRE, JRNL AUTH 2 J.C.FONTECILLA-CAMPS JRNL TITL STRUCTURAL CHARACTERIZATION OF A PUTATIVE ENDOGENOUS METAL JRNL TITL 2 CHELATOR IN THE PERIPLASMIC NICKEL TRANSPORTER NIKA JRNL REF BIOCHEMISTRY V. 47 9937 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18759453 JRNL DOI 10.1021/BI801051Y REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 64541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1707 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.466 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.300 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.210 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12540 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 17112 ; 1.963 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1571 ; 7.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 596 ;40.225 ;24.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2089 ;20.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 66 ;22.800 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1865 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9729 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 5984 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 8292 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 558 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.294 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7886 ; 0.955 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 12415 ; 1.644 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5370 ; 2.408 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4655 ; 3.714 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32600 REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 100MM SODIUM REMARK 280 ACETATE, PH4.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.96000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.98000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.96000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 VAL A 500 REMARK 465 LYS A 501 REMARK 465 PRO A 502 REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 SER B 308 REMARK 465 LYS B 501 REMARK 465 PRO B 502 REMARK 465 ALA C 1 REMARK 465 ALA C 2 REMARK 465 PRO C 3 REMARK 465 VAL C 500 REMARK 465 LYS C 501 REMARK 465 PRO C 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 382 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 386 CB CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 309 CA CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 95 O ILE B 107 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 309 N GLN B 309 CA -0.361 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 3 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 PHE A 73 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 ARG A 231 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 452 CG - CD - NE ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 452 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 4 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 LEU B 224 CA - CB - CG ANGL. DEV. = 20.8 DEGREES REMARK 500 GLN B 309 N - CA - CB ANGL. DEV. = -38.0 DEGREES REMARK 500 GLN B 309 N - CA - C ANGL. DEV. = 33.5 DEGREES REMARK 500 LEU C 303 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO C 499 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 22 -128.74 -114.36 REMARK 500 TRP A 49 -110.21 -127.43 REMARK 500 SER A 74 -72.13 91.13 REMARK 500 ALA A 81 -33.68 -37.70 REMARK 500 LEU A 113 -93.80 -73.36 REMARK 500 PRO A 128 22.12 -77.36 REMARK 500 ARG A 137 136.77 -174.97 REMARK 500 PHE A 139 54.42 -98.63 REMARK 500 SER A 145 -3.83 -53.91 REMARK 500 ASN A 149 -122.45 66.62 REMARK 500 LYS A 157 -72.29 -90.44 REMARK 500 PRO A 159 64.15 -65.14 REMARK 500 GLN A 174 -44.69 -131.72 REMARK 500 ASN A 183 49.33 -103.53 REMARK 500 ASN A 281 -83.55 -81.93 REMARK 500 TYR A 300 -2.65 68.23 REMARK 500 ASP A 311 78.36 -152.46 REMARK 500 ALA A 328 122.98 -36.51 REMARK 500 PHE A 346 148.64 -179.58 REMARK 500 ILE A 347 99.63 -53.52 REMARK 500 ARG A 389 68.62 -110.25 REMARK 500 HIS A 416 -145.41 -149.94 REMARK 500 ASP B 4 -24.72 83.94 REMARK 500 TYR B 22 -147.09 -106.82 REMARK 500 ASP B 43 6.90 -66.34 REMARK 500 TRP B 49 -104.71 -142.62 REMARK 500 SER B 114 -140.05 -115.24 REMARK 500 PRO B 128 3.18 -67.70 REMARK 500 PHE B 139 48.76 -85.75 REMARK 500 LYS B 157 -92.78 -92.18 REMARK 500 PRO B 159 67.68 -62.95 REMARK 500 ASN B 173 9.68 53.69 REMARK 500 GLN B 174 -57.23 -125.08 REMARK 500 LEU B 216 123.46 -173.94 REMARK 500 ALA B 282 -28.64 -153.56 REMARK 500 TYR B 284 -2.44 74.62 REMARK 500 THR B 286 -83.96 83.57 REMARK 500 ASP B 311 86.44 -159.65 REMARK 500 ALA B 322 14.18 -68.67 REMARK 500 ALA B 328 114.57 -39.63 REMARK 500 LEU B 340 90.23 -62.05 REMARK 500 SER B 415 -90.30 -146.37 REMARK 500 HIS B 416 -152.86 -101.41 REMARK 500 LEU C 17 30.67 89.16 REMARK 500 TYR C 22 -133.93 -112.61 REMARK 500 TRP C 49 -116.90 -134.44 REMARK 500 SER C 57 -158.68 -75.36 REMARK 500 ASP C 59 -48.83 179.21 REMARK 500 LEU C 67 -173.66 -44.40 REMARK 500 ARG C 68 -167.42 74.66 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 73 SER A 74 45.06 REMARK 500 LEU A 172 ASN A 173 -36.71 REMARK 500 SER A 415 HIS A 416 104.30 REMARK 500 PRO B 3 ASP B 4 -47.51 REMARK 500 ASP B 215 LEU B 216 -149.90 REMARK 500 GLU C 58 ASP C 59 -31.36 REMARK 500 ASP C 59 GLY C 60 -39.13 REMARK 500 LEU C 67 ARG C 68 53.26 REMARK 500 ARG C 68 ASP C 69 40.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 309 13.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 503 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 416 NE2 REMARK 620 2 HCT B 511 O6 174.6 REMARK 620 3 HCT B 511 O3 100.0 84.5 REMARK 620 4 HCT B 511 O1 88.5 87.4 167.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 503 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 416 NE2 REMARK 620 2 HCT C 509 O6 170.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCT B 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCT A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCT C 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 515 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZLQ RELATED DB: PDB REMARK 900 NIKA - FEEDTA REMARK 900 RELATED ID: 1UIU RELATED DB: PDB REMARK 900 NIKA - NICKEL UNLIGANDED FORM REMARK 900 RELATED ID: 1UIV RELATED DB: PDB REMARK 900 NIKA - NICKEL LIGANDED FORM REMARK 900 RELATED ID: 2NOO RELATED DB: PDB REMARK 900 NIKA MUTANT DBREF 3DP8 A 1 502 UNP P33590 NIKA_ECOLI 23 524 DBREF 3DP8 B 1 502 UNP P33590 NIKA_ECOLI 23 524 DBREF 3DP8 C 1 502 UNP P33590 NIKA_ECOLI 23 524 SEQRES 1 A 502 ALA ALA PRO ASP GLU ILE THR THR ALA TRP PRO VAL ASN SEQRES 2 A 502 VAL GLY PRO LEU ASN PRO HIS LEU TYR THR PRO ASN GLN SEQRES 3 A 502 MET PHE ALA GLN SER MET VAL TYR GLU PRO LEU VAL LYS SEQRES 4 A 502 TYR GLN ALA ASP GLY SER VAL ILE PRO TRP LEU ALA LYS SEQRES 5 A 502 SER TRP THR HIS SER GLU ASP GLY LYS THR TRP THR PHE SEQRES 6 A 502 THR LEU ARG ASP ASP VAL LYS PHE SER ASN GLY GLU PRO SEQRES 7 A 502 PHE ASP ALA GLU ALA ALA ALA GLU ASN PHE ARG ALA VAL SEQRES 8 A 502 LEU ASP ASN ARG GLN ARG HIS ALA TRP LEU GLU LEU ALA SEQRES 9 A 502 ASN GLN ILE VAL ASP VAL LYS ALA LEU SER LYS THR GLU SEQRES 10 A 502 LEU GLN ILE THR LEU LYS SER ALA TYR TYR PRO PHE LEU SEQRES 11 A 502 GLN GLU LEU ALA LEU PRO ARG PRO PHE ARG PHE ILE ALA SEQRES 12 A 502 PRO SER GLN PHE LYS ASN HIS GLU THR MET ASN GLY ILE SEQRES 13 A 502 LYS ALA PRO ILE GLY THR GLY PRO TRP ILE LEU GLN GLU SEQRES 14 A 502 SER LYS LEU ASN GLN TYR ASP VAL PHE VAL ARG ASN GLU SEQRES 15 A 502 ASN TYR TRP GLY GLU LYS PRO ALA ILE LYS LYS ILE THR SEQRES 16 A 502 PHE ASN VAL ILE PRO ASP PRO THR THR ARG ALA VAL ALA SEQRES 17 A 502 PHE GLU THR GLY ASP ILE ASP LEU LEU TYR GLY ASN GLU SEQRES 18 A 502 GLY LEU LEU PRO LEU ASP THR PHE ALA ARG PHE SER GLN SEQRES 19 A 502 ASN PRO ALA TYR HIS THR GLN LEU SER GLN PRO ILE GLU SEQRES 20 A 502 THR VAL MET LEU ALA LEU ASN THR ALA LYS ALA PRO THR SEQRES 21 A 502 ASN GLU LEU ALA VAL ARG GLU ALA LEU ASN TYR ALA VAL SEQRES 22 A 502 ASN LYS LYS SER LEU ILE ASP ASN ALA LEU TYR GLY THR SEQRES 23 A 502 GLN GLN VAL ALA ASP THR LEU PHE ALA PRO SER VAL PRO SEQRES 24 A 502 TYR ALA ASN LEU GLY LEU LYS PRO SER GLN TYR ASP PRO SEQRES 25 A 502 GLN LYS ALA LYS ALA LEU LEU GLU LYS ALA GLY TRP THR SEQRES 26 A 502 LEU PRO ALA GLY LYS ASP ILE ARG GLU LYS ASN GLY GLN SEQRES 27 A 502 PRO LEU ARG ILE GLU LEU SER PHE ILE GLY THR ASP ALA SEQRES 28 A 502 LEU SER LYS SER MET ALA GLU ILE ILE GLN ALA ASP MET SEQRES 29 A 502 ARG GLN ILE GLY ALA ASP VAL SER LEU ILE GLY GLU GLU SEQRES 30 A 502 GLU SER SER ILE TYR ALA ARG GLN ARG ASP GLY ARG PHE SEQRES 31 A 502 GLY MET ILE PHE HIS ARG THR TRP GLY ALA PRO TYR ASP SEQRES 32 A 502 PRO HIS ALA PHE LEU SER SER MET ARG VAL PRO SER HIS SEQRES 33 A 502 ALA ASP PHE GLN ALA GLN GLN GLY LEU ALA ASP LYS PRO SEQRES 34 A 502 LEU ILE ASP LYS GLU ILE GLY GLU VAL LEU ALA THR HIS SEQRES 35 A 502 ASP GLU THR GLN ARG GLN ALA LEU TYR ARG ASP ILE LEU SEQRES 36 A 502 THR ARG LEU HIS ASP GLU ALA VAL TYR LEU PRO ILE SER SEQRES 37 A 502 TYR ILE SER MET MET VAL VAL SER LYS PRO GLU LEU GLY SEQRES 38 A 502 ASN ILE PRO TYR ALA PRO ILE ALA THR GLU ILE PRO PHE SEQRES 39 A 502 GLU GLN ILE LYS PRO VAL LYS PRO SEQRES 1 B 502 ALA ALA PRO ASP GLU ILE THR THR ALA TRP PRO VAL ASN SEQRES 2 B 502 VAL GLY PRO LEU ASN PRO HIS LEU TYR THR PRO ASN GLN SEQRES 3 B 502 MET PHE ALA GLN SER MET VAL TYR GLU PRO LEU VAL LYS SEQRES 4 B 502 TYR GLN ALA ASP GLY SER VAL ILE PRO TRP LEU ALA LYS SEQRES 5 B 502 SER TRP THR HIS SER GLU ASP GLY LYS THR TRP THR PHE SEQRES 6 B 502 THR LEU ARG ASP ASP VAL LYS PHE SER ASN GLY GLU PRO SEQRES 7 B 502 PHE ASP ALA GLU ALA ALA ALA GLU ASN PHE ARG ALA VAL SEQRES 8 B 502 LEU ASP ASN ARG GLN ARG HIS ALA TRP LEU GLU LEU ALA SEQRES 9 B 502 ASN GLN ILE VAL ASP VAL LYS ALA LEU SER LYS THR GLU SEQRES 10 B 502 LEU GLN ILE THR LEU LYS SER ALA TYR TYR PRO PHE LEU SEQRES 11 B 502 GLN GLU LEU ALA LEU PRO ARG PRO PHE ARG PHE ILE ALA SEQRES 12 B 502 PRO SER GLN PHE LYS ASN HIS GLU THR MET ASN GLY ILE SEQRES 13 B 502 LYS ALA PRO ILE GLY THR GLY PRO TRP ILE LEU GLN GLU SEQRES 14 B 502 SER LYS LEU ASN GLN TYR ASP VAL PHE VAL ARG ASN GLU SEQRES 15 B 502 ASN TYR TRP GLY GLU LYS PRO ALA ILE LYS LYS ILE THR SEQRES 16 B 502 PHE ASN VAL ILE PRO ASP PRO THR THR ARG ALA VAL ALA SEQRES 17 B 502 PHE GLU THR GLY ASP ILE ASP LEU LEU TYR GLY ASN GLU SEQRES 18 B 502 GLY LEU LEU PRO LEU ASP THR PHE ALA ARG PHE SER GLN SEQRES 19 B 502 ASN PRO ALA TYR HIS THR GLN LEU SER GLN PRO ILE GLU SEQRES 20 B 502 THR VAL MET LEU ALA LEU ASN THR ALA LYS ALA PRO THR SEQRES 21 B 502 ASN GLU LEU ALA VAL ARG GLU ALA LEU ASN TYR ALA VAL SEQRES 22 B 502 ASN LYS LYS SER LEU ILE ASP ASN ALA LEU TYR GLY THR SEQRES 23 B 502 GLN GLN VAL ALA ASP THR LEU PHE ALA PRO SER VAL PRO SEQRES 24 B 502 TYR ALA ASN LEU GLY LEU LYS PRO SER GLN TYR ASP PRO SEQRES 25 B 502 GLN LYS ALA LYS ALA LEU LEU GLU LYS ALA GLY TRP THR SEQRES 26 B 502 LEU PRO ALA GLY LYS ASP ILE ARG GLU LYS ASN GLY GLN SEQRES 27 B 502 PRO LEU ARG ILE GLU LEU SER PHE ILE GLY THR ASP ALA SEQRES 28 B 502 LEU SER LYS SER MET ALA GLU ILE ILE GLN ALA ASP MET SEQRES 29 B 502 ARG GLN ILE GLY ALA ASP VAL SER LEU ILE GLY GLU GLU SEQRES 30 B 502 GLU SER SER ILE TYR ALA ARG GLN ARG ASP GLY ARG PHE SEQRES 31 B 502 GLY MET ILE PHE HIS ARG THR TRP GLY ALA PRO TYR ASP SEQRES 32 B 502 PRO HIS ALA PHE LEU SER SER MET ARG VAL PRO SER HIS SEQRES 33 B 502 ALA ASP PHE GLN ALA GLN GLN GLY LEU ALA ASP LYS PRO SEQRES 34 B 502 LEU ILE ASP LYS GLU ILE GLY GLU VAL LEU ALA THR HIS SEQRES 35 B 502 ASP GLU THR GLN ARG GLN ALA LEU TYR ARG ASP ILE LEU SEQRES 36 B 502 THR ARG LEU HIS ASP GLU ALA VAL TYR LEU PRO ILE SER SEQRES 37 B 502 TYR ILE SER MET MET VAL VAL SER LYS PRO GLU LEU GLY SEQRES 38 B 502 ASN ILE PRO TYR ALA PRO ILE ALA THR GLU ILE PRO PHE SEQRES 39 B 502 GLU GLN ILE LYS PRO VAL LYS PRO SEQRES 1 C 502 ALA ALA PRO ASP GLU ILE THR THR ALA TRP PRO VAL ASN SEQRES 2 C 502 VAL GLY PRO LEU ASN PRO HIS LEU TYR THR PRO ASN GLN SEQRES 3 C 502 MET PHE ALA GLN SER MET VAL TYR GLU PRO LEU VAL LYS SEQRES 4 C 502 TYR GLN ALA ASP GLY SER VAL ILE PRO TRP LEU ALA LYS SEQRES 5 C 502 SER TRP THR HIS SER GLU ASP GLY LYS THR TRP THR PHE SEQRES 6 C 502 THR LEU ARG ASP ASP VAL LYS PHE SER ASN GLY GLU PRO SEQRES 7 C 502 PHE ASP ALA GLU ALA ALA ALA GLU ASN PHE ARG ALA VAL SEQRES 8 C 502 LEU ASP ASN ARG GLN ARG HIS ALA TRP LEU GLU LEU ALA SEQRES 9 C 502 ASN GLN ILE VAL ASP VAL LYS ALA LEU SER LYS THR GLU SEQRES 10 C 502 LEU GLN ILE THR LEU LYS SER ALA TYR TYR PRO PHE LEU SEQRES 11 C 502 GLN GLU LEU ALA LEU PRO ARG PRO PHE ARG PHE ILE ALA SEQRES 12 C 502 PRO SER GLN PHE LYS ASN HIS GLU THR MET ASN GLY ILE SEQRES 13 C 502 LYS ALA PRO ILE GLY THR GLY PRO TRP ILE LEU GLN GLU SEQRES 14 C 502 SER LYS LEU ASN GLN TYR ASP VAL PHE VAL ARG ASN GLU SEQRES 15 C 502 ASN TYR TRP GLY GLU LYS PRO ALA ILE LYS LYS ILE THR SEQRES 16 C 502 PHE ASN VAL ILE PRO ASP PRO THR THR ARG ALA VAL ALA SEQRES 17 C 502 PHE GLU THR GLY ASP ILE ASP LEU LEU TYR GLY ASN GLU SEQRES 18 C 502 GLY LEU LEU PRO LEU ASP THR PHE ALA ARG PHE SER GLN SEQRES 19 C 502 ASN PRO ALA TYR HIS THR GLN LEU SER GLN PRO ILE GLU SEQRES 20 C 502 THR VAL MET LEU ALA LEU ASN THR ALA LYS ALA PRO THR SEQRES 21 C 502 ASN GLU LEU ALA VAL ARG GLU ALA LEU ASN TYR ALA VAL SEQRES 22 C 502 ASN LYS LYS SER LEU ILE ASP ASN ALA LEU TYR GLY THR SEQRES 23 C 502 GLN GLN VAL ALA ASP THR LEU PHE ALA PRO SER VAL PRO SEQRES 24 C 502 TYR ALA ASN LEU GLY LEU LYS PRO SER GLN TYR ASP PRO SEQRES 25 C 502 GLN LYS ALA LYS ALA LEU LEU GLU LYS ALA GLY TRP THR SEQRES 26 C 502 LEU PRO ALA GLY LYS ASP ILE ARG GLU LYS ASN GLY GLN SEQRES 27 C 502 PRO LEU ARG ILE GLU LEU SER PHE ILE GLY THR ASP ALA SEQRES 28 C 502 LEU SER LYS SER MET ALA GLU ILE ILE GLN ALA ASP MET SEQRES 29 C 502 ARG GLN ILE GLY ALA ASP VAL SER LEU ILE GLY GLU GLU SEQRES 30 C 502 GLU SER SER ILE TYR ALA ARG GLN ARG ASP GLY ARG PHE SEQRES 31 C 502 GLY MET ILE PHE HIS ARG THR TRP GLY ALA PRO TYR ASP SEQRES 32 C 502 PRO HIS ALA PHE LEU SER SER MET ARG VAL PRO SER HIS SEQRES 33 C 502 ALA ASP PHE GLN ALA GLN GLN GLY LEU ALA ASP LYS PRO SEQRES 34 C 502 LEU ILE ASP LYS GLU ILE GLY GLU VAL LEU ALA THR HIS SEQRES 35 C 502 ASP GLU THR GLN ARG GLN ALA LEU TYR ARG ASP ILE LEU SEQRES 36 C 502 THR ARG LEU HIS ASP GLU ALA VAL TYR LEU PRO ILE SER SEQRES 37 C 502 TYR ILE SER MET MET VAL VAL SER LYS PRO GLU LEU GLY SEQRES 38 C 502 ASN ILE PRO TYR ALA PRO ILE ALA THR GLU ILE PRO PHE SEQRES 39 C 502 GLU GLN ILE LYS PRO VAL LYS PRO HET NI A 503 1 HET ACT A 504 4 HET ACT A 505 4 HET ACT A 506 4 HET ACT A 507 4 HET SO4 A 508 5 HET CL A 509 1 HET CL A 510 1 HET HCT A 511 13 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET GOL A 515 6 HET NI B 503 1 HET ACT B 504 4 HET ACT B 505 4 HET ACT B 506 4 HET ACT B 507 4 HET CL B 508 1 HET CL B 509 1 HET CL B 510 1 HET HCT B 511 13 HET GOL B 512 6 HET GOL B 513 6 HET GOL B 514 6 HET GOL B 515 6 HET NI C 503 1 HET ACT C 504 4 HET ACT C 505 4 HET ACT C 506 4 HET CL C 507 1 HET CL C 508 1 HET HCT C 509 13 HETNAM NI NICKEL (II) ION HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM HCT (2R)-BUTANE-1,2,4-TRICARBOXYLIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NI 3(NI 2+) FORMUL 5 ACT 11(C2 H3 O2 1-) FORMUL 9 SO4 O4 S 2- FORMUL 10 CL 7(CL 1-) FORMUL 12 HCT 3(C7 H10 O6) FORMUL 13 GOL 8(C3 H8 O3) FORMUL 37 HOH *265(H2 O) HELIX 1 1 GLN A 26 TYR A 34 1 9 HELIX 2 2 ASP A 80 ASP A 93 1 14 HELIX 3 3 ASN A 94 ALA A 99 5 6 HELIX 4 4 LEU A 101 GLN A 106 1 6 HELIX 5 5 PRO A 128 ALA A 134 1 7 HELIX 6 6 ALA A 143 PHE A 147 5 5 HELIX 7 7 ASP A 201 THR A 211 1 11 HELIX 8 8 PRO A 225 GLN A 234 1 10 HELIX 9 9 GLU A 262 VAL A 273 1 12 HELIX 10 10 ASN A 274 LEU A 283 1 10 HELIX 11 11 ASP A 311 ALA A 322 1 12 HELIX 12 12 ASP A 350 GLN A 366 1 17 HELIX 13 13 GLU A 377 GLY A 388 1 12 HELIX 14 14 PRO A 404 MET A 411 1 8 HELIX 15 15 HIS A 416 GLN A 423 1 8 HELIX 16 16 ASP A 427 THR A 441 1 15 HELIX 17 17 ASP A 443 GLU A 461 1 19 HELIX 18 18 PRO A 478 GLY A 481 5 4 HELIX 19 19 PRO A 493 ILE A 497 5 5 HELIX 20 20 GLN B 26 TYR B 34 1 9 HELIX 21 21 ASP B 80 ASP B 93 1 14 HELIX 22 22 ASN B 94 ALA B 99 5 6 HELIX 23 23 LEU B 101 GLN B 106 1 6 HELIX 24 24 PRO B 128 ALA B 134 1 7 HELIX 25 25 ALA B 143 PHE B 147 5 5 HELIX 26 26 ASP B 201 THR B 211 1 11 HELIX 27 27 PRO B 225 GLN B 234 1 10 HELIX 28 28 GLU B 262 VAL B 273 1 12 HELIX 29 29 ASN B 274 ASN B 281 1 8 HELIX 30 30 ASP B 311 ALA B 322 1 12 HELIX 31 31 ASP B 350 GLN B 366 1 17 HELIX 32 32 GLU B 377 GLY B 388 1 12 HELIX 33 33 PRO B 404 SER B 410 1 7 HELIX 34 34 MET B 411 VAL B 413 5 3 HELIX 35 35 ALA B 417 GLN B 422 1 6 HELIX 36 36 ASP B 427 THR B 441 1 15 HELIX 37 37 ASP B 443 GLU B 461 1 19 HELIX 38 38 PRO B 478 GLY B 481 5 4 HELIX 39 39 PRO B 493 ILE B 497 5 5 HELIX 40 40 GLN C 26 TYR C 34 1 9 HELIX 41 41 ASP C 80 ASP C 93 1 14 HELIX 42 42 ASN C 94 ALA C 99 5 6 HELIX 43 43 LEU C 101 GLN C 106 1 6 HELIX 44 44 PRO C 128 ALA C 134 1 7 HELIX 45 45 ALA C 143 PHE C 147 5 5 HELIX 46 46 ASP C 201 THR C 211 1 11 HELIX 47 47 PRO C 225 GLN C 234 1 10 HELIX 48 48 GLU C 262 VAL C 273 1 12 HELIX 49 49 ASN C 274 ASN C 281 1 8 HELIX 50 50 ASP C 311 ALA C 322 1 12 HELIX 51 51 ASP C 350 GLN C 366 1 17 HELIX 52 52 GLU C 377 GLY C 388 1 12 HELIX 53 53 PRO C 404 MET C 411 1 8 HELIX 54 54 ALA C 417 GLN C 422 1 6 HELIX 55 55 ASP C 427 LEU C 439 1 13 HELIX 56 56 ASP C 443 GLU C 461 1 19 HELIX 57 57 PRO C 478 GLY C 481 5 4 HELIX 58 58 PRO C 493 ILE C 497 5 5 SHEET 1 A 4 GLU A 5 TRP A 10 0 SHEET 2 A 4 LYS A 193 VAL A 198 1 O THR A 195 N THR A 8 SHEET 3 A 4 TYR A 175 ARG A 180 -1 N ASP A 176 O PHE A 196 SHEET 4 A 4 TRP A 165 LYS A 171 -1 N GLU A 169 O VAL A 177 SHEET 1 B 2 VAL A 38 TYR A 40 0 SHEET 2 B 2 VAL A 46 PRO A 48 -1 O ILE A 47 N LYS A 39 SHEET 1 C 4 ALA A 51 HIS A 56 0 SHEET 2 C 4 THR A 62 LEU A 67 -1 O THR A 64 N THR A 55 SHEET 3 C 4 GLU A 117 LEU A 122 -1 O ILE A 120 N TRP A 63 SHEET 4 C 4 ILE A 107 ALA A 112 -1 N VAL A 108 O THR A 121 SHEET 1 D 3 LEU A 216 GLY A 219 0 SHEET 2 D 3 TYR A 464 SER A 476 -1 O VAL A 475 N LEU A 217 SHEET 3 D 3 GLN A 288 VAL A 289 -1 N GLN A 288 O TYR A 469 SHEET 1 E 6 LEU A 216 GLY A 219 0 SHEET 2 E 6 TYR A 464 SER A 476 -1 O VAL A 475 N LEU A 217 SHEET 3 E 6 HIS A 239 LEU A 253 -1 N HIS A 239 O SER A 476 SHEET 4 E 6 MET A 392 ARG A 396 -1 O HIS A 395 N MET A 250 SHEET 5 E 6 ARG A 341 ILE A 347 1 N GLU A 343 O MET A 392 SHEET 6 E 6 ASP A 370 GLU A 376 1 O ASP A 370 N ILE A 342 SHEET 1 F 2 GLU A 334 LYS A 335 0 SHEET 2 F 2 GLN A 338 PRO A 339 -1 O GLN A 338 N LYS A 335 SHEET 1 G 4 GLU B 5 TRP B 10 0 SHEET 2 G 4 LYS B 193 VAL B 198 1 O THR B 195 N THR B 8 SHEET 3 G 4 TYR B 175 ARG B 180 -1 N PHE B 178 O ILE B 194 SHEET 4 G 4 TRP B 165 LYS B 171 -1 N LYS B 171 O TYR B 175 SHEET 1 H 2 VAL B 38 TYR B 40 0 SHEET 2 H 2 VAL B 46 PRO B 48 -1 O ILE B 47 N LYS B 39 SHEET 1 I 4 ALA B 51 HIS B 56 0 SHEET 2 I 4 THR B 62 LEU B 67 -1 O THR B 64 N THR B 55 SHEET 3 I 4 GLU B 117 LEU B 122 -1 O ILE B 120 N TRP B 63 SHEET 4 I 4 ILE B 107 ALA B 112 -1 N VAL B 108 O THR B 121 SHEET 1 J 3 LEU B 216 ASN B 220 0 SHEET 2 J 3 MET B 472 SER B 476 -1 O VAL B 475 N LEU B 217 SHEET 3 J 3 HIS B 239 LEU B 242 -1 N HIS B 239 O SER B 476 SHEET 1 K 5 ASP B 370 GLU B 376 0 SHEET 2 K 5 ARG B 341 ILE B 347 1 N LEU B 344 O ILE B 374 SHEET 3 K 5 MET B 392 ARG B 396 1 O MET B 392 N GLU B 343 SHEET 4 K 5 GLU B 247 LEU B 253 -1 N MET B 250 O HIS B 395 SHEET 5 K 5 TYR B 464 ILE B 470 -1 O LEU B 465 N LEU B 251 SHEET 1 L 2 GLU B 334 LYS B 335 0 SHEET 2 L 2 GLN B 338 PRO B 339 -1 O GLN B 338 N LYS B 335 SHEET 1 M 4 ILE C 6 TRP C 10 0 SHEET 2 M 4 LYS C 193 VAL C 198 1 O THR C 195 N THR C 8 SHEET 3 M 4 TYR C 175 ARG C 180 -1 N PHE C 178 O ILE C 194 SHEET 4 M 4 TRP C 165 LYS C 171 -1 N ILE C 166 O VAL C 179 SHEET 1 N 2 VAL C 38 TYR C 40 0 SHEET 2 N 2 VAL C 46 PRO C 48 -1 O ILE C 47 N LYS C 39 SHEET 1 O 4 SER C 53 HIS C 56 0 SHEET 2 O 4 THR C 62 THR C 66 -1 O THR C 66 N SER C 53 SHEET 3 O 4 GLU C 117 LEU C 122 -1 O LEU C 118 N PHE C 65 SHEET 4 O 4 ILE C 107 ALA C 112 -1 N VAL C 108 O THR C 121 SHEET 1 P 3 LEU C 216 ASN C 220 0 SHEET 2 P 3 MET C 472 SER C 476 -1 O MET C 473 N GLY C 219 SHEET 3 P 3 HIS C 239 LEU C 242 -1 N HIS C 239 O SER C 476 SHEET 1 Q 6 GLN C 288 VAL C 289 0 SHEET 2 Q 6 TYR C 464 ILE C 470 -1 O TYR C 469 N GLN C 288 SHEET 3 Q 6 GLU C 247 LEU C 253 -1 N VAL C 249 O ILE C 467 SHEET 4 Q 6 MET C 392 ARG C 396 -1 O ILE C 393 N ALA C 252 SHEET 5 Q 6 ARG C 341 ILE C 347 1 N GLU C 343 O MET C 392 SHEET 6 Q 6 ASP C 370 GLU C 376 1 O SER C 372 N LEU C 344 SHEET 1 R 2 GLU C 334 LYS C 335 0 SHEET 2 R 2 GLN C 338 PRO C 339 -1 O GLN C 338 N LYS C 335 LINK NI NI A 503 O6 HCT A 511 1555 1555 2.14 LINK NE2 HIS B 416 NI NI B 503 1555 1555 2.25 LINK NI NI B 503 O6 HCT B 511 1555 1555 1.95 LINK NI NI B 503 O3 HCT B 511 1555 1555 2.24 LINK NI NI B 503 O1 HCT B 511 1555 1555 2.07 LINK NE2 HIS C 416 NI NI C 503 1555 1555 2.39 LINK NI NI C 503 O6 HCT C 509 1555 1555 2.41 CISPEP 1 PRO A 3 ASP A 4 0 19.15 CISPEP 2 THR A 23 PRO A 24 0 4.78 CISPEP 3 ARG A 137 PRO A 138 0 7.55 CISPEP 4 ALA A 258 PRO A 259 0 -6.96 CISPEP 5 ALA A 400 PRO A 401 0 2.53 CISPEP 6 ASP A 403 PRO A 404 0 -5.09 CISPEP 7 THR B 23 PRO B 24 0 6.16 CISPEP 8 ARG B 137 PRO B 138 0 2.02 CISPEP 9 ALA B 258 PRO B 259 0 -4.36 CISPEP 10 TYR B 284 GLY B 285 0 22.55 CISPEP 11 GLY B 285 THR B 286 0 20.28 CISPEP 12 ALA B 400 PRO B 401 0 -2.15 CISPEP 13 ASP B 403 PRO B 404 0 0.27 CISPEP 14 THR C 23 PRO C 24 0 9.18 CISPEP 15 ARG C 137 PRO C 138 0 3.96 CISPEP 16 ALA C 258 PRO C 259 0 -9.59 CISPEP 17 ALA C 400 PRO C 401 0 -6.00 CISPEP 18 ASP C 403 PRO C 404 0 3.12 SITE 1 AC1 1 HIS B 416 SITE 1 AC2 1 HIS C 416 SITE 1 AC3 5 THR C 292 LEU C 293 LEU C 455 HIS C 459 SITE 2 AC3 5 TYR C 464 SITE 1 AC4 4 LYS C 330 ASP C 331 ILE C 332 ARG C 365 SITE 1 AC5 2 SER A 57 GLU A 58 SITE 1 AC6 6 GLU B 221 LEU B 226 PHE B 229 LEU B 283 SITE 2 AC6 6 THR B 286 MET B 473 SITE 1 AC7 5 GLN C 385 HIS C 395 ARG C 396 TRP C 398 SITE 2 AC7 5 HIS C 416 SITE 1 AC8 3 GLN A 288 THR B 286 GLN B 288 SITE 1 AC9 2 ARG B 341 LYS C 433 SITE 1 BC1 4 TYR B 271 LYS B 306 PRO B 307 HIS B 459 SITE 1 BC2 6 THR B 8 ALA B 9 LEU B 216 LEU B 217 SITE 2 BC2 6 TYR B 218 LEU B 223 SITE 1 BC3 5 ASP A 93 ASN A 94 ARG A 95 GLN A 96 SITE 2 BC3 5 GLN C 446 SITE 1 BC4 3 GLN A 361 SER A 372 LEU A 373 SITE 1 BC5 2 THR B 441 HIS B 442 SITE 1 BC6 2 LEU B 293 HIS B 459 SITE 1 BC7 5 TYR B 22 ARG B 97 ARG B 137 TRP B 398 SITE 2 BC7 5 HIS B 416 SITE 1 BC8 6 TYR A 22 ARG A 97 TRP A 100 ARG A 137 SITE 2 BC8 6 TRP A 398 HIS A 416 SITE 1 BC9 8 TYR C 22 MET C 27 ARG C 97 TRP C 100 SITE 2 BC9 8 ARG C 137 ARG C 396 TRP C 398 HIS C 416 SITE 1 CC1 7 ASN A 274 LYS A 276 ASP A 280 LYS A 316 SITE 2 CC1 7 GLU A 320 LEU A 326 ARG A 333 SITE 1 CC2 4 PRO B 48 LYS B 52 SER B 53 TRP B 54 SITE 1 CC3 4 THR A 349 GLU A 376 GLU A 377 GLU A 378 SITE 1 CC4 7 ASN B 254 ALA B 256 LYS B 257 ASP B 387 SITE 2 CC4 7 GLY B 388 GLN B 420 GLN B 423 SITE 1 CC5 2 SER B 57 GLU B 58 SITE 1 CC6 6 ALA A 42 ASP A 43 GLN B 41 ALA B 42 SITE 2 CC6 6 TYR B 485 PRO B 487 SITE 1 CC7 2 LYS B 354 GLU B 358 SITE 1 CC8 5 ARG A 389 GLU B 358 GLN B 361 SER B 372 SITE 2 CC8 5 LEU B 373 CRYST1 158.570 158.570 134.940 90.00 90.00 120.00 P 62 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006306 0.003641 0.000000 0.00000 SCALE2 0.000000 0.007282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007411 0.00000