HEADER HYDROLASE 07-JUL-08 3DP9 TITLE CRYSTAL STRUCTURE OF VIBRIO CHOLERAE 5'-METHYLTHIOADENOSINE/S-ADENOSYL TITLE 2 HOMOCYSTEINE NUCLEOSIDASE (MTAN) COMPLEXED WITH BUTYLTHIO-DADME- TITLE 3 IMMUCILLIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MTA/SAH NUCLEOSIDASE; COMPND 3 CHAIN: A, C; COMPND 4 EC: 3.2.2.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 STAR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD-DEST49 KEYWDS VIBRIO CHOLERAE 5'-METHYLTHIOADENOSINE/S-ADENOSYL HOMOCYSTEINE KEYWDS 2 NUCLEOSIDASE, BUTYLTHIO DADME IMMUCILLIN A, MTAN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HO,J.A.GUTIERREZ,T.CROWDER,A.RINALDO-MATTHIS,S.C.ALMO,V.L.SCHRAMM REVDAT 5 21-FEB-24 3DP9 1 REMARK REVDAT 4 25-OCT-17 3DP9 1 REMARK REVDAT 3 13-JUL-11 3DP9 1 VERSN REVDAT 2 26-MAY-09 3DP9 1 JRNL AUTHOR REVDAT 1 10-MAR-09 3DP9 0 JRNL AUTH J.A.GUTIERREZ,T.CROWDER,A.RINALDO-MATTHIS,M.C.HO,S.C.ALMO, JRNL AUTH 2 V.L.SCHRAMM JRNL TITL TRANSITION STATE ANALOGS OF 5'-METHYLTHIOADENOSINE JRNL TITL 2 NUCLEOSIDASE DISRUPT QUORUM SENSING. JRNL REF NAT.CHEM.BIOL. V. 5 251 2009 JRNL REFN ISSN 1552-4450 JRNL PMID 19270684 JRNL DOI 10.1038/NCHEMBIO.153 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 18708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 952 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3410 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.474 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3510 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4760 ; 1.319 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 5.948 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;37.224 ;25.915 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;17.556 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.553 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2594 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1745 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2433 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2287 ; 0.519 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3648 ; 0.909 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1300 ; 1.354 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1112 ; 2.166 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3120 -2.1740 15.6330 REMARK 3 T TENSOR REMARK 3 T11: -0.0746 T22: -0.0200 REMARK 3 T33: -0.0702 T12: -0.0006 REMARK 3 T13: 0.0256 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.2968 L22: 0.7857 REMARK 3 L33: 0.5784 L12: 0.3091 REMARK 3 L13: 0.0880 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.1127 S12: -0.4543 S13: 0.0650 REMARK 3 S21: -0.0697 S22: 0.1405 S23: 0.1299 REMARK 3 S31: 0.0464 S32: -0.1839 S33: -0.2532 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 230 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1090 1.0630 13.3250 REMARK 3 T TENSOR REMARK 3 T11: -0.0733 T22: -0.0395 REMARK 3 T33: -0.0669 T12: -0.0149 REMARK 3 T13: 0.0041 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.9063 L22: 1.1627 REMARK 3 L33: 1.0110 L12: 0.0742 REMARK 3 L13: 0.6001 L23: 0.0408 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.1293 S13: 0.0405 REMARK 3 S21: -0.0203 S22: -0.0665 S23: -0.2176 REMARK 3 S31: -0.0392 S32: 0.1600 S33: 0.0693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.4.0069 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM IODIDE, 20% PEG 3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.16600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 231 REMARK 465 LYS C 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 159 NH1 ARG A 163 2.12 REMARK 500 O LEU A 229 O HOH A 311 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 137 CD PRO C 137 N 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 33.47 -88.72 REMARK 500 ALA A 67 58.92 38.09 REMARK 500 ASP A 150 36.50 -81.92 REMARK 500 CYS A 154 22.97 -155.84 REMARK 500 GLU A 173 -162.21 -164.16 REMARK 500 LEU A 229 1.98 -64.71 REMARK 500 ALA C 67 63.33 33.91 REMARK 500 ASN C 138 -5.60 83.44 REMARK 500 ASP C 150 45.31 -86.36 REMARK 500 CYS C 154 13.94 -154.99 REMARK 500 GLU C 173 -156.24 -159.16 REMARK 500 GLU C 175 -30.68 -130.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BIG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BIG C 301 DBREF 3DP9 A 1 231 UNP Q9KPI8 Q9KPI8_VIBCH 1 231 DBREF 3DP9 C 1 231 UNP Q9KPI8 Q9KPI8_VIBCH 1 231 SEQRES 1 A 231 MET LYS ILE GLY ILE ILE GLY ALA MET GLN GLN GLU VAL SEQRES 2 A 231 ALA ILE LEU LYS ASP LEU ILE GLU ASP VAL GLN GLU VAL SEQRES 3 A 231 ASN GLN ALA GLY CYS THR PHE TYR SER GLY GLN ILE GLN SEQRES 4 A 231 GLY VAL ASP VAL VAL LEU LEU GLN SER GLY ILE GLY LYS SEQRES 5 A 231 VAL SER ALA ALA LEU GLY THR ALA LEU LEU ILE SER GLN SEQRES 6 A 231 TYR ALA PRO ASP VAL VAL ILE ASN THR GLY SER ALA GLY SEQRES 7 A 231 GLY PHE ASP ALA SER LEU ASN VAL GLY ASP VAL VAL ILE SEQRES 8 A 231 SER SER GLU VAL ARG HIS HIS ASP ALA ASP VAL THR ALA SEQRES 9 A 231 PHE GLY TYR GLU ILE GLY GLN MET ALA GLY GLN PRO ALA SEQRES 10 A 231 ALA PHE LYS ALA ASP GLU LYS LEU MET THR VAL ALA GLU SEQRES 11 A 231 GLN ALA LEU ALA GLN LEU PRO ASN THR HIS ALA VAL ARG SEQRES 12 A 231 GLY LEU ILE CYS THR GLY ASP ALA PHE VAL CYS THR ALA SEQRES 13 A 231 GLU ARG GLN GLN PHE ILE ARG GLN HIS PHE PRO SER VAL SEQRES 14 A 231 VAL ALA VAL GLU MET GLU ALA SER ALA ILE ALA GLN THR SEQRES 15 A 231 CYS HIS GLN PHE LYS VAL PRO PHE VAL VAL VAL ARG ALA SEQRES 16 A 231 ILE SER ASP VAL ALA ASP LYS GLU SER PRO LEU SER PHE SEQRES 17 A 231 GLU GLU PHE LEU PRO LEU ALA ALA LYS SER SER SER ALA SEQRES 18 A 231 MET VAL LEU LYS MET VAL GLU LEU LEU LYS SEQRES 1 C 231 MET LYS ILE GLY ILE ILE GLY ALA MET GLN GLN GLU VAL SEQRES 2 C 231 ALA ILE LEU LYS ASP LEU ILE GLU ASP VAL GLN GLU VAL SEQRES 3 C 231 ASN GLN ALA GLY CYS THR PHE TYR SER GLY GLN ILE GLN SEQRES 4 C 231 GLY VAL ASP VAL VAL LEU LEU GLN SER GLY ILE GLY LYS SEQRES 5 C 231 VAL SER ALA ALA LEU GLY THR ALA LEU LEU ILE SER GLN SEQRES 6 C 231 TYR ALA PRO ASP VAL VAL ILE ASN THR GLY SER ALA GLY SEQRES 7 C 231 GLY PHE ASP ALA SER LEU ASN VAL GLY ASP VAL VAL ILE SEQRES 8 C 231 SER SER GLU VAL ARG HIS HIS ASP ALA ASP VAL THR ALA SEQRES 9 C 231 PHE GLY TYR GLU ILE GLY GLN MET ALA GLY GLN PRO ALA SEQRES 10 C 231 ALA PHE LYS ALA ASP GLU LYS LEU MET THR VAL ALA GLU SEQRES 11 C 231 GLN ALA LEU ALA GLN LEU PRO ASN THR HIS ALA VAL ARG SEQRES 12 C 231 GLY LEU ILE CYS THR GLY ASP ALA PHE VAL CYS THR ALA SEQRES 13 C 231 GLU ARG GLN GLN PHE ILE ARG GLN HIS PHE PRO SER VAL SEQRES 14 C 231 VAL ALA VAL GLU MET GLU ALA SER ALA ILE ALA GLN THR SEQRES 15 C 231 CYS HIS GLN PHE LYS VAL PRO PHE VAL VAL VAL ARG ALA SEQRES 16 C 231 ILE SER ASP VAL ALA ASP LYS GLU SER PRO LEU SER PHE SEQRES 17 C 231 GLU GLU PHE LEU PRO LEU ALA ALA LYS SER SER SER ALA SEQRES 18 C 231 MET VAL LEU LYS MET VAL GLU LEU LEU LYS HET BIG A 301 23 HET IOD C 300 1 HET BIG C 301 23 HETNAM BIG (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL) HETNAM 2 BIG METHYL]-4-[(BUTYLSULFANYL)METHYL]PYRROLIDIN-3-OL HETNAM IOD IODIDE ION HETSYN BIG BUTYLTHIO-DADME-IMMUCILLIN A FORMUL 3 BIG 2(C16 H25 N5 O S) FORMUL 4 IOD I 1- FORMUL 6 HOH *66(H2 O) HELIX 1 1 MET A 9 ASP A 18 1 10 HELIX 2 2 GLY A 51 ALA A 67 1 17 HELIX 3 3 VAL A 102 GLY A 106 5 5 HELIX 4 4 ASP A 122 ALA A 134 1 13 HELIX 5 5 THR A 155 PHE A 166 1 12 HELIX 6 6 GLU A 175 LYS A 187 1 13 HELIX 7 7 GLU A 203 LEU A 229 1 27 HELIX 8 8 MET C 9 ASP C 18 1 10 HELIX 9 9 GLY C 51 ALA C 67 1 17 HELIX 10 10 VAL C 102 GLY C 106 5 5 HELIX 11 11 ASP C 122 ALA C 134 1 13 HELIX 12 12 THR C 155 PHE C 166 1 12 HELIX 13 13 GLU C 175 LYS C 187 1 13 HELIX 14 14 GLU C 203 LEU C 230 1 28 SHEET 1 A 9 GLU A 21 GLN A 28 0 SHEET 2 A 9 CYS A 31 ILE A 38 -1 O PHE A 33 N VAL A 26 SHEET 3 A 9 VAL A 41 GLN A 47 -1 O LEU A 45 N TYR A 34 SHEET 4 A 9 ILE A 3 GLY A 7 1 N ILE A 5 O LEU A 46 SHEET 5 A 9 VAL A 70 GLY A 79 1 O ILE A 72 N GLY A 4 SHEET 6 A 9 VAL A 169 GLU A 173 -1 O VAL A 172 N GLY A 78 SHEET 7 A 9 ALA A 141 THR A 148 1 N CYS A 147 O ALA A 171 SHEET 8 A 9 VAL A 89 HIS A 97 1 N ARG A 96 O THR A 148 SHEET 9 A 9 PHE A 119 LYS A 120 -1 O PHE A 119 N VAL A 95 SHEET 1 B 8 GLU A 21 GLN A 28 0 SHEET 2 B 8 CYS A 31 ILE A 38 -1 O PHE A 33 N VAL A 26 SHEET 3 B 8 VAL A 41 GLN A 47 -1 O LEU A 45 N TYR A 34 SHEET 4 B 8 ILE A 3 GLY A 7 1 N ILE A 5 O LEU A 46 SHEET 5 B 8 VAL A 70 GLY A 79 1 O ILE A 72 N GLY A 4 SHEET 6 B 8 PHE A 190 ASP A 198 1 O ASP A 198 N GLY A 79 SHEET 7 B 8 VAL A 89 HIS A 97 -1 N VAL A 90 O ARG A 194 SHEET 8 B 8 PHE A 119 LYS A 120 -1 O PHE A 119 N VAL A 95 SHEET 1 C 9 GLU C 21 GLN C 28 0 SHEET 2 C 9 CYS C 31 ILE C 38 -1 O GLN C 37 N GLU C 21 SHEET 3 C 9 VAL C 41 GLN C 47 -1 O LEU C 45 N TYR C 34 SHEET 4 C 9 LYS C 2 GLY C 7 1 N ILE C 5 O LEU C 46 SHEET 5 C 9 VAL C 70 GLY C 79 1 O VAL C 70 N GLY C 4 SHEET 6 C 9 VAL C 169 GLU C 173 -1 O VAL C 172 N GLY C 78 SHEET 7 C 9 ALA C 141 THR C 148 1 N LEU C 145 O VAL C 170 SHEET 8 C 9 VAL C 89 HIS C 97 1 N ILE C 91 O VAL C 142 SHEET 9 C 9 PHE C 119 LYS C 120 -1 O PHE C 119 N VAL C 95 SHEET 1 D 8 GLU C 21 GLN C 28 0 SHEET 2 D 8 CYS C 31 ILE C 38 -1 O GLN C 37 N GLU C 21 SHEET 3 D 8 VAL C 41 GLN C 47 -1 O LEU C 45 N TYR C 34 SHEET 4 D 8 LYS C 2 GLY C 7 1 N ILE C 5 O LEU C 46 SHEET 5 D 8 VAL C 70 GLY C 79 1 O VAL C 70 N GLY C 4 SHEET 6 D 8 PHE C 190 ASP C 198 1 O ASP C 198 N GLY C 79 SHEET 7 D 8 VAL C 89 HIS C 97 -1 N VAL C 90 O ARG C 194 SHEET 8 D 8 PHE C 119 LYS C 120 -1 O PHE C 119 N VAL C 95 SITE 1 AC1 3 THR A 139 PRO C 137 THR C 139 SITE 1 AC2 16 ILE A 50 SER A 76 ALA A 77 GLY A 78 SITE 2 AC2 16 ALA A 151 PHE A 152 VAL A 153 VAL A 172 SITE 3 AC2 16 GLU A 173 MET A 174 GLU A 175 SER A 197 SITE 4 AC2 16 ASP A 198 PHE A 208 HOH A 305 PHE C 105 SITE 1 AC3 15 ILE C 50 SER C 76 ALA C 77 GLY C 78 SITE 2 AC3 15 ALA C 151 PHE C 152 VAL C 153 VAL C 172 SITE 3 AC3 15 GLU C 173 MET C 174 GLU C 175 SER C 197 SITE 4 AC3 15 ASP C 198 PHE C 208 HOH C 302 CRYST1 67.738 54.332 69.786 90.00 115.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014763 0.000000 0.006994 0.00000 SCALE2 0.000000 0.018405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015856 0.00000