HEADER LIGASE 08-JUL-08 3DPI TITLE CRYSTAL STRUCTURE OF NAD+ SYNTHETASE FROM BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD+ SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: 76819159; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS SSGCID, DECODE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 3 DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 30-AUG-23 3DPI 1 REMARK DBREF REVDAT 4 25-OCT-17 3DPI 1 REMARK REVDAT 3 13-JUL-11 3DPI 1 VERSN REVDAT 2 24-FEB-09 3DPI 1 VERSN REVDAT 1 29-JUL-08 3DPI 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF NAD+ SYNTHETASE FROM BURKHOLDERIA JRNL TITL 2 PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.188 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3824 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5164 ; 1.321 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 9.334 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;32.929 ;21.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;16.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;18.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2941 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2466 ; 0.655 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3878 ; 1.215 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1358 ; 1.675 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1286 ; 2.810 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97607 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PZ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M NACL, 0.1 M REMARK 280 BISTRIS PH 5.5, HAMPTON INDEX SCREEN WELL F10, CRYSTAL ID REMARK 280 109415F10, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.88600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.15750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.15750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.94300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.15750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.15750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 137.82900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.15750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.15750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.94300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.15750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.15750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 137.82900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.88600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.88600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 91 REMARK 465 HIS A 92 REMARK 465 ASP A 93 REMARK 465 ASP A 231 REMARK 465 GLU A 232 REMARK 465 TYR A 274 REMARK 465 THR A 275 REMARK 465 MET A 276 REMARK 465 PHE A 277 REMARK 465 ASP A 278 REMARK 465 TRP A 279 REMARK 465 PRO A 280 REMARK 465 GLY A 281 REMARK 465 HIS A 282 REMARK 465 PRO A 283 REMARK 465 ALA A 284 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 HIS B 92 REMARK 465 ASP B 93 REMARK 465 PHE B 178 REMARK 465 PHE B 179 REMARK 465 THR B 180 REMARK 465 LYS B 181 REMARK 465 PHE B 182 REMARK 465 GLY B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 GLY B 186 REMARK 465 LEU B 213 REMARK 465 VAL B 214 REMARK 465 LEU B 215 REMARK 465 LYS B 216 REMARK 465 THR B 217 REMARK 465 PRO B 218 REMARK 465 THR B 219 REMARK 465 ALA B 220 REMARK 465 ASP B 221 REMARK 465 LEU B 222 REMARK 465 GLU B 223 REMARK 465 THR B 224 REMARK 465 LEU B 225 REMARK 465 ARG B 226 REMARK 465 PRO B 227 REMARK 465 GLN B 228 REMARK 465 ARG B 229 REMARK 465 PRO B 230 REMARK 465 ASP B 231 REMARK 465 GLU B 232 REMARK 465 HIS B 233 REMARK 465 ARG B 267 REMARK 465 HIS B 268 REMARK 465 LYS B 269 REMARK 465 ARG B 270 REMARK 465 ALA B 271 REMARK 465 LEU B 272 REMARK 465 PRO B 273 REMARK 465 TYR B 274 REMARK 465 THR B 275 REMARK 465 MET B 276 REMARK 465 PHE B 277 REMARK 465 ASP B 278 REMARK 465 TRP B 279 REMARK 465 PRO B 280 REMARK 465 GLY B 281 REMARK 465 HIS B 282 REMARK 465 PRO B 283 REMARK 465 ALA B 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 270 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 GLN B 6 CG CD OE1 NE2 REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 41 OG SER A 75 1.52 REMARK 500 NH1 ARG B 46 O ASP B 78 1.90 REMARK 500 OE1 GLU A 16 OH TYR A 263 2.05 REMARK 500 OG1 THR A 266 O HOH A 371 2.12 REMARK 500 OE2 GLU A 30 NH1 ARG A 71 2.17 REMARK 500 O ARG A 11 O HOH A 402 2.18 REMARK 500 O ARG A 73 N GLY A 76 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 12 N - CA - C ANGL. DEV. = -20.6 DEGREES REMARK 500 PRO B 212 C - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 -58.34 -140.12 REMARK 500 ILE A 33 -71.62 -50.40 REMARK 500 ALA A 187 -169.35 -122.00 REMARK 500 ALA B 7 -8.32 -45.31 REMARK 500 HIS B 18 25.83 82.31 REMARK 500 GLU B 211 29.43 148.74 REMARK 500 ALA B 265 24.70 -68.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 0 MET A 1 146.99 REMARK 500 ARG A 11 ALA A 12 -108.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 285 DBREF 3DPI A 0 284 PDB 3DPI 3DPI 0 284 DBREF 3DPI B 0 284 PDB 3DPI 3DPI 0 284 SEQRES 1 A 285 SER MET SER ARG PRO ASP GLN ALA ALA ARG ARG ARG ALA SEQRES 2 A 285 ILE ALA ALA GLU LEU HIS VAL SER PRO THR PHE ASP ALA SEQRES 3 A 285 ARG ASP GLU ALA GLU ARG ARG ILE GLY PHE VAL ALA ASP SEQRES 4 A 285 TYR LEU ARG THR ALA GLY LEU ARG ALA CYS VAL LEU GLY SEQRES 5 A 285 ILE SER GLY GLY ILE ASP SER SER THR ALA GLY ARG LEU SEQRES 6 A 285 ALA GLN LEU ALA VAL GLU ARG LEU ARG ALA SER GLY TYR SEQRES 7 A 285 ASP ALA ARG PHE VAL ALA MET ARG LEU PRO TYR GLY ALA SEQRES 8 A 285 GLN HIS ASP GLU ALA ASP ALA ARG ARG ALA LEU ALA PHE SEQRES 9 A 285 VAL ARG ALA ASP GLU THR LEU THR VAL ASP VAL LYS PRO SEQRES 10 A 285 ALA ALA ASP ALA MET LEU ALA ALA LEU ALA ALA GLY GLY SEQRES 11 A 285 LEU ALA TYR LEU ASP HIS ALA GLN GLN ASP PHE VAL LEU SEQRES 12 A 285 GLY ASN ILE LYS ALA ARG GLU ARG MET ILE ALA GLN TYR SEQRES 13 A 285 ALA VAL ALA GLY ALA ARG ASN GLY VAL VAL ILE GLY THR SEQRES 14 A 285 ASP HIS ALA ALA GLU SER VAL MET GLY PHE PHE THR LYS SEQRES 15 A 285 PHE GLY ASP GLY GLY ALA ASP VAL LEU PRO LEU ALA GLY SEQRES 16 A 285 LEU THR LYS ARG ARG VAL ARG ALA LEU ALA ARG MET LEU SEQRES 17 A 285 GLY ALA ASP GLU PRO LEU VAL LEU LYS THR PRO THR ALA SEQRES 18 A 285 ASP LEU GLU THR LEU ARG PRO GLN ARG PRO ASP GLU HIS SEQRES 19 A 285 ALA TYR GLY ILE THR TYR GLU GLN ILE ASP ASP PHE LEU SEQRES 20 A 285 GLU GLY LYS PRO MET ASP ASP ALA VAL ALA GLU THR VAL SEQRES 21 A 285 LEU ARG PHE TYR ASP ALA THR ARG HIS LYS ARG ALA LEU SEQRES 22 A 285 PRO TYR THR MET PHE ASP TRP PRO GLY HIS PRO ALA SEQRES 1 B 285 SER MET SER ARG PRO ASP GLN ALA ALA ARG ARG ARG ALA SEQRES 2 B 285 ILE ALA ALA GLU LEU HIS VAL SER PRO THR PHE ASP ALA SEQRES 3 B 285 ARG ASP GLU ALA GLU ARG ARG ILE GLY PHE VAL ALA ASP SEQRES 4 B 285 TYR LEU ARG THR ALA GLY LEU ARG ALA CYS VAL LEU GLY SEQRES 5 B 285 ILE SER GLY GLY ILE ASP SER SER THR ALA GLY ARG LEU SEQRES 6 B 285 ALA GLN LEU ALA VAL GLU ARG LEU ARG ALA SER GLY TYR SEQRES 7 B 285 ASP ALA ARG PHE VAL ALA MET ARG LEU PRO TYR GLY ALA SEQRES 8 B 285 GLN HIS ASP GLU ALA ASP ALA ARG ARG ALA LEU ALA PHE SEQRES 9 B 285 VAL ARG ALA ASP GLU THR LEU THR VAL ASP VAL LYS PRO SEQRES 10 B 285 ALA ALA ASP ALA MET LEU ALA ALA LEU ALA ALA GLY GLY SEQRES 11 B 285 LEU ALA TYR LEU ASP HIS ALA GLN GLN ASP PHE VAL LEU SEQRES 12 B 285 GLY ASN ILE LYS ALA ARG GLU ARG MET ILE ALA GLN TYR SEQRES 13 B 285 ALA VAL ALA GLY ALA ARG ASN GLY VAL VAL ILE GLY THR SEQRES 14 B 285 ASP HIS ALA ALA GLU SER VAL MET GLY PHE PHE THR LYS SEQRES 15 B 285 PHE GLY ASP GLY GLY ALA ASP VAL LEU PRO LEU ALA GLY SEQRES 16 B 285 LEU THR LYS ARG ARG VAL ARG ALA LEU ALA ARG MET LEU SEQRES 17 B 285 GLY ALA ASP GLU PRO LEU VAL LEU LYS THR PRO THR ALA SEQRES 18 B 285 ASP LEU GLU THR LEU ARG PRO GLN ARG PRO ASP GLU HIS SEQRES 19 B 285 ALA TYR GLY ILE THR TYR GLU GLN ILE ASP ASP PHE LEU SEQRES 20 B 285 GLU GLY LYS PRO MET ASP ASP ALA VAL ALA GLU THR VAL SEQRES 21 B 285 LEU ARG PHE TYR ASP ALA THR ARG HIS LYS ARG ALA LEU SEQRES 22 B 285 PRO TYR THR MET PHE ASP TRP PRO GLY HIS PRO ALA HET ACT A 285 4 HETNAM ACT ACETATE ION FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *229(H2 O) HELIX 1 1 ASP A 5 LEU A 17 1 13 HELIX 2 2 ASP A 24 GLY A 44 1 21 HELIX 3 3 GLY A 55 SER A 75 1 21 HELIX 4 4 GLU A 94 ARG A 105 1 12 HELIX 5 5 VAL A 114 GLY A 128 1 15 HELIX 6 6 ASP A 134 ARG A 161 1 28 HELIX 7 7 HIS A 170 LYS A 181 1 12 HELIX 8 8 THR A 196 LEU A 207 1 12 HELIX 9 9 ASP A 210 LEU A 215 1 6 HELIX 10 10 PRO A 218 GLU A 223 1 6 HELIX 11 11 THR A 224 ARG A 226 5 3 HELIX 12 12 THR A 238 GLY A 248 1 11 HELIX 13 13 ASP A 252 LEU A 272 1 21 HELIX 14 14 GLN B 6 LEU B 17 1 12 HELIX 15 15 ASP B 24 ALA B 43 1 20 HELIX 16 16 GLY B 55 SER B 75 1 21 HELIX 17 17 GLU B 94 ARG B 105 1 12 HELIX 18 18 VAL B 114 GLY B 128 1 15 HELIX 19 19 ASP B 134 ARG B 161 1 28 HELIX 20 20 HIS B 170 GLY B 177 1 8 HELIX 21 21 THR B 196 GLY B 208 1 13 HELIX 22 22 THR B 238 GLY B 248 1 11 HELIX 23 23 ASP B 252 ALA B 265 1 14 SHEET 1 A 4 GLU A 108 THR A 111 0 SHEET 2 A 4 ARG A 80 ARG A 85 1 N ALA A 83 O GLU A 108 SHEET 3 A 4 ALA A 47 GLY A 51 1 N CYS A 48 O VAL A 82 SHEET 4 A 4 GLY A 163 VAL A 165 1 O VAL A 164 N VAL A 49 SHEET 1 B 4 GLU B 108 THR B 111 0 SHEET 2 B 4 ARG B 80 ARG B 85 1 N ARG B 85 O LEU B 110 SHEET 3 B 4 ALA B 47 GLY B 51 1 N CYS B 48 O VAL B 82 SHEET 4 B 4 GLY B 163 VAL B 165 1 O VAL B 164 N VAL B 49 CISPEP 1 LEU A 272 PRO A 273 0 6.33 SITE 1 AC1 2 ARG A 46 ARG A 161 CRYST1 76.315 76.315 183.772 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013104 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005442 0.00000