HEADER TRANSFERASE 09-JUL-08 3DPM TITLE STRUCTURE OF MATURE CPAF COMPLEXED WITH LACTACYSTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CT_858; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-601; COMPND 5 SYNONYM: CPAF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 3 ORGANISM_TAXID: 813; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS CPAF, LACTACYSTIN, COMPLEX, DIMER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.CHAI,Z.HUANG REVDAT 3 20-NOV-24 3DPM 1 REMARK REVDAT 2 01-NOV-23 3DPM 1 REMARK SEQADV LINK REVDAT 1 13-JAN-09 3DPM 0 JRNL AUTH Z.HUANG,Y.FENG,D.CHEN,X.WU,S.HUANG,X.WANG,X.XIAO,W.LI, JRNL AUTH 2 N.HUANG,L.GU,G.ZHONG,J.CHAI JRNL TITL STRUCTURAL BASIS FOR ACTIVATION AND INHIBITION OF THE JRNL TITL 2 SECRETED CHLAMYDIA PROTEASE CPAF JRNL REF CELL HOST MICROBE V. 4 529 2008 JRNL REFN ISSN 1931-3128 JRNL PMID 19064254 JRNL DOI 10.1016/J.CHOM.2008.10.005 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 47281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1472 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.61300 REMARK 3 B22 (A**2) : -9.07600 REMARK 3 B33 (A**2) : 3.46300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.434 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.366 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.248 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.301 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.488 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 3DOR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0% PEG 4000 (V/V), 0.6M MGCL2, 0.1M REMARK 280 TIRS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.82000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.06500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.06500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.82000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 240 REMARK 465 SER A 241 REMARK 465 MET A 242 REMARK 465 ARG A 243 REMARK 465 SER A 244 REMARK 465 PHE A 245 REMARK 465 PHE A 246 REMARK 465 PRO A 247 REMARK 465 LYS A 248 REMARK 465 LYS A 249 REMARK 465 ASP A 250 REMARK 465 ASP A 251 REMARK 465 ALA A 252 REMARK 465 PHE A 253 REMARK 465 HIS A 254 REMARK 465 ARG A 255 REMARK 465 SER A 256 REMARK 465 SER A 257 REMARK 465 SER A 258 REMARK 465 LEU A 259 REMARK 465 PHE A 260 REMARK 465 TYR A 261 REMARK 465 SER A 262 REMARK 465 PRO A 263 REMARK 465 MET A 264 REMARK 465 VAL A 265 REMARK 465 PRO A 266 REMARK 465 HIS A 267 REMARK 465 PHE A 268 REMARK 465 TRP A 269 REMARK 465 ALA A 270 REMARK 465 GLU A 271 REMARK 465 LEU A 272 REMARK 465 ARG A 273 REMARK 465 ASN A 274 REMARK 465 HIS A 275 REMARK 465 TYR A 276 REMARK 465 ALA A 277 REMARK 465 THR A 278 REMARK 465 SER A 279 REMARK 465 GLY A 280 REMARK 465 LEU A 281 REMARK 465 LYS A 282 REMARK 465 SER A 283 REMARK 465 GLY A 599 REMARK 465 THR A 600 REMARK 465 ILE A 601 REMARK 465 ILE A 602 REMARK 465 LEU A 603 REMARK 465 ALA A 604 REMARK 465 GLU A 605 REMARK 465 ASP A 606 REMARK 465 GLY A 607 REMARK 465 SER A 608 REMARK 465 PHE A 609 REMARK 465 HIS A 610 REMARK 465 HIS A 611 REMARK 465 HIS A 612 REMARK 465 HIS A 613 REMARK 465 HIS A 614 REMARK 465 HIS A 615 REMARK 465 LYS B 240 REMARK 465 SER B 241 REMARK 465 MET B 242 REMARK 465 ARG B 243 REMARK 465 SER B 244 REMARK 465 PHE B 245 REMARK 465 PHE B 246 REMARK 465 PRO B 247 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 ASP B 250 REMARK 465 ASP B 251 REMARK 465 ALA B 252 REMARK 465 PHE B 253 REMARK 465 HIS B 254 REMARK 465 ARG B 255 REMARK 465 SER B 256 REMARK 465 SER B 257 REMARK 465 SER B 258 REMARK 465 LEU B 259 REMARK 465 PHE B 260 REMARK 465 TYR B 261 REMARK 465 SER B 262 REMARK 465 PRO B 263 REMARK 465 MET B 264 REMARK 465 VAL B 265 REMARK 465 PRO B 266 REMARK 465 HIS B 267 REMARK 465 PHE B 268 REMARK 465 TRP B 269 REMARK 465 ALA B 270 REMARK 465 GLU B 271 REMARK 465 LEU B 272 REMARK 465 ARG B 273 REMARK 465 ASN B 274 REMARK 465 HIS B 275 REMARK 465 TYR B 276 REMARK 465 ALA B 277 REMARK 465 THR B 278 REMARK 465 SER B 279 REMARK 465 GLY B 280 REMARK 465 LEU B 281 REMARK 465 LYS B 282 REMARK 465 SER B 283 REMARK 465 GLY B 599 REMARK 465 THR B 600 REMARK 465 ILE B 601 REMARK 465 ILE B 602 REMARK 465 LEU B 603 REMARK 465 ALA B 604 REMARK 465 GLU B 605 REMARK 465 ASP B 606 REMARK 465 GLY B 607 REMARK 465 SER B 608 REMARK 465 PHE B 609 REMARK 465 HIS B 610 REMARK 465 HIS B 611 REMARK 465 HIS B 612 REMARK 465 HIS B 613 REMARK 465 HIS B 614 REMARK 465 HIS B 615 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 70.21 40.35 REMARK 500 PRO A 119 53.73 -66.39 REMARK 500 MET A 136 34.21 -82.16 REMARK 500 SER A 139 69.84 -59.35 REMARK 500 ASN A 167 41.52 -101.02 REMARK 500 ASP A 317 -168.75 -56.68 REMARK 500 ASP A 319 43.51 -107.10 REMARK 500 SER A 334 69.57 -106.20 REMARK 500 TRP A 335 -30.76 -39.66 REMARK 500 ASP A 421 10.44 -141.40 REMARK 500 LEU A 465 80.22 -158.97 REMARK 500 PHE A 472 5.47 59.81 REMARK 500 PHE A 474 99.32 -63.06 REMARK 500 GLU A 495 2.87 -62.57 REMARK 500 SER A 499 -140.83 44.20 REMARK 500 CYS A 500 -17.21 -47.73 REMARK 500 ARG A 520 134.15 -33.63 REMARK 500 ALA A 524 79.84 -110.29 REMARK 500 ASN A 559 -26.65 73.80 REMARK 500 LYS A 578 37.43 27.18 REMARK 500 GLN B 82 -111.20 -77.12 REMARK 500 GLU B 83 111.36 163.95 REMARK 500 ASN B 84 62.34 34.92 REMARK 500 PRO B 119 51.80 -67.74 REMARK 500 MET B 136 53.18 -107.33 REMARK 500 THR B 137 -142.36 -159.28 REMARK 500 SER B 139 77.78 -42.93 REMARK 500 GLU B 141 0.81 -68.29 REMARK 500 ASP B 317 -172.97 -63.50 REMARK 500 ASN B 419 41.69 -99.13 REMARK 500 LEU B 465 78.28 -156.44 REMARK 500 SER B 466 163.95 -42.62 REMARK 500 SER B 499 -143.27 50.33 REMARK 500 ARG B 520 137.36 -38.33 REMARK 500 ASN B 559 -28.58 72.75 REMARK 500 ASN B 597 27.33 44.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 499 23.01 REMARK 500 SER B 499 23.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 IN SOLUTION, LACTACYSTIN IS IN EQUILIBRATION WITH ITS HYDROLIZED REMARK 600 PRODUCT OMURALIDE BY REMOVING THE N-ACETYL CYSTEIN PORTION. THE REMARK 600 LATTER IS DIRECTLY RESPONSIBLE FOR INHIBITING CPAF. THAT IS WHY REMARK 600 SEVERAL ATOMS ARE MISSING IN THIS COORDINATES. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAS A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAS B 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DJA RELATED DB: PDB REMARK 900 THE SAME PROTEIN SOLVED WITH MAD REMARK 900 RELATED ID: 3DOR RELATED DB: PDB REMARK 900 MATURE CPAF REMARK 900 RELATED ID: 3DPN RELATED DB: PDB REMARK 900 CPAF S499A MUTANT DBREF 3DPM A 33 609 UNP O84866 Y858_CHLTR 25 601 DBREF 3DPM B 33 609 UNP O84866 Y858_CHLTR 25 601 SEQADV 3DPM HIS A 610 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS A 611 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS A 612 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS A 613 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS A 614 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS A 615 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS B 610 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS B 611 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS B 612 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS B 613 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS B 614 UNP O84866 EXPRESSION TAG SEQADV 3DPM HIS B 615 UNP O84866 EXPRESSION TAG SEQRES 1 A 583 SER LEU VAL CYS LYS ASN ALA LEU GLN ASP LEU SER PHE SEQRES 2 A 583 LEU GLU HIS LEU LEU GLN VAL LYS TYR ALA PRO LYS THR SEQRES 3 A 583 TRP LYS GLU GLN TYR LEU GLY TRP ASP LEU VAL GLN SER SEQRES 4 A 583 SER VAL SER ALA GLN GLN LYS LEU ARG THR GLN GLU ASN SEQRES 5 A 583 PRO SER THR SER PHE CYS GLN GLN VAL LEU ALA ASP PHE SEQRES 6 A 583 ILE GLY GLY LEU ASN ASP PHE HIS ALA GLY VAL THR PHE SEQRES 7 A 583 PHE ALA ILE GLU SER ALA TYR LEU PRO TYR THR VAL GLN SEQRES 8 A 583 LYS SER SER ASP GLY ARG PHE TYR PHE VAL ASP ILE MET SEQRES 9 A 583 THR PHE SER SER GLU ILE ARG VAL GLY ASP GLU LEU LEU SEQRES 10 A 583 GLU VAL ASP GLY ALA PRO VAL GLN ASP VAL LEU ALA THR SEQRES 11 A 583 LEU TYR GLY SER ASN HIS LYS GLY THR ALA ALA GLU GLU SEQRES 12 A 583 SER ALA ALA LEU ARG THR LEU PHE SER ARG MET ALA SER SEQRES 13 A 583 LEU GLY HIS LYS VAL PRO SER GLY ARG THR THR LEU LYS SEQRES 14 A 583 ILE ARG ARG PRO PHE GLY THR THR ARG GLU VAL ARG VAL SEQRES 15 A 583 LYS TRP ARG TYR VAL PRO GLU GLY VAL GLY ASP LEU ALA SEQRES 16 A 583 THR ILE ALA PRO SER ILE ARG ALA PRO GLN LEU GLN LYS SEQRES 17 A 583 SER MET ARG SER PHE PHE PRO LYS LYS ASP ASP ALA PHE SEQRES 18 A 583 HIS ARG SER SER SER LEU PHE TYR SER PRO MET VAL PRO SEQRES 19 A 583 HIS PHE TRP ALA GLU LEU ARG ASN HIS TYR ALA THR SER SEQRES 20 A 583 GLY LEU LYS SER GLY TYR ASN ILE GLY SER THR ASP GLY SEQRES 21 A 583 PHE LEU PRO VAL ILE GLY PRO VAL ILE TRP GLU SER GLU SEQRES 22 A 583 GLY LEU PHE ARG ALA TYR ILE SER SER VAL THR ASP GLY SEQRES 23 A 583 ASP GLY LYS SER HIS LYS VAL GLY PHE LEU ARG ILE PRO SEQRES 24 A 583 THR TYR SER TRP GLN ASP MET GLU ASP PHE ASP PRO SER SEQRES 25 A 583 GLY PRO PRO PRO TRP GLU GLU PHE ALA LYS ILE ILE GLN SEQRES 26 A 583 VAL PHE SER SER ASN THR GLU ALA LEU ILE ILE ASP GLN SEQRES 27 A 583 THR ASN ASN PRO GLY GLY SER VAL LEU TYR LEU TYR ALA SEQRES 28 A 583 LEU LEU SER MET LEU THR ASP ARG PRO LEU GLU LEU PRO SEQRES 29 A 583 LYS HIS ARG MET ILE LEU THR GLN ASP GLU VAL VAL ASP SEQRES 30 A 583 ALA LEU ASP TRP LEU THR LEU LEU GLU ASN VAL ASP THR SEQRES 31 A 583 ASN VAL GLU SER ARG LEU ALA LEU GLY ASP ASN MET GLU SEQRES 32 A 583 GLY TYR THR VAL ASP LEU GLN VAL ALA GLU TYR LEU LYS SEQRES 33 A 583 SER PHE GLY ARG GLN VAL LEU ASN CYS TRP SER LYS GLY SEQRES 34 A 583 ASP ILE GLU LEU SER THR PRO ILE PRO LEU PHE GLY PHE SEQRES 35 A 583 GLU LYS ILE HIS PRO HIS PRO ARG VAL GLN TYR SER LYS SEQRES 36 A 583 PRO ILE CYS VAL LEU ILE ASN GLU GLN ASP PHE SER CYS SEQRES 37 A 583 ALA ASP PHE PHE PRO VAL VAL LEU LYS ASP ASN ASP ARG SEQRES 38 A 583 ALA LEU ILE VAL GLY THR ARG THR ALA GLY ALA GLY GLY SEQRES 39 A 583 PHE VAL PHE ASN VAL GLN PHE PRO ASN ARG THR GLY ILE SEQRES 40 A 583 LYS THR CYS SER LEU THR GLY SER LEU ALA VAL ARG GLU SEQRES 41 A 583 HIS GLY ALA PHE ILE GLU ASN ILE GLY VAL GLU PRO HIS SEQRES 42 A 583 ILE ASP LEU PRO PHE THR ALA ASN ASP ILE ARG TYR LYS SEQRES 43 A 583 GLY TYR SER GLU TYR LEU ASP LYS VAL LYS LYS LEU VAL SEQRES 44 A 583 CYS GLN LEU ILE ASN ASN ASP GLY THR ILE ILE LEU ALA SEQRES 45 A 583 GLU ASP GLY SER PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 583 SER LEU VAL CYS LYS ASN ALA LEU GLN ASP LEU SER PHE SEQRES 2 B 583 LEU GLU HIS LEU LEU GLN VAL LYS TYR ALA PRO LYS THR SEQRES 3 B 583 TRP LYS GLU GLN TYR LEU GLY TRP ASP LEU VAL GLN SER SEQRES 4 B 583 SER VAL SER ALA GLN GLN LYS LEU ARG THR GLN GLU ASN SEQRES 5 B 583 PRO SER THR SER PHE CYS GLN GLN VAL LEU ALA ASP PHE SEQRES 6 B 583 ILE GLY GLY LEU ASN ASP PHE HIS ALA GLY VAL THR PHE SEQRES 7 B 583 PHE ALA ILE GLU SER ALA TYR LEU PRO TYR THR VAL GLN SEQRES 8 B 583 LYS SER SER ASP GLY ARG PHE TYR PHE VAL ASP ILE MET SEQRES 9 B 583 THR PHE SER SER GLU ILE ARG VAL GLY ASP GLU LEU LEU SEQRES 10 B 583 GLU VAL ASP GLY ALA PRO VAL GLN ASP VAL LEU ALA THR SEQRES 11 B 583 LEU TYR GLY SER ASN HIS LYS GLY THR ALA ALA GLU GLU SEQRES 12 B 583 SER ALA ALA LEU ARG THR LEU PHE SER ARG MET ALA SER SEQRES 13 B 583 LEU GLY HIS LYS VAL PRO SER GLY ARG THR THR LEU LYS SEQRES 14 B 583 ILE ARG ARG PRO PHE GLY THR THR ARG GLU VAL ARG VAL SEQRES 15 B 583 LYS TRP ARG TYR VAL PRO GLU GLY VAL GLY ASP LEU ALA SEQRES 16 B 583 THR ILE ALA PRO SER ILE ARG ALA PRO GLN LEU GLN LYS SEQRES 17 B 583 SER MET ARG SER PHE PHE PRO LYS LYS ASP ASP ALA PHE SEQRES 18 B 583 HIS ARG SER SER SER LEU PHE TYR SER PRO MET VAL PRO SEQRES 19 B 583 HIS PHE TRP ALA GLU LEU ARG ASN HIS TYR ALA THR SER SEQRES 20 B 583 GLY LEU LYS SER GLY TYR ASN ILE GLY SER THR ASP GLY SEQRES 21 B 583 PHE LEU PRO VAL ILE GLY PRO VAL ILE TRP GLU SER GLU SEQRES 22 B 583 GLY LEU PHE ARG ALA TYR ILE SER SER VAL THR ASP GLY SEQRES 23 B 583 ASP GLY LYS SER HIS LYS VAL GLY PHE LEU ARG ILE PRO SEQRES 24 B 583 THR TYR SER TRP GLN ASP MET GLU ASP PHE ASP PRO SER SEQRES 25 B 583 GLY PRO PRO PRO TRP GLU GLU PHE ALA LYS ILE ILE GLN SEQRES 26 B 583 VAL PHE SER SER ASN THR GLU ALA LEU ILE ILE ASP GLN SEQRES 27 B 583 THR ASN ASN PRO GLY GLY SER VAL LEU TYR LEU TYR ALA SEQRES 28 B 583 LEU LEU SER MET LEU THR ASP ARG PRO LEU GLU LEU PRO SEQRES 29 B 583 LYS HIS ARG MET ILE LEU THR GLN ASP GLU VAL VAL ASP SEQRES 30 B 583 ALA LEU ASP TRP LEU THR LEU LEU GLU ASN VAL ASP THR SEQRES 31 B 583 ASN VAL GLU SER ARG LEU ALA LEU GLY ASP ASN MET GLU SEQRES 32 B 583 GLY TYR THR VAL ASP LEU GLN VAL ALA GLU TYR LEU LYS SEQRES 33 B 583 SER PHE GLY ARG GLN VAL LEU ASN CYS TRP SER LYS GLY SEQRES 34 B 583 ASP ILE GLU LEU SER THR PRO ILE PRO LEU PHE GLY PHE SEQRES 35 B 583 GLU LYS ILE HIS PRO HIS PRO ARG VAL GLN TYR SER LYS SEQRES 36 B 583 PRO ILE CYS VAL LEU ILE ASN GLU GLN ASP PHE SER CYS SEQRES 37 B 583 ALA ASP PHE PHE PRO VAL VAL LEU LYS ASP ASN ASP ARG SEQRES 38 B 583 ALA LEU ILE VAL GLY THR ARG THR ALA GLY ALA GLY GLY SEQRES 39 B 583 PHE VAL PHE ASN VAL GLN PHE PRO ASN ARG THR GLY ILE SEQRES 40 B 583 LYS THR CYS SER LEU THR GLY SER LEU ALA VAL ARG GLU SEQRES 41 B 583 HIS GLY ALA PHE ILE GLU ASN ILE GLY VAL GLU PRO HIS SEQRES 42 B 583 ILE ASP LEU PRO PHE THR ALA ASN ASP ILE ARG TYR LYS SEQRES 43 B 583 GLY TYR SER GLU TYR LEU ASP LYS VAL LYS LYS LEU VAL SEQRES 44 B 583 CYS GLN LEU ILE ASN ASN ASP GLY THR ILE ILE LEU ALA SEQRES 45 B 583 GLU ASP GLY SER PHE HIS HIS HIS HIS HIS HIS HET LAS A 800 15 HET LAS B 800 15 HETNAM LAS N-ACETYL-S-({(2R,3S,4R)-3-HYDROXY-2-[(1S)-1-HYDROXY-2- HETNAM 2 LAS METHYLPROPYL]-4-METHYL-5-OXOPYRROLIDIN-2-YL}CARBONYL) HETNAM 3 LAS CYSTEINE HETSYN LAS LACTACYSTIN FORMUL 3 LAS 2(C15 H24 N2 O7 S) FORMUL 5 HOH *309(H2 O) HELIX 1 1 SER A 33 LYS A 53 1 21 HELIX 2 2 PRO A 56 LEU A 64 1 9 HELIX 3 3 ASP A 67 THR A 81 1 15 HELIX 4 4 SER A 86 GLY A 100 1 15 HELIX 5 5 VAL A 156 THR A 162 1 7 HELIX 6 6 THR A 171 PHE A 183 1 13 HELIX 7 7 SER A 188 GLY A 190 5 3 HELIX 8 8 ASP A 225 ALA A 230 1 6 HELIX 9 9 PRO A 231 ILE A 233 5 3 HELIX 10 10 SER A 334 MET A 338 5 5 HELIX 11 11 PRO A 347 THR A 363 1 17 HELIX 12 12 SER A 377 MET A 387 1 11 HELIX 13 13 THR A 403 LEU A 417 1 15 HELIX 14 14 THR A 422 GLY A 431 1 10 HELIX 15 15 ASP A 440 GLY A 461 1 22 HELIX 16 16 PRO A 470 PHE A 474 5 5 HELIX 17 17 SER A 499 ASN A 511 1 13 HELIX 18 18 THR A 571 TYR A 577 1 7 HELIX 19 19 TYR A 580 ASN A 596 1 17 HELIX 20 20 SER B 33 GLN B 51 1 19 HELIX 21 21 PRO B 56 LEU B 64 1 9 HELIX 22 22 ASP B 67 THR B 81 1 15 HELIX 23 23 SER B 86 GLY B 100 1 15 HELIX 24 24 VAL B 156 THR B 162 1 7 HELIX 25 25 THR B 171 THR B 181 1 11 HELIX 26 26 SER B 188 GLY B 190 5 3 HELIX 27 27 ASP B 225 ALA B 230 1 6 HELIX 28 28 PRO B 231 ILE B 233 5 3 HELIX 29 29 SER B 334 MET B 338 5 5 HELIX 30 30 PRO B 347 THR B 363 1 17 HELIX 31 31 SER B 377 SER B 386 1 10 HELIX 32 32 THR B 403 LEU B 417 1 15 HELIX 33 33 THR B 422 GLY B 431 1 10 HELIX 34 34 ASP B 440 GLY B 461 1 22 HELIX 35 35 PRO B 470 PHE B 474 5 5 HELIX 36 36 SER B 499 ASN B 511 1 13 HELIX 37 37 THR B 571 TYR B 577 1 7 HELIX 38 38 TYR B 580 ASN B 597 1 18 SHEET 1 A 3 GLY A 107 PHE A 110 0 SHEET 2 A 3 ILE A 539 THR A 545 -1 O THR A 541 N THR A 109 SHEET 3 A 3 VAL A 528 VAL A 531 -1 N VAL A 531 O CYS A 542 SHEET 1 B 3 SER A 184 MET A 186 0 SHEET 2 B 3 SER A 115 TYR A 117 -1 N ALA A 116 O ARG A 185 SHEET 3 B 3 ARG A 217 VAL A 219 -1 O VAL A 219 N SER A 115 SHEET 1 C 4 TYR A 120 LYS A 124 0 SHEET 2 C 4 PHE A 130 ILE A 135 -1 O ASP A 134 N THR A 121 SHEET 3 C 4 GLU A 147 VAL A 151 -1 O LEU A 148 N PHE A 130 SHEET 4 C 4 ALA A 154 PRO A 155 -1 O ALA A 154 N VAL A 151 SHEET 1 D 5 TYR A 120 LYS A 124 0 SHEET 2 D 5 PHE A 130 ILE A 135 -1 O ASP A 134 N THR A 121 SHEET 3 D 5 GLU A 147 VAL A 151 -1 O LEU A 148 N PHE A 130 SHEET 4 D 5 ARG A 197 ARG A 203 -1 O LYS A 201 N LEU A 149 SHEET 5 D 5 THR A 209 LYS A 215 -1 O VAL A 212 N LEU A 200 SHEET 1 E 7 VAL A 300 GLU A 303 0 SHEET 2 E 7 ALA A 310 THR A 316 -1 O ILE A 312 N ILE A 301 SHEET 3 E 7 SER A 322 ARG A 329 -1 O VAL A 325 N SER A 313 SHEET 4 E 7 ALA A 365 ASP A 369 1 O ASP A 369 N LEU A 328 SHEET 5 E 7 ILE A 489 ILE A 493 1 O CYS A 490 N ILE A 368 SHEET 6 E 7 ALA A 514 GLY A 518 1 O LEU A 515 N VAL A 491 SHEET 7 E 7 ILE A 566 ASP A 567 1 O ILE A 566 N GLY A 518 SHEET 1 F 2 LEU A 393 GLU A 394 0 SHEET 2 F 2 LYS A 476 ILE A 477 -1 O ILE A 477 N LEU A 393 SHEET 1 G 2 LYS A 397 MET A 400 0 SHEET 2 G 2 SER A 547 VAL A 550 -1 O VAL A 550 N LYS A 397 SHEET 1 H 2 ASN A 433 MET A 434 0 SHEET 2 H 2 TYR A 437 THR A 438 -1 O TYR A 437 N MET A 434 SHEET 1 I 3 GLY B 107 PHE B 110 0 SHEET 2 I 3 ILE B 539 THR B 545 -1 O THR B 541 N THR B 109 SHEET 3 I 3 VAL B 528 VAL B 531 -1 N PHE B 529 O LEU B 544 SHEET 1 J 3 SER B 184 MET B 186 0 SHEET 2 J 3 SER B 115 TYR B 117 -1 N ALA B 116 O ARG B 185 SHEET 3 J 3 ARG B 217 VAL B 219 -1 O VAL B 219 N SER B 115 SHEET 1 K 4 TYR B 120 LYS B 124 0 SHEET 2 K 4 PHE B 130 ILE B 135 -1 O VAL B 133 N THR B 121 SHEET 3 K 4 GLU B 147 VAL B 151 -1 O LEU B 148 N PHE B 130 SHEET 4 K 4 ALA B 154 PRO B 155 -1 O ALA B 154 N VAL B 151 SHEET 1 L 5 TYR B 120 LYS B 124 0 SHEET 2 L 5 PHE B 130 ILE B 135 -1 O VAL B 133 N THR B 121 SHEET 3 L 5 GLU B 147 VAL B 151 -1 O LEU B 148 N PHE B 130 SHEET 4 L 5 ARG B 197 ARG B 203 -1 O LYS B 201 N LEU B 149 SHEET 5 L 5 THR B 209 LYS B 215 -1 O VAL B 212 N LEU B 200 SHEET 1 M 7 VAL B 300 GLU B 303 0 SHEET 2 M 7 ALA B 310 THR B 316 -1 O ILE B 312 N ILE B 301 SHEET 3 M 7 SER B 322 ARG B 329 -1 O VAL B 325 N SER B 313 SHEET 4 M 7 ALA B 365 ASP B 369 1 O ILE B 367 N GLY B 326 SHEET 5 M 7 ILE B 489 ILE B 493 1 O LEU B 492 N ILE B 368 SHEET 6 M 7 ALA B 514 GLY B 518 1 O VAL B 517 N VAL B 491 SHEET 7 M 7 ILE B 566 ASP B 567 1 O ILE B 566 N GLY B 518 SHEET 1 N 2 LEU B 393 GLU B 394 0 SHEET 2 N 2 LYS B 476 ILE B 477 -1 O ILE B 477 N LEU B 393 SHEET 1 O 2 LYS B 397 MET B 400 0 SHEET 2 O 2 SER B 547 VAL B 550 -1 O VAL B 550 N LYS B 397 SHEET 1 P 2 ASN B 433 MET B 434 0 SHEET 2 P 2 TYR B 437 THR B 438 -1 O TYR B 437 N MET B 434 LINK OG SER A 499 C18 LAS A 800 1555 1555 1.37 LINK OG SER B 499 C18 LAS B 800 1555 1555 1.36 SITE 1 AC1 10 HIS A 105 GLY A 375 GLY A 376 VAL A 378 SITE 2 AC1 10 SER A 499 CYS A 500 PHE A 503 PHE A 527 SITE 3 AC1 10 VAL A 528 HOH A 907 SITE 1 AC2 8 HIS B 105 GLY B 375 GLY B 376 VAL B 378 SITE 2 AC2 8 SER B 499 CYS B 500 PHE B 527 VAL B 528 CRYST1 63.640 112.070 164.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006093 0.00000