HEADER TRANSFERASE 09-JUL-08 3DPM
TITLE STRUCTURE OF MATURE CPAF COMPLEXED WITH LACTACYSTIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN CT_858;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 25-601;
COMPND 5 SYNONYM: CPAF;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS;
SOURCE 3 ORGANISM_TAXID: 813;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A
KEYWDS CPAF, LACTACYSTIN, COMPLEX, DIMER, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.CHAI,Z.HUANG
REVDAT 3 20-NOV-24 3DPM 1 REMARK
REVDAT 2 01-NOV-23 3DPM 1 REMARK SEQADV LINK
REVDAT 1 13-JAN-09 3DPM 0
JRNL AUTH Z.HUANG,Y.FENG,D.CHEN,X.WU,S.HUANG,X.WANG,X.XIAO,W.LI,
JRNL AUTH 2 N.HUANG,L.GU,G.ZHONG,J.CHAI
JRNL TITL STRUCTURAL BASIS FOR ACTIVATION AND INHIBITION OF THE
JRNL TITL 2 SECRETED CHLAMYDIA PROTEASE CPAF
JRNL REF CELL HOST MICROBE V. 4 529 2008
JRNL REFN ISSN 1931-3128
JRNL PMID 19064254
JRNL DOI 10.1016/J.CHOM.2008.10.005
REMARK 2
REMARK 2 RESOLUTION. 2.35 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.1
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 47281
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.230
REMARK 3 FREE R VALUE : 0.259
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : 1472
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 8220
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 30
REMARK 3 SOLVENT ATOMS : 309
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.61300
REMARK 3 B22 (A**2) : -9.07600
REMARK 3 B33 (A**2) : 3.46300
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.007
REMARK 3 BOND ANGLES (DEGREES) : 1.434
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : 1.366 ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.248 ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : 2.301 ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.488 ; NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 3DPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-08.
REMARK 100 THE DEPOSITION ID IS D_1000048331.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-JUN-07
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BSRF
REMARK 200 BEAMLINE : 3W1A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47963
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350
REMARK 200 RESOLUTION RANGE LOW (A) : 99.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 4.000
REMARK 200 R MERGE (I) : 0.09600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.41000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: SOLVE
REMARK 200 STARTING MODEL: PDB ENTRY 3DOR
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.03
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0% PEG 4000 (V/V), 0.6M MGCL2, 0.1M
REMARK 280 TIRS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.82000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.06500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.03500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.06500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.82000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.03500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 42020 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LYS A 240
REMARK 465 SER A 241
REMARK 465 MET A 242
REMARK 465 ARG A 243
REMARK 465 SER A 244
REMARK 465 PHE A 245
REMARK 465 PHE A 246
REMARK 465 PRO A 247
REMARK 465 LYS A 248
REMARK 465 LYS A 249
REMARK 465 ASP A 250
REMARK 465 ASP A 251
REMARK 465 ALA A 252
REMARK 465 PHE A 253
REMARK 465 HIS A 254
REMARK 465 ARG A 255
REMARK 465 SER A 256
REMARK 465 SER A 257
REMARK 465 SER A 258
REMARK 465 LEU A 259
REMARK 465 PHE A 260
REMARK 465 TYR A 261
REMARK 465 SER A 262
REMARK 465 PRO A 263
REMARK 465 MET A 264
REMARK 465 VAL A 265
REMARK 465 PRO A 266
REMARK 465 HIS A 267
REMARK 465 PHE A 268
REMARK 465 TRP A 269
REMARK 465 ALA A 270
REMARK 465 GLU A 271
REMARK 465 LEU A 272
REMARK 465 ARG A 273
REMARK 465 ASN A 274
REMARK 465 HIS A 275
REMARK 465 TYR A 276
REMARK 465 ALA A 277
REMARK 465 THR A 278
REMARK 465 SER A 279
REMARK 465 GLY A 280
REMARK 465 LEU A 281
REMARK 465 LYS A 282
REMARK 465 SER A 283
REMARK 465 GLY A 599
REMARK 465 THR A 600
REMARK 465 ILE A 601
REMARK 465 ILE A 602
REMARK 465 LEU A 603
REMARK 465 ALA A 604
REMARK 465 GLU A 605
REMARK 465 ASP A 606
REMARK 465 GLY A 607
REMARK 465 SER A 608
REMARK 465 PHE A 609
REMARK 465 HIS A 610
REMARK 465 HIS A 611
REMARK 465 HIS A 612
REMARK 465 HIS A 613
REMARK 465 HIS A 614
REMARK 465 HIS A 615
REMARK 465 LYS B 240
REMARK 465 SER B 241
REMARK 465 MET B 242
REMARK 465 ARG B 243
REMARK 465 SER B 244
REMARK 465 PHE B 245
REMARK 465 PHE B 246
REMARK 465 PRO B 247
REMARK 465 LYS B 248
REMARK 465 LYS B 249
REMARK 465 ASP B 250
REMARK 465 ASP B 251
REMARK 465 ALA B 252
REMARK 465 PHE B 253
REMARK 465 HIS B 254
REMARK 465 ARG B 255
REMARK 465 SER B 256
REMARK 465 SER B 257
REMARK 465 SER B 258
REMARK 465 LEU B 259
REMARK 465 PHE B 260
REMARK 465 TYR B 261
REMARK 465 SER B 262
REMARK 465 PRO B 263
REMARK 465 MET B 264
REMARK 465 VAL B 265
REMARK 465 PRO B 266
REMARK 465 HIS B 267
REMARK 465 PHE B 268
REMARK 465 TRP B 269
REMARK 465 ALA B 270
REMARK 465 GLU B 271
REMARK 465 LEU B 272
REMARK 465 ARG B 273
REMARK 465 ASN B 274
REMARK 465 HIS B 275
REMARK 465 TYR B 276
REMARK 465 ALA B 277
REMARK 465 THR B 278
REMARK 465 SER B 279
REMARK 465 GLY B 280
REMARK 465 LEU B 281
REMARK 465 LYS B 282
REMARK 465 SER B 283
REMARK 465 GLY B 599
REMARK 465 THR B 600
REMARK 465 ILE B 601
REMARK 465 ILE B 602
REMARK 465 LEU B 603
REMARK 465 ALA B 604
REMARK 465 GLU B 605
REMARK 465 ASP B 606
REMARK 465 GLY B 607
REMARK 465 SER B 608
REMARK 465 PHE B 609
REMARK 465 HIS B 610
REMARK 465 HIS B 611
REMARK 465 HIS B 612
REMARK 465 HIS B 613
REMARK 465 HIS B 614
REMARK 465 HIS B 615
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 84 70.21 40.35
REMARK 500 PRO A 119 53.73 -66.39
REMARK 500 MET A 136 34.21 -82.16
REMARK 500 SER A 139 69.84 -59.35
REMARK 500 ASN A 167 41.52 -101.02
REMARK 500 ASP A 317 -168.75 -56.68
REMARK 500 ASP A 319 43.51 -107.10
REMARK 500 SER A 334 69.57 -106.20
REMARK 500 TRP A 335 -30.76 -39.66
REMARK 500 ASP A 421 10.44 -141.40
REMARK 500 LEU A 465 80.22 -158.97
REMARK 500 PHE A 472 5.47 59.81
REMARK 500 PHE A 474 99.32 -63.06
REMARK 500 GLU A 495 2.87 -62.57
REMARK 500 SER A 499 -140.83 44.20
REMARK 500 CYS A 500 -17.21 -47.73
REMARK 500 ARG A 520 134.15 -33.63
REMARK 500 ALA A 524 79.84 -110.29
REMARK 500 ASN A 559 -26.65 73.80
REMARK 500 LYS A 578 37.43 27.18
REMARK 500 GLN B 82 -111.20 -77.12
REMARK 500 GLU B 83 111.36 163.95
REMARK 500 ASN B 84 62.34 34.92
REMARK 500 PRO B 119 51.80 -67.74
REMARK 500 MET B 136 53.18 -107.33
REMARK 500 THR B 137 -142.36 -159.28
REMARK 500 SER B 139 77.78 -42.93
REMARK 500 GLU B 141 0.81 -68.29
REMARK 500 ASP B 317 -172.97 -63.50
REMARK 500 ASN B 419 41.69 -99.13
REMARK 500 LEU B 465 78.28 -156.44
REMARK 500 SER B 466 163.95 -42.62
REMARK 500 SER B 499 -143.27 50.33
REMARK 500 ARG B 520 137.36 -38.33
REMARK 500 ASN B 559 -28.58 72.75
REMARK 500 ASN B 597 27.33 44.38
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 SER A 499 23.01
REMARK 500 SER B 499 23.91
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 IN SOLUTION, LACTACYSTIN IS IN EQUILIBRATION WITH ITS HYDROLIZED
REMARK 600 PRODUCT OMURALIDE BY REMOVING THE N-ACETYL CYSTEIN PORTION. THE
REMARK 600 LATTER IS DIRECTLY RESPONSIBLE FOR INHIBITING CPAF. THAT IS WHY
REMARK 600 SEVERAL ATOMS ARE MISSING IN THIS COORDINATES.
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAS A 800
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAS B 800
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3DJA RELATED DB: PDB
REMARK 900 THE SAME PROTEIN SOLVED WITH MAD
REMARK 900 RELATED ID: 3DOR RELATED DB: PDB
REMARK 900 MATURE CPAF
REMARK 900 RELATED ID: 3DPN RELATED DB: PDB
REMARK 900 CPAF S499A MUTANT
DBREF 3DPM A 33 609 UNP O84866 Y858_CHLTR 25 601
DBREF 3DPM B 33 609 UNP O84866 Y858_CHLTR 25 601
SEQADV 3DPM HIS A 610 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS A 611 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS A 612 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS A 613 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS A 614 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS A 615 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS B 610 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS B 611 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS B 612 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS B 613 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS B 614 UNP O84866 EXPRESSION TAG
SEQADV 3DPM HIS B 615 UNP O84866 EXPRESSION TAG
SEQRES 1 A 583 SER LEU VAL CYS LYS ASN ALA LEU GLN ASP LEU SER PHE
SEQRES 2 A 583 LEU GLU HIS LEU LEU GLN VAL LYS TYR ALA PRO LYS THR
SEQRES 3 A 583 TRP LYS GLU GLN TYR LEU GLY TRP ASP LEU VAL GLN SER
SEQRES 4 A 583 SER VAL SER ALA GLN GLN LYS LEU ARG THR GLN GLU ASN
SEQRES 5 A 583 PRO SER THR SER PHE CYS GLN GLN VAL LEU ALA ASP PHE
SEQRES 6 A 583 ILE GLY GLY LEU ASN ASP PHE HIS ALA GLY VAL THR PHE
SEQRES 7 A 583 PHE ALA ILE GLU SER ALA TYR LEU PRO TYR THR VAL GLN
SEQRES 8 A 583 LYS SER SER ASP GLY ARG PHE TYR PHE VAL ASP ILE MET
SEQRES 9 A 583 THR PHE SER SER GLU ILE ARG VAL GLY ASP GLU LEU LEU
SEQRES 10 A 583 GLU VAL ASP GLY ALA PRO VAL GLN ASP VAL LEU ALA THR
SEQRES 11 A 583 LEU TYR GLY SER ASN HIS LYS GLY THR ALA ALA GLU GLU
SEQRES 12 A 583 SER ALA ALA LEU ARG THR LEU PHE SER ARG MET ALA SER
SEQRES 13 A 583 LEU GLY HIS LYS VAL PRO SER GLY ARG THR THR LEU LYS
SEQRES 14 A 583 ILE ARG ARG PRO PHE GLY THR THR ARG GLU VAL ARG VAL
SEQRES 15 A 583 LYS TRP ARG TYR VAL PRO GLU GLY VAL GLY ASP LEU ALA
SEQRES 16 A 583 THR ILE ALA PRO SER ILE ARG ALA PRO GLN LEU GLN LYS
SEQRES 17 A 583 SER MET ARG SER PHE PHE PRO LYS LYS ASP ASP ALA PHE
SEQRES 18 A 583 HIS ARG SER SER SER LEU PHE TYR SER PRO MET VAL PRO
SEQRES 19 A 583 HIS PHE TRP ALA GLU LEU ARG ASN HIS TYR ALA THR SER
SEQRES 20 A 583 GLY LEU LYS SER GLY TYR ASN ILE GLY SER THR ASP GLY
SEQRES 21 A 583 PHE LEU PRO VAL ILE GLY PRO VAL ILE TRP GLU SER GLU
SEQRES 22 A 583 GLY LEU PHE ARG ALA TYR ILE SER SER VAL THR ASP GLY
SEQRES 23 A 583 ASP GLY LYS SER HIS LYS VAL GLY PHE LEU ARG ILE PRO
SEQRES 24 A 583 THR TYR SER TRP GLN ASP MET GLU ASP PHE ASP PRO SER
SEQRES 25 A 583 GLY PRO PRO PRO TRP GLU GLU PHE ALA LYS ILE ILE GLN
SEQRES 26 A 583 VAL PHE SER SER ASN THR GLU ALA LEU ILE ILE ASP GLN
SEQRES 27 A 583 THR ASN ASN PRO GLY GLY SER VAL LEU TYR LEU TYR ALA
SEQRES 28 A 583 LEU LEU SER MET LEU THR ASP ARG PRO LEU GLU LEU PRO
SEQRES 29 A 583 LYS HIS ARG MET ILE LEU THR GLN ASP GLU VAL VAL ASP
SEQRES 30 A 583 ALA LEU ASP TRP LEU THR LEU LEU GLU ASN VAL ASP THR
SEQRES 31 A 583 ASN VAL GLU SER ARG LEU ALA LEU GLY ASP ASN MET GLU
SEQRES 32 A 583 GLY TYR THR VAL ASP LEU GLN VAL ALA GLU TYR LEU LYS
SEQRES 33 A 583 SER PHE GLY ARG GLN VAL LEU ASN CYS TRP SER LYS GLY
SEQRES 34 A 583 ASP ILE GLU LEU SER THR PRO ILE PRO LEU PHE GLY PHE
SEQRES 35 A 583 GLU LYS ILE HIS PRO HIS PRO ARG VAL GLN TYR SER LYS
SEQRES 36 A 583 PRO ILE CYS VAL LEU ILE ASN GLU GLN ASP PHE SER CYS
SEQRES 37 A 583 ALA ASP PHE PHE PRO VAL VAL LEU LYS ASP ASN ASP ARG
SEQRES 38 A 583 ALA LEU ILE VAL GLY THR ARG THR ALA GLY ALA GLY GLY
SEQRES 39 A 583 PHE VAL PHE ASN VAL GLN PHE PRO ASN ARG THR GLY ILE
SEQRES 40 A 583 LYS THR CYS SER LEU THR GLY SER LEU ALA VAL ARG GLU
SEQRES 41 A 583 HIS GLY ALA PHE ILE GLU ASN ILE GLY VAL GLU PRO HIS
SEQRES 42 A 583 ILE ASP LEU PRO PHE THR ALA ASN ASP ILE ARG TYR LYS
SEQRES 43 A 583 GLY TYR SER GLU TYR LEU ASP LYS VAL LYS LYS LEU VAL
SEQRES 44 A 583 CYS GLN LEU ILE ASN ASN ASP GLY THR ILE ILE LEU ALA
SEQRES 45 A 583 GLU ASP GLY SER PHE HIS HIS HIS HIS HIS HIS
SEQRES 1 B 583 SER LEU VAL CYS LYS ASN ALA LEU GLN ASP LEU SER PHE
SEQRES 2 B 583 LEU GLU HIS LEU LEU GLN VAL LYS TYR ALA PRO LYS THR
SEQRES 3 B 583 TRP LYS GLU GLN TYR LEU GLY TRP ASP LEU VAL GLN SER
SEQRES 4 B 583 SER VAL SER ALA GLN GLN LYS LEU ARG THR GLN GLU ASN
SEQRES 5 B 583 PRO SER THR SER PHE CYS GLN GLN VAL LEU ALA ASP PHE
SEQRES 6 B 583 ILE GLY GLY LEU ASN ASP PHE HIS ALA GLY VAL THR PHE
SEQRES 7 B 583 PHE ALA ILE GLU SER ALA TYR LEU PRO TYR THR VAL GLN
SEQRES 8 B 583 LYS SER SER ASP GLY ARG PHE TYR PHE VAL ASP ILE MET
SEQRES 9 B 583 THR PHE SER SER GLU ILE ARG VAL GLY ASP GLU LEU LEU
SEQRES 10 B 583 GLU VAL ASP GLY ALA PRO VAL GLN ASP VAL LEU ALA THR
SEQRES 11 B 583 LEU TYR GLY SER ASN HIS LYS GLY THR ALA ALA GLU GLU
SEQRES 12 B 583 SER ALA ALA LEU ARG THR LEU PHE SER ARG MET ALA SER
SEQRES 13 B 583 LEU GLY HIS LYS VAL PRO SER GLY ARG THR THR LEU LYS
SEQRES 14 B 583 ILE ARG ARG PRO PHE GLY THR THR ARG GLU VAL ARG VAL
SEQRES 15 B 583 LYS TRP ARG TYR VAL PRO GLU GLY VAL GLY ASP LEU ALA
SEQRES 16 B 583 THR ILE ALA PRO SER ILE ARG ALA PRO GLN LEU GLN LYS
SEQRES 17 B 583 SER MET ARG SER PHE PHE PRO LYS LYS ASP ASP ALA PHE
SEQRES 18 B 583 HIS ARG SER SER SER LEU PHE TYR SER PRO MET VAL PRO
SEQRES 19 B 583 HIS PHE TRP ALA GLU LEU ARG ASN HIS TYR ALA THR SER
SEQRES 20 B 583 GLY LEU LYS SER GLY TYR ASN ILE GLY SER THR ASP GLY
SEQRES 21 B 583 PHE LEU PRO VAL ILE GLY PRO VAL ILE TRP GLU SER GLU
SEQRES 22 B 583 GLY LEU PHE ARG ALA TYR ILE SER SER VAL THR ASP GLY
SEQRES 23 B 583 ASP GLY LYS SER HIS LYS VAL GLY PHE LEU ARG ILE PRO
SEQRES 24 B 583 THR TYR SER TRP GLN ASP MET GLU ASP PHE ASP PRO SER
SEQRES 25 B 583 GLY PRO PRO PRO TRP GLU GLU PHE ALA LYS ILE ILE GLN
SEQRES 26 B 583 VAL PHE SER SER ASN THR GLU ALA LEU ILE ILE ASP GLN
SEQRES 27 B 583 THR ASN ASN PRO GLY GLY SER VAL LEU TYR LEU TYR ALA
SEQRES 28 B 583 LEU LEU SER MET LEU THR ASP ARG PRO LEU GLU LEU PRO
SEQRES 29 B 583 LYS HIS ARG MET ILE LEU THR GLN ASP GLU VAL VAL ASP
SEQRES 30 B 583 ALA LEU ASP TRP LEU THR LEU LEU GLU ASN VAL ASP THR
SEQRES 31 B 583 ASN VAL GLU SER ARG LEU ALA LEU GLY ASP ASN MET GLU
SEQRES 32 B 583 GLY TYR THR VAL ASP LEU GLN VAL ALA GLU TYR LEU LYS
SEQRES 33 B 583 SER PHE GLY ARG GLN VAL LEU ASN CYS TRP SER LYS GLY
SEQRES 34 B 583 ASP ILE GLU LEU SER THR PRO ILE PRO LEU PHE GLY PHE
SEQRES 35 B 583 GLU LYS ILE HIS PRO HIS PRO ARG VAL GLN TYR SER LYS
SEQRES 36 B 583 PRO ILE CYS VAL LEU ILE ASN GLU GLN ASP PHE SER CYS
SEQRES 37 B 583 ALA ASP PHE PHE PRO VAL VAL LEU LYS ASP ASN ASP ARG
SEQRES 38 B 583 ALA LEU ILE VAL GLY THR ARG THR ALA GLY ALA GLY GLY
SEQRES 39 B 583 PHE VAL PHE ASN VAL GLN PHE PRO ASN ARG THR GLY ILE
SEQRES 40 B 583 LYS THR CYS SER LEU THR GLY SER LEU ALA VAL ARG GLU
SEQRES 41 B 583 HIS GLY ALA PHE ILE GLU ASN ILE GLY VAL GLU PRO HIS
SEQRES 42 B 583 ILE ASP LEU PRO PHE THR ALA ASN ASP ILE ARG TYR LYS
SEQRES 43 B 583 GLY TYR SER GLU TYR LEU ASP LYS VAL LYS LYS LEU VAL
SEQRES 44 B 583 CYS GLN LEU ILE ASN ASN ASP GLY THR ILE ILE LEU ALA
SEQRES 45 B 583 GLU ASP GLY SER PHE HIS HIS HIS HIS HIS HIS
HET LAS A 800 15
HET LAS B 800 15
HETNAM LAS N-ACETYL-S-({(2R,3S,4R)-3-HYDROXY-2-[(1S)-1-HYDROXY-2-
HETNAM 2 LAS METHYLPROPYL]-4-METHYL-5-OXOPYRROLIDIN-2-YL}CARBONYL)
HETNAM 3 LAS CYSTEINE
HETSYN LAS LACTACYSTIN
FORMUL 3 LAS 2(C15 H24 N2 O7 S)
FORMUL 5 HOH *309(H2 O)
HELIX 1 1 SER A 33 LYS A 53 1 21
HELIX 2 2 PRO A 56 LEU A 64 1 9
HELIX 3 3 ASP A 67 THR A 81 1 15
HELIX 4 4 SER A 86 GLY A 100 1 15
HELIX 5 5 VAL A 156 THR A 162 1 7
HELIX 6 6 THR A 171 PHE A 183 1 13
HELIX 7 7 SER A 188 GLY A 190 5 3
HELIX 8 8 ASP A 225 ALA A 230 1 6
HELIX 9 9 PRO A 231 ILE A 233 5 3
HELIX 10 10 SER A 334 MET A 338 5 5
HELIX 11 11 PRO A 347 THR A 363 1 17
HELIX 12 12 SER A 377 MET A 387 1 11
HELIX 13 13 THR A 403 LEU A 417 1 15
HELIX 14 14 THR A 422 GLY A 431 1 10
HELIX 15 15 ASP A 440 GLY A 461 1 22
HELIX 16 16 PRO A 470 PHE A 474 5 5
HELIX 17 17 SER A 499 ASN A 511 1 13
HELIX 18 18 THR A 571 TYR A 577 1 7
HELIX 19 19 TYR A 580 ASN A 596 1 17
HELIX 20 20 SER B 33 GLN B 51 1 19
HELIX 21 21 PRO B 56 LEU B 64 1 9
HELIX 22 22 ASP B 67 THR B 81 1 15
HELIX 23 23 SER B 86 GLY B 100 1 15
HELIX 24 24 VAL B 156 THR B 162 1 7
HELIX 25 25 THR B 171 THR B 181 1 11
HELIX 26 26 SER B 188 GLY B 190 5 3
HELIX 27 27 ASP B 225 ALA B 230 1 6
HELIX 28 28 PRO B 231 ILE B 233 5 3
HELIX 29 29 SER B 334 MET B 338 5 5
HELIX 30 30 PRO B 347 THR B 363 1 17
HELIX 31 31 SER B 377 SER B 386 1 10
HELIX 32 32 THR B 403 LEU B 417 1 15
HELIX 33 33 THR B 422 GLY B 431 1 10
HELIX 34 34 ASP B 440 GLY B 461 1 22
HELIX 35 35 PRO B 470 PHE B 474 5 5
HELIX 36 36 SER B 499 ASN B 511 1 13
HELIX 37 37 THR B 571 TYR B 577 1 7
HELIX 38 38 TYR B 580 ASN B 597 1 18
SHEET 1 A 3 GLY A 107 PHE A 110 0
SHEET 2 A 3 ILE A 539 THR A 545 -1 O THR A 541 N THR A 109
SHEET 3 A 3 VAL A 528 VAL A 531 -1 N VAL A 531 O CYS A 542
SHEET 1 B 3 SER A 184 MET A 186 0
SHEET 2 B 3 SER A 115 TYR A 117 -1 N ALA A 116 O ARG A 185
SHEET 3 B 3 ARG A 217 VAL A 219 -1 O VAL A 219 N SER A 115
SHEET 1 C 4 TYR A 120 LYS A 124 0
SHEET 2 C 4 PHE A 130 ILE A 135 -1 O ASP A 134 N THR A 121
SHEET 3 C 4 GLU A 147 VAL A 151 -1 O LEU A 148 N PHE A 130
SHEET 4 C 4 ALA A 154 PRO A 155 -1 O ALA A 154 N VAL A 151
SHEET 1 D 5 TYR A 120 LYS A 124 0
SHEET 2 D 5 PHE A 130 ILE A 135 -1 O ASP A 134 N THR A 121
SHEET 3 D 5 GLU A 147 VAL A 151 -1 O LEU A 148 N PHE A 130
SHEET 4 D 5 ARG A 197 ARG A 203 -1 O LYS A 201 N LEU A 149
SHEET 5 D 5 THR A 209 LYS A 215 -1 O VAL A 212 N LEU A 200
SHEET 1 E 7 VAL A 300 GLU A 303 0
SHEET 2 E 7 ALA A 310 THR A 316 -1 O ILE A 312 N ILE A 301
SHEET 3 E 7 SER A 322 ARG A 329 -1 O VAL A 325 N SER A 313
SHEET 4 E 7 ALA A 365 ASP A 369 1 O ASP A 369 N LEU A 328
SHEET 5 E 7 ILE A 489 ILE A 493 1 O CYS A 490 N ILE A 368
SHEET 6 E 7 ALA A 514 GLY A 518 1 O LEU A 515 N VAL A 491
SHEET 7 E 7 ILE A 566 ASP A 567 1 O ILE A 566 N GLY A 518
SHEET 1 F 2 LEU A 393 GLU A 394 0
SHEET 2 F 2 LYS A 476 ILE A 477 -1 O ILE A 477 N LEU A 393
SHEET 1 G 2 LYS A 397 MET A 400 0
SHEET 2 G 2 SER A 547 VAL A 550 -1 O VAL A 550 N LYS A 397
SHEET 1 H 2 ASN A 433 MET A 434 0
SHEET 2 H 2 TYR A 437 THR A 438 -1 O TYR A 437 N MET A 434
SHEET 1 I 3 GLY B 107 PHE B 110 0
SHEET 2 I 3 ILE B 539 THR B 545 -1 O THR B 541 N THR B 109
SHEET 3 I 3 VAL B 528 VAL B 531 -1 N PHE B 529 O LEU B 544
SHEET 1 J 3 SER B 184 MET B 186 0
SHEET 2 J 3 SER B 115 TYR B 117 -1 N ALA B 116 O ARG B 185
SHEET 3 J 3 ARG B 217 VAL B 219 -1 O VAL B 219 N SER B 115
SHEET 1 K 4 TYR B 120 LYS B 124 0
SHEET 2 K 4 PHE B 130 ILE B 135 -1 O VAL B 133 N THR B 121
SHEET 3 K 4 GLU B 147 VAL B 151 -1 O LEU B 148 N PHE B 130
SHEET 4 K 4 ALA B 154 PRO B 155 -1 O ALA B 154 N VAL B 151
SHEET 1 L 5 TYR B 120 LYS B 124 0
SHEET 2 L 5 PHE B 130 ILE B 135 -1 O VAL B 133 N THR B 121
SHEET 3 L 5 GLU B 147 VAL B 151 -1 O LEU B 148 N PHE B 130
SHEET 4 L 5 ARG B 197 ARG B 203 -1 O LYS B 201 N LEU B 149
SHEET 5 L 5 THR B 209 LYS B 215 -1 O VAL B 212 N LEU B 200
SHEET 1 M 7 VAL B 300 GLU B 303 0
SHEET 2 M 7 ALA B 310 THR B 316 -1 O ILE B 312 N ILE B 301
SHEET 3 M 7 SER B 322 ARG B 329 -1 O VAL B 325 N SER B 313
SHEET 4 M 7 ALA B 365 ASP B 369 1 O ILE B 367 N GLY B 326
SHEET 5 M 7 ILE B 489 ILE B 493 1 O LEU B 492 N ILE B 368
SHEET 6 M 7 ALA B 514 GLY B 518 1 O VAL B 517 N VAL B 491
SHEET 7 M 7 ILE B 566 ASP B 567 1 O ILE B 566 N GLY B 518
SHEET 1 N 2 LEU B 393 GLU B 394 0
SHEET 2 N 2 LYS B 476 ILE B 477 -1 O ILE B 477 N LEU B 393
SHEET 1 O 2 LYS B 397 MET B 400 0
SHEET 2 O 2 SER B 547 VAL B 550 -1 O VAL B 550 N LYS B 397
SHEET 1 P 2 ASN B 433 MET B 434 0
SHEET 2 P 2 TYR B 437 THR B 438 -1 O TYR B 437 N MET B 434
LINK OG SER A 499 C18 LAS A 800 1555 1555 1.37
LINK OG SER B 499 C18 LAS B 800 1555 1555 1.36
SITE 1 AC1 10 HIS A 105 GLY A 375 GLY A 376 VAL A 378
SITE 2 AC1 10 SER A 499 CYS A 500 PHE A 503 PHE A 527
SITE 3 AC1 10 VAL A 528 HOH A 907
SITE 1 AC2 8 HIS B 105 GLY B 375 GLY B 376 VAL B 378
SITE 2 AC2 8 SER B 499 CYS B 500 PHE B 527 VAL B 528
CRYST1 63.640 112.070 164.130 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015713 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008923 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006093 0.00000