data_3DQ1 # _entry.id 3DQ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DQ1 pdb_00003dq1 10.2210/pdb3dq1/pdb RCSB RCSB048345 ? ? WWPDB D_1000048345 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-08-30 5 'Structure model' 1 4 2023-11-15 6 'Structure model' 1 5 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 6 'Structure model' pdbx_entry_details 10 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_chem_comp_atom.atom_id' 6 5 'Structure model' '_chem_comp_bond.atom_id_2' 7 6 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.entry_id 3DQ1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1HUY unspecified 'CRYSTAL STRUCTURE OF CITRINE, AN IMPROVED YELLOW VARIANT OF GREEN FLUORESCENT PROTEIN' PDB 1YFP unspecified 'CRYSTAL STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP, P21212 SPACE GROUP' PDB 2YFP unspecified 'CRYSTAL STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP, P212121 SPACE GROUP' PDB 1F0B unspecified 'CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q' PDB 1F09 unspecified 'CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q WITH TWO BOUND IODIDES' PDB 3DPW unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures ; PDB 3DPX unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures ; PDB 3DPZ unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 3: Structure 25 in a Series of 26 High Pressure Structures ; PDB 3DQ2 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures ; PDB 3DQ3 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 2500 Atmospheres: Structure 22 in a Series of 26 High Pressure Structures ; PDB 3DQ4 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 2: Structure 20 in a Series of 26 High Pressure Structures ; PDB 3DQ5 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures ; PDB 3DQ6 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures ; PDB 3DQ7 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 1: Structure 17 in a Series of 26 High Pressure Structures ; PDB 3DQ8 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures ; PDB 3DQ9 unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 1: Structure 15 in a Series of 26 High Pressure Structures ; PDB 3DQA unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 4: Structure 14 in a Series of 26 High Pressure Structures ; PDB 3DQC unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 3: Structure 13 in a Series of 26 High Pressure Structures ; PDB 3DQD unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 2: Structure 12 in a Series of 26 High Pressure Structures ; PDB 3DQE unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 1: Structure 11 in a Series of 26 High Pressure Structures ; PDB 3DQF unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 6: Structure 10 in a Series of 26 High Pressure Structures ; PDB 3DQH unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 5: Structure 9 in a Series of 26 High Pressure Structures ; PDB 3DQI unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures ; PDB 3DQJ unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 3: Structure 7 in a Series of 26 High Pressure Structures ; PDB 3DQK unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 2: Structure 6 in a Series of 26 High Pressure Structures ; PDB 3DQL unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 1: Structure 5 in a Series of 26 High Pressure Structures ; PDB 3DQM unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 750 Atmospheres: Structure 4 in a Series of 26 High Pressure Structures ; PDB 3DQN unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 500 Atmospheres: Structure 3 in a Series of 26 High Pressure Structures ; PDB 3DQO unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures ; PDB 3DQU unspecified ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 1: Structure 20 in a Series of 26 High Pressure Structures ; # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barstow, B.' 1 'Kim, C.U.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.' Proc.Natl.Acad.Sci.Usa 105 13362 13366 2008 PNASA6 US 0027-8424 0040 ? 18768811 10.1073/pnas.0802252105 1 'High-pressure cooling of protein crystals without cryoprotectants.' 'Acta Crystallogr.,Sect.D' 61 881 890 2005 ABCRE6 DK 0907-4449 0766 ? 15983410 10.1107/S090744490500836X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barstow, B.' 1 ? primary 'Ando, N.' 2 ? primary 'Kim, C.U.' 3 ? primary 'Gruner, S.M.' 4 ? 1 'Kim, C.U.' 5 ? 1 'Kapfer, R.' 6 ? 1 'Gruner, S.M.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Green fluorescent protein' 27393.916 1 ? 'S65G, V68L, Q69M, S72A, T203Y' ? ? 2 water nat water 18.015 190 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GDDPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF(CR2)LMCFAR YPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIM ADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGM DELYK ; _entity_poly.pdbx_seq_one_letter_code_can ;GDDPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGYGLMCFARYP DHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMAD KQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGMDE LYK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 ASP n 1 4 PRO n 1 5 MET n 1 6 VAL n 1 7 SER n 1 8 LYS n 1 9 GLY n 1 10 GLU n 1 11 GLU n 1 12 LEU n 1 13 PHE n 1 14 THR n 1 15 GLY n 1 16 VAL n 1 17 VAL n 1 18 PRO n 1 19 ILE n 1 20 LEU n 1 21 VAL n 1 22 GLU n 1 23 LEU n 1 24 ASP n 1 25 GLY n 1 26 ASP n 1 27 VAL n 1 28 ASN n 1 29 GLY n 1 30 HIS n 1 31 LYS n 1 32 PHE n 1 33 SER n 1 34 VAL n 1 35 SER n 1 36 GLY n 1 37 GLU n 1 38 GLY n 1 39 GLU n 1 40 GLY n 1 41 ASP n 1 42 ALA n 1 43 THR n 1 44 TYR n 1 45 GLY n 1 46 LYS n 1 47 LEU n 1 48 THR n 1 49 LEU n 1 50 LYS n 1 51 PHE n 1 52 ILE n 1 53 CYS n 1 54 THR n 1 55 THR n 1 56 GLY n 1 57 LYS n 1 58 LEU n 1 59 PRO n 1 60 VAL n 1 61 PRO n 1 62 TRP n 1 63 PRO n 1 64 THR n 1 65 LEU n 1 66 VAL n 1 67 THR n 1 68 THR n 1 69 PHE n 1 70 CR2 n 1 71 LEU n 1 72 MET n 1 73 CYS n 1 74 PHE n 1 75 ALA n 1 76 ARG n 1 77 TYR n 1 78 PRO n 1 79 ASP n 1 80 HIS n 1 81 MET n 1 82 LYS n 1 83 GLN n 1 84 HIS n 1 85 ASP n 1 86 PHE n 1 87 PHE n 1 88 LYS n 1 89 SER n 1 90 ALA n 1 91 MET n 1 92 PRO n 1 93 GLU n 1 94 GLY n 1 95 TYR n 1 96 VAL n 1 97 GLN n 1 98 GLU n 1 99 ARG n 1 100 THR n 1 101 ILE n 1 102 PHE n 1 103 PHE n 1 104 LYS n 1 105 ASP n 1 106 ASP n 1 107 GLY n 1 108 ASN n 1 109 TYR n 1 110 LYS n 1 111 THR n 1 112 ARG n 1 113 ALA n 1 114 GLU n 1 115 VAL n 1 116 LYS n 1 117 PHE n 1 118 GLU n 1 119 GLY n 1 120 ASP n 1 121 THR n 1 122 LEU n 1 123 VAL n 1 124 ASN n 1 125 ARG n 1 126 ILE n 1 127 GLU n 1 128 LEU n 1 129 LYS n 1 130 GLY n 1 131 ILE n 1 132 ASP n 1 133 PHE n 1 134 LYS n 1 135 GLU n 1 136 ASP n 1 137 GLY n 1 138 ASN n 1 139 ILE n 1 140 LEU n 1 141 GLY n 1 142 HIS n 1 143 LYS n 1 144 LEU n 1 145 GLU n 1 146 TYR n 1 147 ASN n 1 148 TYR n 1 149 ASN n 1 150 SER n 1 151 HIS n 1 152 ASN n 1 153 VAL n 1 154 TYR n 1 155 ILE n 1 156 MET n 1 157 ALA n 1 158 ASP n 1 159 LYS n 1 160 GLN n 1 161 LYS n 1 162 ASN n 1 163 GLY n 1 164 ILE n 1 165 LYS n 1 166 VAL n 1 167 ASN n 1 168 PHE n 1 169 LYS n 1 170 ILE n 1 171 ARG n 1 172 HIS n 1 173 ASN n 1 174 ILE n 1 175 GLU n 1 176 ASP n 1 177 GLY n 1 178 SER n 1 179 VAL n 1 180 GLN n 1 181 LEU n 1 182 ALA n 1 183 ASP n 1 184 HIS n 1 185 TYR n 1 186 GLN n 1 187 GLN n 1 188 ASN n 1 189 THR n 1 190 PRO n 1 191 ILE n 1 192 GLY n 1 193 ASP n 1 194 GLY n 1 195 PRO n 1 196 VAL n 1 197 LEU n 1 198 LEU n 1 199 PRO n 1 200 ASP n 1 201 ASN n 1 202 HIS n 1 203 TYR n 1 204 LEU n 1 205 SER n 1 206 TYR n 1 207 GLN n 1 208 SER n 1 209 ALA n 1 210 LEU n 1 211 SER n 1 212 LYS n 1 213 ASP n 1 214 PRO n 1 215 ASN n 1 216 GLU n 1 217 LYS n 1 218 ARG n 1 219 ASP n 1 220 HIS n 1 221 MET n 1 222 VAL n 1 223 LEU n 1 224 LEU n 1 225 GLU n 1 226 PHE n 1 227 VAL n 1 228 THR n 1 229 ALA n 1 230 ALA n 1 231 GLY n 1 232 ILE n 1 233 THR n 1 234 LEU n 1 235 GLY n 1 236 MET n 1 237 ASP n 1 238 GLU n 1 239 LEU n 1 240 TYR n 1 241 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Jellyfish _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GFP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aequorea victoria' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6100 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CR2 'L-peptide linking' n '{(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid' 'CHROMOPHORE (GLY-TYR-GLY)' 'C13 H13 N3 O4' 275.260 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 ASP 2 -3 ? ? ? A . n A 1 3 ASP 3 -2 -2 ASP ASP A . n A 1 4 PRO 4 -1 -1 PRO PRO A . n A 1 5 MET 5 0 0 MET MET A . n A 1 6 VAL 6 1 1 VAL VAL A . n A 1 7 SER 7 2 2 SER SER A . n A 1 8 LYS 8 3 3 LYS LYS A . n A 1 9 GLY 9 4 4 GLY GLY A . n A 1 10 GLU 10 5 5 GLU GLU A . n A 1 11 GLU 11 6 6 GLU GLU A . n A 1 12 LEU 12 7 7 LEU LEU A . n A 1 13 PHE 13 8 8 PHE PHE A . n A 1 14 THR 14 9 9 THR THR A . n A 1 15 GLY 15 10 10 GLY GLY A . n A 1 16 VAL 16 11 11 VAL VAL A . n A 1 17 VAL 17 12 12 VAL VAL A . n A 1 18 PRO 18 13 13 PRO PRO A . n A 1 19 ILE 19 14 14 ILE ILE A . n A 1 20 LEU 20 15 15 LEU LEU A . n A 1 21 VAL 21 16 16 VAL VAL A . n A 1 22 GLU 22 17 17 GLU GLU A . n A 1 23 LEU 23 18 18 LEU LEU A . n A 1 24 ASP 24 19 19 ASP ASP A . n A 1 25 GLY 25 20 20 GLY GLY A . n A 1 26 ASP 26 21 21 ASP ASP A . n A 1 27 VAL 27 22 22 VAL VAL A . n A 1 28 ASN 28 23 23 ASN ASN A . n A 1 29 GLY 29 24 24 GLY GLY A . n A 1 30 HIS 30 25 25 HIS HIS A . n A 1 31 LYS 31 26 26 LYS LYS A . n A 1 32 PHE 32 27 27 PHE PHE A . n A 1 33 SER 33 28 28 SER SER A . n A 1 34 VAL 34 29 29 VAL VAL A . n A 1 35 SER 35 30 30 SER SER A . n A 1 36 GLY 36 31 31 GLY GLY A . n A 1 37 GLU 37 32 32 GLU GLU A . n A 1 38 GLY 38 33 33 GLY GLY A . n A 1 39 GLU 39 34 34 GLU GLU A . n A 1 40 GLY 40 35 35 GLY GLY A . n A 1 41 ASP 41 36 36 ASP ASP A . n A 1 42 ALA 42 37 37 ALA ALA A . n A 1 43 THR 43 38 38 THR THR A . n A 1 44 TYR 44 39 39 TYR TYR A . n A 1 45 GLY 45 40 40 GLY GLY A . n A 1 46 LYS 46 41 41 LYS LYS A . n A 1 47 LEU 47 42 42 LEU LEU A . n A 1 48 THR 48 43 43 THR THR A . n A 1 49 LEU 49 44 44 LEU LEU A . n A 1 50 LYS 50 45 45 LYS LYS A . n A 1 51 PHE 51 46 46 PHE PHE A . n A 1 52 ILE 52 47 47 ILE ILE A . n A 1 53 CYS 53 48 48 CYS CYS A . n A 1 54 THR 54 49 49 THR THR A . n A 1 55 THR 55 50 50 THR THR A . n A 1 56 GLY 56 51 51 GLY GLY A . n A 1 57 LYS 57 52 52 LYS LYS A . n A 1 58 LEU 58 53 53 LEU LEU A . n A 1 59 PRO 59 54 54 PRO PRO A . n A 1 60 VAL 60 55 55 VAL VAL A . n A 1 61 PRO 61 56 56 PRO PRO A . n A 1 62 TRP 62 57 57 TRP TRP A . n A 1 63 PRO 63 58 58 PRO PRO A . n A 1 64 THR 64 59 59 THR THR A . n A 1 65 LEU 65 60 60 LEU LEU A . n A 1 66 VAL 66 61 61 VAL VAL A . n A 1 67 THR 67 62 62 THR THR A . n A 1 68 THR 68 63 63 THR THR A . n A 1 69 PHE 69 64 64 PHE PHE A . n A 1 70 CR2 70 66 66 CR2 CR2 A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 MET 72 69 69 MET MET A . n A 1 73 CYS 73 70 70 CYS CYS A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 ALA 75 72 72 ALA ALA A . n A 1 76 ARG 76 73 73 ARG ARG A . n A 1 77 TYR 77 74 74 TYR TYR A . n A 1 78 PRO 78 75 75 PRO PRO A . n A 1 79 ASP 79 76 76 ASP ASP A . n A 1 80 HIS 80 77 77 HIS HIS A . n A 1 81 MET 81 78 78 MET MET A . n A 1 82 LYS 82 79 79 LYS LYS A . n A 1 83 GLN 83 80 80 GLN GLN A . n A 1 84 HIS 84 81 81 HIS HIS A . n A 1 85 ASP 85 82 82 ASP ASP A . n A 1 86 PHE 86 83 83 PHE PHE A . n A 1 87 PHE 87 84 84 PHE PHE A . n A 1 88 LYS 88 85 85 LYS LYS A . n A 1 89 SER 89 86 86 SER SER A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 MET 91 88 88 MET MET A . n A 1 92 PRO 92 89 89 PRO PRO A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 GLY 94 91 91 GLY GLY A . n A 1 95 TYR 95 92 92 TYR TYR A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 GLN 97 94 94 GLN GLN A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 ARG 99 96 96 ARG ARG A . n A 1 100 THR 100 97 97 THR THR A . n A 1 101 ILE 101 98 98 ILE ILE A . n A 1 102 PHE 102 99 99 PHE PHE A . n A 1 103 PHE 103 100 100 PHE PHE A . n A 1 104 LYS 104 101 101 LYS LYS A . n A 1 105 ASP 105 102 102 ASP ASP A . n A 1 106 ASP 106 103 103 ASP ASP A . n A 1 107 GLY 107 104 104 GLY GLY A . n A 1 108 ASN 108 105 105 ASN ASN A . n A 1 109 TYR 109 106 106 TYR TYR A . n A 1 110 LYS 110 107 107 LYS LYS A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 ARG 112 109 109 ARG ARG A . n A 1 113 ALA 113 110 110 ALA ALA A . n A 1 114 GLU 114 111 111 GLU GLU A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 LYS 116 113 113 LYS LYS A . n A 1 117 PHE 117 114 114 PHE PHE A . n A 1 118 GLU 118 115 115 GLU GLU A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 THR 121 118 118 THR THR A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 VAL 123 120 120 VAL VAL A . n A 1 124 ASN 124 121 121 ASN ASN A . n A 1 125 ARG 125 122 122 ARG ARG A . n A 1 126 ILE 126 123 123 ILE ILE A . n A 1 127 GLU 127 124 124 GLU GLU A . n A 1 128 LEU 128 125 125 LEU LEU A . n A 1 129 LYS 129 126 126 LYS LYS A . n A 1 130 GLY 130 127 127 GLY GLY A . n A 1 131 ILE 131 128 128 ILE ILE A . n A 1 132 ASP 132 129 129 ASP ASP A . n A 1 133 PHE 133 130 130 PHE PHE A . n A 1 134 LYS 134 131 131 LYS LYS A . n A 1 135 GLU 135 132 132 GLU GLU A . n A 1 136 ASP 136 133 133 ASP ASP A . n A 1 137 GLY 137 134 134 GLY GLY A . n A 1 138 ASN 138 135 135 ASN ASN A . n A 1 139 ILE 139 136 136 ILE ILE A . n A 1 140 LEU 140 137 137 LEU LEU A . n A 1 141 GLY 141 138 138 GLY GLY A . n A 1 142 HIS 142 139 139 HIS HIS A . n A 1 143 LYS 143 140 140 LYS LYS A . n A 1 144 LEU 144 141 141 LEU LEU A . n A 1 145 GLU 145 142 142 GLU GLU A . n A 1 146 TYR 146 143 143 TYR TYR A . n A 1 147 ASN 147 144 144 ASN ASN A . n A 1 148 TYR 148 145 145 TYR TYR A . n A 1 149 ASN 149 146 146 ASN ASN A . n A 1 150 SER 150 147 147 SER SER A . n A 1 151 HIS 151 148 148 HIS HIS A . n A 1 152 ASN 152 149 149 ASN ASN A . n A 1 153 VAL 153 150 150 VAL VAL A . n A 1 154 TYR 154 151 151 TYR TYR A . n A 1 155 ILE 155 152 152 ILE ILE A . n A 1 156 MET 156 153 153 MET MET A . n A 1 157 ALA 157 154 154 ALA ALA A . n A 1 158 ASP 158 155 155 ASP ASP A . n A 1 159 LYS 159 156 156 LYS LYS A . n A 1 160 GLN 160 157 157 GLN GLN A . n A 1 161 LYS 161 158 158 LYS LYS A . n A 1 162 ASN 162 159 159 ASN ASN A . n A 1 163 GLY 163 160 160 GLY GLY A . n A 1 164 ILE 164 161 161 ILE ILE A . n A 1 165 LYS 165 162 162 LYS LYS A . n A 1 166 VAL 166 163 163 VAL VAL A . n A 1 167 ASN 167 164 164 ASN ASN A . n A 1 168 PHE 168 165 165 PHE PHE A . n A 1 169 LYS 169 166 166 LYS LYS A . n A 1 170 ILE 170 167 167 ILE ILE A . n A 1 171 ARG 171 168 168 ARG ARG A . n A 1 172 HIS 172 169 169 HIS HIS A . n A 1 173 ASN 173 170 170 ASN ASN A . n A 1 174 ILE 174 171 171 ILE ILE A . n A 1 175 GLU 175 172 172 GLU GLU A . n A 1 176 ASP 176 173 173 ASP ASP A . n A 1 177 GLY 177 174 174 GLY GLY A . n A 1 178 SER 178 175 175 SER SER A . n A 1 179 VAL 179 176 176 VAL VAL A . n A 1 180 GLN 180 177 177 GLN GLN A . n A 1 181 LEU 181 178 178 LEU LEU A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 ASP 183 180 180 ASP ASP A . n A 1 184 HIS 184 181 181 HIS HIS A . n A 1 185 TYR 185 182 182 TYR TYR A . n A 1 186 GLN 186 183 183 GLN GLN A . n A 1 187 GLN 187 184 184 GLN GLN A . n A 1 188 ASN 188 185 185 ASN ASN A . n A 1 189 THR 189 186 186 THR THR A . n A 1 190 PRO 190 187 187 PRO PRO A . n A 1 191 ILE 191 188 188 ILE ILE A . n A 1 192 GLY 192 189 189 GLY GLY A . n A 1 193 ASP 193 190 190 ASP ASP A . n A 1 194 GLY 194 191 191 GLY GLY A . n A 1 195 PRO 195 192 192 PRO PRO A . n A 1 196 VAL 196 193 193 VAL VAL A . n A 1 197 LEU 197 194 194 LEU LEU A . n A 1 198 LEU 198 195 195 LEU LEU A . n A 1 199 PRO 199 196 196 PRO PRO A . n A 1 200 ASP 200 197 197 ASP ASP A . n A 1 201 ASN 201 198 198 ASN ASN A . n A 1 202 HIS 202 199 199 HIS HIS A . n A 1 203 TYR 203 200 200 TYR TYR A . n A 1 204 LEU 204 201 201 LEU LEU A . n A 1 205 SER 205 202 202 SER SER A . n A 1 206 TYR 206 203 203 TYR TYR A . n A 1 207 GLN 207 204 204 GLN GLN A . n A 1 208 SER 208 205 205 SER SER A . n A 1 209 ALA 209 206 206 ALA ALA A . n A 1 210 LEU 210 207 207 LEU LEU A . n A 1 211 SER 211 208 208 SER SER A . n A 1 212 LYS 212 209 209 LYS LYS A . n A 1 213 ASP 213 210 210 ASP ASP A . n A 1 214 PRO 214 211 211 PRO PRO A . n A 1 215 ASN 215 212 212 ASN ASN A . n A 1 216 GLU 216 213 213 GLU GLU A . n A 1 217 LYS 217 214 214 LYS LYS A . n A 1 218 ARG 218 215 215 ARG ARG A . n A 1 219 ASP 219 216 216 ASP ASP A . n A 1 220 HIS 220 217 217 HIS HIS A . n A 1 221 MET 221 218 218 MET MET A . n A 1 222 VAL 222 219 219 VAL VAL A . n A 1 223 LEU 223 220 220 LEU LEU A . n A 1 224 LEU 224 221 221 LEU LEU A . n A 1 225 GLU 225 222 222 GLU GLU A . n A 1 226 PHE 226 223 223 PHE PHE A . n A 1 227 VAL 227 224 224 VAL VAL A . n A 1 228 THR 228 225 225 THR THR A . n A 1 229 ALA 229 226 226 ALA ALA A . n A 1 230 ALA 230 227 227 ALA ALA A . n A 1 231 GLY 231 228 228 GLY GLY A . n A 1 232 ILE 232 229 229 ILE ILE A . n A 1 233 THR 233 230 230 THR THR A . n A 1 234 LEU 234 231 ? ? ? A . n A 1 235 GLY 235 232 ? ? ? A . n A 1 236 MET 236 233 ? ? ? A . n A 1 237 ASP 237 234 ? ? ? A . n A 1 238 GLU 238 235 ? ? ? A . n A 1 239 LEU 239 236 ? ? ? A . n A 1 240 TYR 240 237 ? ? ? A . n A 1 241 LYS 241 238 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 239 1 HOH HOH A . B 2 HOH 2 240 2 HOH HOH A . B 2 HOH 3 241 3 HOH HOH A . B 2 HOH 4 242 4 HOH HOH A . B 2 HOH 5 243 5 HOH HOH A . B 2 HOH 6 244 6 HOH HOH A . B 2 HOH 7 245 7 HOH HOH A . B 2 HOH 8 246 8 HOH HOH A . B 2 HOH 9 247 9 HOH HOH A . B 2 HOH 10 248 10 HOH HOH A . B 2 HOH 11 249 11 HOH HOH A . B 2 HOH 12 250 12 HOH HOH A . B 2 HOH 13 251 13 HOH HOH A . B 2 HOH 14 252 14 HOH HOH A . B 2 HOH 15 253 15 HOH HOH A . B 2 HOH 16 254 16 HOH HOH A . B 2 HOH 17 255 17 HOH HOH A . B 2 HOH 18 256 18 HOH HOH A . B 2 HOH 19 257 19 HOH HOH A . B 2 HOH 20 258 20 HOH HOH A . B 2 HOH 21 259 21 HOH HOH A . B 2 HOH 22 260 22 HOH HOH A . B 2 HOH 23 261 23 HOH HOH A . B 2 HOH 24 262 24 HOH HOH A . B 2 HOH 25 263 25 HOH HOH A . B 2 HOH 26 264 26 HOH HOH A . B 2 HOH 27 265 27 HOH HOH A . B 2 HOH 28 266 28 HOH HOH A . B 2 HOH 29 267 29 HOH HOH A . B 2 HOH 30 268 30 HOH HOH A . B 2 HOH 31 269 31 HOH HOH A . B 2 HOH 32 270 32 HOH HOH A . B 2 HOH 33 271 33 HOH HOH A . B 2 HOH 34 272 34 HOH HOH A . B 2 HOH 35 273 35 HOH HOH A . B 2 HOH 36 274 36 HOH HOH A . B 2 HOH 37 275 37 HOH HOH A . B 2 HOH 38 276 38 HOH HOH A . B 2 HOH 39 277 39 HOH HOH A . B 2 HOH 40 278 40 HOH HOH A . B 2 HOH 41 279 41 HOH HOH A . B 2 HOH 42 280 42 HOH HOH A . B 2 HOH 43 281 43 HOH HOH A . B 2 HOH 44 282 44 HOH HOH A . B 2 HOH 45 283 45 HOH HOH A . B 2 HOH 46 284 46 HOH HOH A . B 2 HOH 47 285 47 HOH HOH A . B 2 HOH 48 286 48 HOH HOH A . B 2 HOH 49 287 49 HOH HOH A . B 2 HOH 50 288 50 HOH HOH A . B 2 HOH 51 289 51 HOH HOH A . B 2 HOH 52 290 52 HOH HOH A . B 2 HOH 53 291 53 HOH HOH A . B 2 HOH 54 292 54 HOH HOH A . B 2 HOH 55 293 55 HOH HOH A . B 2 HOH 56 294 56 HOH HOH A . B 2 HOH 57 295 57 HOH HOH A . B 2 HOH 58 296 58 HOH HOH A . B 2 HOH 59 297 59 HOH HOH A . B 2 HOH 60 298 60 HOH HOH A . B 2 HOH 61 299 61 HOH HOH A . B 2 HOH 62 300 62 HOH HOH A . B 2 HOH 63 301 63 HOH HOH A . B 2 HOH 64 302 64 HOH HOH A . B 2 HOH 65 303 65 HOH HOH A . B 2 HOH 66 304 66 HOH HOH A . B 2 HOH 67 305 67 HOH HOH A . B 2 HOH 68 306 68 HOH HOH A . B 2 HOH 69 307 69 HOH HOH A . B 2 HOH 70 308 70 HOH HOH A . B 2 HOH 71 309 71 HOH HOH A . B 2 HOH 72 310 72 HOH HOH A . B 2 HOH 73 311 73 HOH HOH A . B 2 HOH 74 312 74 HOH HOH A . B 2 HOH 75 313 75 HOH HOH A . B 2 HOH 76 314 76 HOH HOH A . B 2 HOH 77 315 77 HOH HOH A . B 2 HOH 78 316 78 HOH HOH A . B 2 HOH 79 317 79 HOH HOH A . B 2 HOH 80 318 80 HOH HOH A . B 2 HOH 81 319 81 HOH HOH A . B 2 HOH 82 320 82 HOH HOH A . B 2 HOH 83 321 83 HOH HOH A . B 2 HOH 84 322 84 HOH HOH A . B 2 HOH 85 323 85 HOH HOH A . B 2 HOH 86 324 86 HOH HOH A . B 2 HOH 87 325 87 HOH HOH A . B 2 HOH 88 326 88 HOH HOH A . B 2 HOH 89 327 89 HOH HOH A . B 2 HOH 90 328 90 HOH HOH A . B 2 HOH 91 329 91 HOH HOH A . B 2 HOH 92 330 92 HOH HOH A . B 2 HOH 93 331 93 HOH HOH A . B 2 HOH 94 332 94 HOH HOH A . B 2 HOH 95 333 95 HOH HOH A . B 2 HOH 96 334 96 HOH HOH A . B 2 HOH 97 335 97 HOH HOH A . B 2 HOH 98 336 98 HOH HOH A . B 2 HOH 99 337 99 HOH HOH A . B 2 HOH 100 338 100 HOH HOH A . B 2 HOH 101 339 101 HOH HOH A . B 2 HOH 102 340 102 HOH HOH A . B 2 HOH 103 341 103 HOH HOH A . B 2 HOH 104 342 104 HOH HOH A . B 2 HOH 105 343 105 HOH HOH A . B 2 HOH 106 344 106 HOH HOH A . B 2 HOH 107 345 107 HOH HOH A . B 2 HOH 108 346 108 HOH HOH A . B 2 HOH 109 347 109 HOH HOH A . B 2 HOH 110 348 110 HOH HOH A . B 2 HOH 111 349 111 HOH HOH A . B 2 HOH 112 350 112 HOH HOH A . B 2 HOH 113 351 113 HOH HOH A . B 2 HOH 114 352 114 HOH HOH A . B 2 HOH 115 353 115 HOH HOH A . B 2 HOH 116 354 116 HOH HOH A . B 2 HOH 117 355 117 HOH HOH A . B 2 HOH 118 356 118 HOH HOH A . B 2 HOH 119 357 119 HOH HOH A . B 2 HOH 120 358 120 HOH HOH A . B 2 HOH 121 359 121 HOH HOH A . B 2 HOH 122 360 122 HOH HOH A . B 2 HOH 123 361 123 HOH HOH A . B 2 HOH 124 362 124 HOH HOH A . B 2 HOH 125 363 125 HOH HOH A . B 2 HOH 126 364 126 HOH HOH A . B 2 HOH 127 365 127 HOH HOH A . B 2 HOH 128 366 128 HOH HOH A . B 2 HOH 129 367 129 HOH HOH A . B 2 HOH 130 368 130 HOH HOH A . B 2 HOH 131 369 131 HOH HOH A . B 2 HOH 132 370 132 HOH HOH A . B 2 HOH 133 371 133 HOH HOH A . B 2 HOH 134 372 134 HOH HOH A . B 2 HOH 135 373 135 HOH HOH A . B 2 HOH 136 374 136 HOH HOH A . B 2 HOH 137 375 137 HOH HOH A . B 2 HOH 138 376 138 HOH HOH A . B 2 HOH 139 377 139 HOH HOH A . B 2 HOH 140 378 140 HOH HOH A . B 2 HOH 141 379 141 HOH HOH A . B 2 HOH 142 380 142 HOH HOH A . B 2 HOH 143 381 143 HOH HOH A . B 2 HOH 144 382 144 HOH HOH A . B 2 HOH 145 383 145 HOH HOH A . B 2 HOH 146 384 146 HOH HOH A . B 2 HOH 147 385 147 HOH HOH A . B 2 HOH 148 386 148 HOH HOH A . B 2 HOH 149 387 149 HOH HOH A . B 2 HOH 150 388 150 HOH HOH A . B 2 HOH 151 389 151 HOH HOH A . B 2 HOH 152 390 152 HOH HOH A . B 2 HOH 153 391 153 HOH HOH A . B 2 HOH 154 392 154 HOH HOH A . B 2 HOH 155 393 155 HOH HOH A . B 2 HOH 156 394 156 HOH HOH A . B 2 HOH 157 395 157 HOH HOH A . B 2 HOH 158 396 158 HOH HOH A . B 2 HOH 159 397 159 HOH HOH A . B 2 HOH 160 398 160 HOH HOH A . B 2 HOH 161 399 161 HOH HOH A . B 2 HOH 162 400 162 HOH HOH A . B 2 HOH 163 401 163 HOH HOH A . B 2 HOH 164 402 164 HOH HOH A . B 2 HOH 165 403 165 HOH HOH A . B 2 HOH 166 404 166 HOH HOH A . B 2 HOH 167 405 167 HOH HOH A . B 2 HOH 168 406 168 HOH HOH A . B 2 HOH 169 407 169 HOH HOH A . B 2 HOH 170 408 170 HOH HOH A . B 2 HOH 171 409 171 HOH HOH A . B 2 HOH 172 410 172 HOH HOH A . B 2 HOH 173 411 173 HOH HOH A . B 2 HOH 174 412 174 HOH HOH A . B 2 HOH 175 413 175 HOH HOH A . B 2 HOH 176 414 176 HOH HOH A . B 2 HOH 177 415 177 HOH HOH A . B 2 HOH 178 416 178 HOH HOH A . B 2 HOH 179 417 179 HOH HOH A . B 2 HOH 180 418 180 HOH HOH A . B 2 HOH 181 419 181 HOH HOH A . B 2 HOH 182 420 182 HOH HOH A . B 2 HOH 183 421 183 HOH HOH A . B 2 HOH 184 422 184 HOH HOH A . B 2 HOH 185 423 185 HOH HOH A . B 2 HOH 186 424 186 HOH HOH A . B 2 HOH 187 425 187 HOH HOH A . B 2 HOH 188 426 188 HOH HOH A . B 2 HOH 189 427 189 HOH HOH A . B 2 HOH 190 428 190 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 1 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 # _cell.entry_id 3DQ1 _cell.length_a 51.126 _cell.length_b 60.560 _cell.length_c 67.209 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DQ1 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DQ1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.23 _exptl_crystal.description ;Crystal structure of the Yellow Fluorescent Protein Citrine frozen at 4000 atmospheres. Structure 24 of 26 in a series of high pressure structures. Crystal was high pressure cryo-cooled at 4000 atmospheres in helium gas. Crystal temperature was maintained below 100 K prior to data collection at ambient pressure and 100 K. High pressure cryo-cooling procedure is described in secondary citation 1 (Kim et al., Acta Cryst. D61:881-890). Structure referred to as citrine4000_2 in primary citation (Barstow et al.). ; _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-04-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F2' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 3DQ1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.69 _reflns.d_resolution_high 1.70 _reflns.number_obs 22453 _reflns.number_all ? _reflns.percent_possible_obs 95.2 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_netI_over_sigmaI 7.100 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.800 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 100.00 _reflns_shell.Rmerge_I_obs 0.274 _reflns_shell.pdbx_Rsym_value 0.274 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 7.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DQ1 _refine.ls_number_reflns_obs 21287 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 95.24 _refine.ls_R_factor_obs 0.22728 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22362 _refine.ls_R_factor_R_free 0.29623 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1160 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.893 _refine.B_iso_mean 21.759 _refine.aniso_B[1][1] -0.03 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] 0.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1HUY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.155 _refine.pdbx_overall_ESU_R_Free 0.161 _refine.overall_SU_ML 0.119 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.565 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1850 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 190 _refine_hist.number_atoms_total 2040 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.024 0.022 ? 1896 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.181 1.966 ? 2559 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.513 5.000 ? 228 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.318 25.109 ? 92 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.162 15.000 ? 324 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.582 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.139 0.200 ? 272 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 1451 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.268 0.200 ? 1031 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 1242 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.144 0.200 ? 161 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.253 0.200 ? 74 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.196 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.718 1.500 ? 1168 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.998 2.000 ? 1841 'X-RAY DIFFRACTION' ? r_scbond_it 3.557 3.000 ? 817 'X-RAY DIFFRACTION' ? r_scangle_it 5.001 4.500 ? 718 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 792 _refine_ls_shell.R_factor_R_work 0.451 _refine_ls_shell.percent_reflns_obs 49.73 _refine_ls_shell.R_factor_R_free 0.563 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DQ1 _struct.title ;Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 2: Structure 24 in a Series of 26 High Pressure Structures ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DQ1 _struct_keywords.text ;Yellow Fluorescent Protein, beta barrel, chromophore, fluorescent protein, high pressure, Luminescence, Photoprotein, LUMINESCENT PROTEIN ; _struct_keywords.pdbx_keywords 'LUMINESCENT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GFP_AEQVI _struct_ref.pdbx_db_accession P42212 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQH DFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGI KVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DQ1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 241 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P42212 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 238 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DQ1 GLY A 1 ? UNP P42212 ? ? 'expression tag' -4 1 1 3DQ1 ASP A 2 ? UNP P42212 ? ? 'expression tag' -3 2 1 3DQ1 ASP A 3 ? UNP P42212 ? ? 'expression tag' -2 3 1 3DQ1 PRO A 4 ? UNP P42212 ? ? 'expression tag' -1 4 1 3DQ1 MET A 5 ? UNP P42212 ? ? 'expression tag' 0 5 1 3DQ1 VAL A 6 ? UNP P42212 ? ? 'expression tag' 1 6 1 3DQ1 CR2 A 70 ? UNP P42212 SER 65 chromophore 66 7 1 3DQ1 CR2 A 70 ? UNP P42212 TYR 66 chromophore 66 8 1 3DQ1 CR2 A 70 ? UNP P42212 GLY 67 chromophore 66 9 1 3DQ1 LEU A 71 ? UNP P42212 VAL 68 'engineered mutation' 68 10 1 3DQ1 MET A 72 ? UNP P42212 GLN 69 'engineered mutation' 69 11 1 3DQ1 ALA A 75 ? UNP P42212 SER 72 'engineered mutation' 72 12 1 3DQ1 TYR A 206 ? UNP P42212 THR 203 'engineered mutation' 203 13 1 3DQ1 LEU A 234 ? UNP P42212 HIS 231 'engineered mutation' 231 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? LEU A 12 ? ASP A -2 LEU A 7 1 ? 10 HELX_P HELX_P2 2 PRO A 61 ? VAL A 66 ? PRO A 56 VAL A 61 5 ? 6 HELX_P HELX_P3 3 LEU A 71 ? ALA A 75 ? LEU A 68 ALA A 72 5 ? 5 HELX_P HELX_P4 4 PRO A 78 ? HIS A 84 ? PRO A 75 HIS A 81 5 ? 7 HELX_P HELX_P5 5 ASP A 85 ? ALA A 90 ? ASP A 82 ALA A 87 1 ? 6 HELX_P HELX_P6 6 LYS A 159 ? ASN A 162 ? LYS A 156 ASN A 159 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 69 C ? ? ? 1_555 A CR2 70 N1 ? ? A PHE 64 A CR2 66 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A CR2 70 C3 ? ? ? 1_555 A LEU 71 N ? ? A CR2 66 A LEU 68 1_555 ? ? ? ? ? ? ? 1.293 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CR2 _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 70 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id CR2 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 66 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id 'GLY, TYR, GLY' _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id CR2 _pdbx_modification_feature.type None _pdbx_modification_feature.category Chromophore/chromophore-like # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MET _struct_mon_prot_cis.label_seq_id 91 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MET _struct_mon_prot_cis.auth_seq_id 88 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 92 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 89 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.66 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 12 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 16 ? VAL A 27 ? VAL A 11 VAL A 22 A 2 HIS A 30 ? ASP A 41 ? HIS A 25 ASP A 36 A 3 LYS A 46 ? CYS A 53 ? LYS A 41 CYS A 48 A 4 HIS A 220 ? ALA A 230 ? HIS A 217 ALA A 227 A 5 HIS A 202 ? SER A 211 ? HIS A 199 SER A 208 A 6 HIS A 151 ? ASP A 158 ? HIS A 148 ASP A 155 A 7 GLY A 163 ? ASN A 173 ? GLY A 160 ASN A 170 A 8 VAL A 179 ? PRO A 190 ? VAL A 176 PRO A 187 A 9 TYR A 95 ? PHE A 103 ? TYR A 92 PHE A 100 A 10 ASN A 108 ? GLU A 118 ? ASN A 105 GLU A 115 A 11 THR A 121 ? ILE A 131 ? THR A 118 ILE A 128 A 12 VAL A 16 ? VAL A 27 ? VAL A 11 VAL A 22 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 23 ? N LEU A 18 O VAL A 34 ? O VAL A 29 A 2 3 N ASP A 41 ? N ASP A 36 O LYS A 46 ? O LYS A 41 A 3 4 N LEU A 49 ? N LEU A 44 O LEU A 223 ? O LEU A 220 A 4 5 O ALA A 230 ? O ALA A 227 N TYR A 203 ? N TYR A 200 A 5 6 O LEU A 204 ? O LEU A 201 N VAL A 153 ? N VAL A 150 A 6 7 N MET A 156 ? N MET A 153 O LYS A 165 ? O LYS A 162 A 7 8 N PHE A 168 ? N PHE A 165 O HIS A 184 ? O HIS A 181 A 8 9 O THR A 189 ? O THR A 186 N VAL A 96 ? N VAL A 93 A 9 10 N TYR A 95 ? N TYR A 92 O VAL A 115 ? O VAL A 112 A 10 11 N LYS A 110 ? N LYS A 107 O LYS A 129 ? O LYS A 126 A 11 12 O ILE A 126 ? O ILE A 123 N GLU A 22 ? N GLU A 17 # _pdbx_entry_details.entry_id 3DQ1 _pdbx_entry_details.sequence_details ;RESIDUE SER 65 HAS BEEN MUTATED TO GLY 65. RESIDUES GLY 65, TYR 66 AND GLY 67 CONSTITUTE THE CHROMOPHORE CR2 66. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 153 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 153 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 153 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.10 _pdbx_validate_rmsd_angle.angle_target_value 113.30 _pdbx_validate_rmsd_angle.angle_deviation 10.80 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 103 ? ? -152.17 -159.33 2 1 ILE A 136 ? ? -91.04 -64.14 3 1 GLU A 172 ? ? -46.45 28.73 4 1 ASP A 173 ? ? -152.22 0.30 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CR2 70 A CR2 66 ? GLY ? 2 A CR2 70 A CR2 66 ? TYR ? 3 A CR2 70 A CR2 66 ? GLY ? # _pdbx_phasing_MR.entry_id 3DQ1 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.960 _pdbx_phasing_MR.d_res_low_rotation 22.500 _pdbx_phasing_MR.d_res_high_translation 1.960 _pdbx_phasing_MR.d_res_low_translation 22.500 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A ASP -3 ? A ASP 2 3 1 Y 1 A LEU 231 ? A LEU 234 4 1 Y 1 A GLY 232 ? A GLY 235 5 1 Y 1 A MET 233 ? A MET 236 6 1 Y 1 A ASP 234 ? A ASP 237 7 1 Y 1 A GLU 235 ? A GLU 238 8 1 Y 1 A LEU 236 ? A LEU 239 9 1 Y 1 A TYR 237 ? A TYR 240 10 1 Y 1 A LYS 238 ? A LYS 241 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CR2 N1 N N N 74 CR2 CA1 C N N 75 CR2 C1 C N N 76 CR2 N2 N N N 77 CR2 N3 N N N 78 CR2 C2 C N N 79 CR2 O2 O N N 80 CR2 CA2 C N N 81 CR2 CA3 C N N 82 CR2 C3 C N N 83 CR2 O3 O N N 84 CR2 CB2 C N N 85 CR2 CG2 C Y N 86 CR2 CD1 C Y N 87 CR2 CD2 C Y N 88 CR2 CE1 C Y N 89 CR2 CE2 C Y N 90 CR2 CZ C Y N 91 CR2 OH O N N 92 CR2 OXT O N N 93 CR2 H H N N 94 CR2 H2 H N N 95 CR2 HA1 H N N 96 CR2 HA12 H N N 97 CR2 HA31 H N N 98 CR2 HA32 H N N 99 CR2 HB2 H N N 100 CR2 HD1 H N N 101 CR2 HD2 H N N 102 CR2 HE1 H N N 103 CR2 HE2 H N N 104 CR2 HOH H N N 105 CR2 HXT H N N 106 CYS N N N N 107 CYS CA C N R 108 CYS C C N N 109 CYS O O N N 110 CYS CB C N N 111 CYS SG S N N 112 CYS OXT O N N 113 CYS H H N N 114 CYS H2 H N N 115 CYS HA H N N 116 CYS HB2 H N N 117 CYS HB3 H N N 118 CYS HG H N N 119 CYS HXT H N N 120 GLN N N N N 121 GLN CA C N S 122 GLN C C N N 123 GLN O O N N 124 GLN CB C N N 125 GLN CG C N N 126 GLN CD C N N 127 GLN OE1 O N N 128 GLN NE2 N N N 129 GLN OXT O N N 130 GLN H H N N 131 GLN H2 H N N 132 GLN HA H N N 133 GLN HB2 H N N 134 GLN HB3 H N N 135 GLN HG2 H N N 136 GLN HG3 H N N 137 GLN HE21 H N N 138 GLN HE22 H N N 139 GLN HXT H N N 140 GLU N N N N 141 GLU CA C N S 142 GLU C C N N 143 GLU O O N N 144 GLU CB C N N 145 GLU CG C N N 146 GLU CD C N N 147 GLU OE1 O N N 148 GLU OE2 O N N 149 GLU OXT O N N 150 GLU H H N N 151 GLU H2 H N N 152 GLU HA H N N 153 GLU HB2 H N N 154 GLU HB3 H N N 155 GLU HG2 H N N 156 GLU HG3 H N N 157 GLU HE2 H N N 158 GLU HXT H N N 159 GLY N N N N 160 GLY CA C N N 161 GLY C C N N 162 GLY O O N N 163 GLY OXT O N N 164 GLY H H N N 165 GLY H2 H N N 166 GLY HA2 H N N 167 GLY HA3 H N N 168 GLY HXT H N N 169 HIS N N N N 170 HIS CA C N S 171 HIS C C N N 172 HIS O O N N 173 HIS CB C N N 174 HIS CG C Y N 175 HIS ND1 N Y N 176 HIS CD2 C Y N 177 HIS CE1 C Y N 178 HIS NE2 N Y N 179 HIS OXT O N N 180 HIS H H N N 181 HIS H2 H N N 182 HIS HA H N N 183 HIS HB2 H N N 184 HIS HB3 H N N 185 HIS HD1 H N N 186 HIS HD2 H N N 187 HIS HE1 H N N 188 HIS HE2 H N N 189 HIS HXT H N N 190 HOH O O N N 191 HOH H1 H N N 192 HOH H2 H N N 193 ILE N N N N 194 ILE CA C N S 195 ILE C C N N 196 ILE O O N N 197 ILE CB C N S 198 ILE CG1 C N N 199 ILE CG2 C N N 200 ILE CD1 C N N 201 ILE OXT O N N 202 ILE H H N N 203 ILE H2 H N N 204 ILE HA H N N 205 ILE HB H N N 206 ILE HG12 H N N 207 ILE HG13 H N N 208 ILE HG21 H N N 209 ILE HG22 H N N 210 ILE HG23 H N N 211 ILE HD11 H N N 212 ILE HD12 H N N 213 ILE HD13 H N N 214 ILE HXT H N N 215 LEU N N N N 216 LEU CA C N S 217 LEU C C N N 218 LEU O O N N 219 LEU CB C N N 220 LEU CG C N N 221 LEU CD1 C N N 222 LEU CD2 C N N 223 LEU OXT O N N 224 LEU H H N N 225 LEU H2 H N N 226 LEU HA H N N 227 LEU HB2 H N N 228 LEU HB3 H N N 229 LEU HG H N N 230 LEU HD11 H N N 231 LEU HD12 H N N 232 LEU HD13 H N N 233 LEU HD21 H N N 234 LEU HD22 H N N 235 LEU HD23 H N N 236 LEU HXT H N N 237 LYS N N N N 238 LYS CA C N S 239 LYS C C N N 240 LYS O O N N 241 LYS CB C N N 242 LYS CG C N N 243 LYS CD C N N 244 LYS CE C N N 245 LYS NZ N N N 246 LYS OXT O N N 247 LYS H H N N 248 LYS H2 H N N 249 LYS HA H N N 250 LYS HB2 H N N 251 LYS HB3 H N N 252 LYS HG2 H N N 253 LYS HG3 H N N 254 LYS HD2 H N N 255 LYS HD3 H N N 256 LYS HE2 H N N 257 LYS HE3 H N N 258 LYS HZ1 H N N 259 LYS HZ2 H N N 260 LYS HZ3 H N N 261 LYS HXT H N N 262 MET N N N N 263 MET CA C N S 264 MET C C N N 265 MET O O N N 266 MET CB C N N 267 MET CG C N N 268 MET SD S N N 269 MET CE C N N 270 MET OXT O N N 271 MET H H N N 272 MET H2 H N N 273 MET HA H N N 274 MET HB2 H N N 275 MET HB3 H N N 276 MET HG2 H N N 277 MET HG3 H N N 278 MET HE1 H N N 279 MET HE2 H N N 280 MET HE3 H N N 281 MET HXT H N N 282 PHE N N N N 283 PHE CA C N S 284 PHE C C N N 285 PHE O O N N 286 PHE CB C N N 287 PHE CG C Y N 288 PHE CD1 C Y N 289 PHE CD2 C Y N 290 PHE CE1 C Y N 291 PHE CE2 C Y N 292 PHE CZ C Y N 293 PHE OXT O N N 294 PHE H H N N 295 PHE H2 H N N 296 PHE HA H N N 297 PHE HB2 H N N 298 PHE HB3 H N N 299 PHE HD1 H N N 300 PHE HD2 H N N 301 PHE HE1 H N N 302 PHE HE2 H N N 303 PHE HZ H N N 304 PHE HXT H N N 305 PRO N N N N 306 PRO CA C N S 307 PRO C C N N 308 PRO O O N N 309 PRO CB C N N 310 PRO CG C N N 311 PRO CD C N N 312 PRO OXT O N N 313 PRO H H N N 314 PRO HA H N N 315 PRO HB2 H N N 316 PRO HB3 H N N 317 PRO HG2 H N N 318 PRO HG3 H N N 319 PRO HD2 H N N 320 PRO HD3 H N N 321 PRO HXT H N N 322 SER N N N N 323 SER CA C N S 324 SER C C N N 325 SER O O N N 326 SER CB C N N 327 SER OG O N N 328 SER OXT O N N 329 SER H H N N 330 SER H2 H N N 331 SER HA H N N 332 SER HB2 H N N 333 SER HB3 H N N 334 SER HG H N N 335 SER HXT H N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 TRP N N N N 354 TRP CA C N S 355 TRP C C N N 356 TRP O O N N 357 TRP CB C N N 358 TRP CG C Y N 359 TRP CD1 C Y N 360 TRP CD2 C Y N 361 TRP NE1 N Y N 362 TRP CE2 C Y N 363 TRP CE3 C Y N 364 TRP CZ2 C Y N 365 TRP CZ3 C Y N 366 TRP CH2 C Y N 367 TRP OXT O N N 368 TRP H H N N 369 TRP H2 H N N 370 TRP HA H N N 371 TRP HB2 H N N 372 TRP HB3 H N N 373 TRP HD1 H N N 374 TRP HE1 H N N 375 TRP HE3 H N N 376 TRP HZ2 H N N 377 TRP HZ3 H N N 378 TRP HH2 H N N 379 TRP HXT H N N 380 TYR N N N N 381 TYR CA C N S 382 TYR C C N N 383 TYR O O N N 384 TYR CB C N N 385 TYR CG C Y N 386 TYR CD1 C Y N 387 TYR CD2 C Y N 388 TYR CE1 C Y N 389 TYR CE2 C Y N 390 TYR CZ C Y N 391 TYR OH O N N 392 TYR OXT O N N 393 TYR H H N N 394 TYR H2 H N N 395 TYR HA H N N 396 TYR HB2 H N N 397 TYR HB3 H N N 398 TYR HD1 H N N 399 TYR HD2 H N N 400 TYR HE1 H N N 401 TYR HE2 H N N 402 TYR HH H N N 403 TYR HXT H N N 404 VAL N N N N 405 VAL CA C N S 406 VAL C C N N 407 VAL O O N N 408 VAL CB C N N 409 VAL CG1 C N N 410 VAL CG2 C N N 411 VAL OXT O N N 412 VAL H H N N 413 VAL H2 H N N 414 VAL HA H N N 415 VAL HB H N N 416 VAL HG11 H N N 417 VAL HG12 H N N 418 VAL HG13 H N N 419 VAL HG21 H N N 420 VAL HG22 H N N 421 VAL HG23 H N N 422 VAL HXT H N N 423 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CR2 O3 C3 doub N N 70 CR2 CA3 C3 sing N N 71 CR2 CA3 N3 sing N N 72 CR2 C3 OXT sing N N 73 CR2 N1 CA1 sing N N 74 CR2 O2 C2 doub N N 75 CR2 N3 C2 sing N N 76 CR2 N3 C1 sing N N 77 CR2 C2 CA2 sing N N 78 CR2 CA1 C1 sing N N 79 CR2 C1 N2 doub N N 80 CR2 CA2 N2 sing N N 81 CR2 CA2 CB2 doub N Z 82 CR2 CB2 CG2 sing N N 83 CR2 CG2 CD2 doub Y N 84 CR2 CG2 CD1 sing Y N 85 CR2 CD2 CE2 sing Y N 86 CR2 CD1 CE1 doub Y N 87 CR2 CE2 CZ doub Y N 88 CR2 CE1 CZ sing Y N 89 CR2 CZ OH sing N N 90 CR2 N1 H sing N N 91 CR2 N1 H2 sing N N 92 CR2 CA1 HA1 sing N N 93 CR2 CA1 HA12 sing N N 94 CR2 CA3 HA31 sing N N 95 CR2 CA3 HA32 sing N N 96 CR2 CB2 HB2 sing N N 97 CR2 CD1 HD1 sing N N 98 CR2 CD2 HD2 sing N N 99 CR2 CE1 HE1 sing N N 100 CR2 CE2 HE2 sing N N 101 CR2 OH HOH sing N N 102 CR2 OXT HXT sing N N 103 CYS N CA sing N N 104 CYS N H sing N N 105 CYS N H2 sing N N 106 CYS CA C sing N N 107 CYS CA CB sing N N 108 CYS CA HA sing N N 109 CYS C O doub N N 110 CYS C OXT sing N N 111 CYS CB SG sing N N 112 CYS CB HB2 sing N N 113 CYS CB HB3 sing N N 114 CYS SG HG sing N N 115 CYS OXT HXT sing N N 116 GLN N CA sing N N 117 GLN N H sing N N 118 GLN N H2 sing N N 119 GLN CA C sing N N 120 GLN CA CB sing N N 121 GLN CA HA sing N N 122 GLN C O doub N N 123 GLN C OXT sing N N 124 GLN CB CG sing N N 125 GLN CB HB2 sing N N 126 GLN CB HB3 sing N N 127 GLN CG CD sing N N 128 GLN CG HG2 sing N N 129 GLN CG HG3 sing N N 130 GLN CD OE1 doub N N 131 GLN CD NE2 sing N N 132 GLN NE2 HE21 sing N N 133 GLN NE2 HE22 sing N N 134 GLN OXT HXT sing N N 135 GLU N CA sing N N 136 GLU N H sing N N 137 GLU N H2 sing N N 138 GLU CA C sing N N 139 GLU CA CB sing N N 140 GLU CA HA sing N N 141 GLU C O doub N N 142 GLU C OXT sing N N 143 GLU CB CG sing N N 144 GLU CB HB2 sing N N 145 GLU CB HB3 sing N N 146 GLU CG CD sing N N 147 GLU CG HG2 sing N N 148 GLU CG HG3 sing N N 149 GLU CD OE1 doub N N 150 GLU CD OE2 sing N N 151 GLU OE2 HE2 sing N N 152 GLU OXT HXT sing N N 153 GLY N CA sing N N 154 GLY N H sing N N 155 GLY N H2 sing N N 156 GLY CA C sing N N 157 GLY CA HA2 sing N N 158 GLY CA HA3 sing N N 159 GLY C O doub N N 160 GLY C OXT sing N N 161 GLY OXT HXT sing N N 162 HIS N CA sing N N 163 HIS N H sing N N 164 HIS N H2 sing N N 165 HIS CA C sing N N 166 HIS CA CB sing N N 167 HIS CA HA sing N N 168 HIS C O doub N N 169 HIS C OXT sing N N 170 HIS CB CG sing N N 171 HIS CB HB2 sing N N 172 HIS CB HB3 sing N N 173 HIS CG ND1 sing Y N 174 HIS CG CD2 doub Y N 175 HIS ND1 CE1 doub Y N 176 HIS ND1 HD1 sing N N 177 HIS CD2 NE2 sing Y N 178 HIS CD2 HD2 sing N N 179 HIS CE1 NE2 sing Y N 180 HIS CE1 HE1 sing N N 181 HIS NE2 HE2 sing N N 182 HIS OXT HXT sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 ILE N CA sing N N 186 ILE N H sing N N 187 ILE N H2 sing N N 188 ILE CA C sing N N 189 ILE CA CB sing N N 190 ILE CA HA sing N N 191 ILE C O doub N N 192 ILE C OXT sing N N 193 ILE CB CG1 sing N N 194 ILE CB CG2 sing N N 195 ILE CB HB sing N N 196 ILE CG1 CD1 sing N N 197 ILE CG1 HG12 sing N N 198 ILE CG1 HG13 sing N N 199 ILE CG2 HG21 sing N N 200 ILE CG2 HG22 sing N N 201 ILE CG2 HG23 sing N N 202 ILE CD1 HD11 sing N N 203 ILE CD1 HD12 sing N N 204 ILE CD1 HD13 sing N N 205 ILE OXT HXT sing N N 206 LEU N CA sing N N 207 LEU N H sing N N 208 LEU N H2 sing N N 209 LEU CA C sing N N 210 LEU CA CB sing N N 211 LEU CA HA sing N N 212 LEU C O doub N N 213 LEU C OXT sing N N 214 LEU CB CG sing N N 215 LEU CB HB2 sing N N 216 LEU CB HB3 sing N N 217 LEU CG CD1 sing N N 218 LEU CG CD2 sing N N 219 LEU CG HG sing N N 220 LEU CD1 HD11 sing N N 221 LEU CD1 HD12 sing N N 222 LEU CD1 HD13 sing N N 223 LEU CD2 HD21 sing N N 224 LEU CD2 HD22 sing N N 225 LEU CD2 HD23 sing N N 226 LEU OXT HXT sing N N 227 LYS N CA sing N N 228 LYS N H sing N N 229 LYS N H2 sing N N 230 LYS CA C sing N N 231 LYS CA CB sing N N 232 LYS CA HA sing N N 233 LYS C O doub N N 234 LYS C OXT sing N N 235 LYS CB CG sing N N 236 LYS CB HB2 sing N N 237 LYS CB HB3 sing N N 238 LYS CG CD sing N N 239 LYS CG HG2 sing N N 240 LYS CG HG3 sing N N 241 LYS CD CE sing N N 242 LYS CD HD2 sing N N 243 LYS CD HD3 sing N N 244 LYS CE NZ sing N N 245 LYS CE HE2 sing N N 246 LYS CE HE3 sing N N 247 LYS NZ HZ1 sing N N 248 LYS NZ HZ2 sing N N 249 LYS NZ HZ3 sing N N 250 LYS OXT HXT sing N N 251 MET N CA sing N N 252 MET N H sing N N 253 MET N H2 sing N N 254 MET CA C sing N N 255 MET CA CB sing N N 256 MET CA HA sing N N 257 MET C O doub N N 258 MET C OXT sing N N 259 MET CB CG sing N N 260 MET CB HB2 sing N N 261 MET CB HB3 sing N N 262 MET CG SD sing N N 263 MET CG HG2 sing N N 264 MET CG HG3 sing N N 265 MET SD CE sing N N 266 MET CE HE1 sing N N 267 MET CE HE2 sing N N 268 MET CE HE3 sing N N 269 MET OXT HXT sing N N 270 PHE N CA sing N N 271 PHE N H sing N N 272 PHE N H2 sing N N 273 PHE CA C sing N N 274 PHE CA CB sing N N 275 PHE CA HA sing N N 276 PHE C O doub N N 277 PHE C OXT sing N N 278 PHE CB CG sing N N 279 PHE CB HB2 sing N N 280 PHE CB HB3 sing N N 281 PHE CG CD1 doub Y N 282 PHE CG CD2 sing Y N 283 PHE CD1 CE1 sing Y N 284 PHE CD1 HD1 sing N N 285 PHE CD2 CE2 doub Y N 286 PHE CD2 HD2 sing N N 287 PHE CE1 CZ doub Y N 288 PHE CE1 HE1 sing N N 289 PHE CE2 CZ sing Y N 290 PHE CE2 HE2 sing N N 291 PHE CZ HZ sing N N 292 PHE OXT HXT sing N N 293 PRO N CA sing N N 294 PRO N CD sing N N 295 PRO N H sing N N 296 PRO CA C sing N N 297 PRO CA CB sing N N 298 PRO CA HA sing N N 299 PRO C O doub N N 300 PRO C OXT sing N N 301 PRO CB CG sing N N 302 PRO CB HB2 sing N N 303 PRO CB HB3 sing N N 304 PRO CG CD sing N N 305 PRO CG HG2 sing N N 306 PRO CG HG3 sing N N 307 PRO CD HD2 sing N N 308 PRO CD HD3 sing N N 309 PRO OXT HXT sing N N 310 SER N CA sing N N 311 SER N H sing N N 312 SER N H2 sing N N 313 SER CA C sing N N 314 SER CA CB sing N N 315 SER CA HA sing N N 316 SER C O doub N N 317 SER C OXT sing N N 318 SER CB OG sing N N 319 SER CB HB2 sing N N 320 SER CB HB3 sing N N 321 SER OG HG sing N N 322 SER OXT HXT sing N N 323 THR N CA sing N N 324 THR N H sing N N 325 THR N H2 sing N N 326 THR CA C sing N N 327 THR CA CB sing N N 328 THR CA HA sing N N 329 THR C O doub N N 330 THR C OXT sing N N 331 THR CB OG1 sing N N 332 THR CB CG2 sing N N 333 THR CB HB sing N N 334 THR OG1 HG1 sing N N 335 THR CG2 HG21 sing N N 336 THR CG2 HG22 sing N N 337 THR CG2 HG23 sing N N 338 THR OXT HXT sing N N 339 TRP N CA sing N N 340 TRP N H sing N N 341 TRP N H2 sing N N 342 TRP CA C sing N N 343 TRP CA CB sing N N 344 TRP CA HA sing N N 345 TRP C O doub N N 346 TRP C OXT sing N N 347 TRP CB CG sing N N 348 TRP CB HB2 sing N N 349 TRP CB HB3 sing N N 350 TRP CG CD1 doub Y N 351 TRP CG CD2 sing Y N 352 TRP CD1 NE1 sing Y N 353 TRP CD1 HD1 sing N N 354 TRP CD2 CE2 doub Y N 355 TRP CD2 CE3 sing Y N 356 TRP NE1 CE2 sing Y N 357 TRP NE1 HE1 sing N N 358 TRP CE2 CZ2 sing Y N 359 TRP CE3 CZ3 doub Y N 360 TRP CE3 HE3 sing N N 361 TRP CZ2 CH2 doub Y N 362 TRP CZ2 HZ2 sing N N 363 TRP CZ3 CH2 sing Y N 364 TRP CZ3 HZ3 sing N N 365 TRP CH2 HH2 sing N N 366 TRP OXT HXT sing N N 367 TYR N CA sing N N 368 TYR N H sing N N 369 TYR N H2 sing N N 370 TYR CA C sing N N 371 TYR CA CB sing N N 372 TYR CA HA sing N N 373 TYR C O doub N N 374 TYR C OXT sing N N 375 TYR CB CG sing N N 376 TYR CB HB2 sing N N 377 TYR CB HB3 sing N N 378 TYR CG CD1 doub Y N 379 TYR CG CD2 sing Y N 380 TYR CD1 CE1 sing Y N 381 TYR CD1 HD1 sing N N 382 TYR CD2 CE2 doub Y N 383 TYR CD2 HD2 sing N N 384 TYR CE1 CZ doub Y N 385 TYR CE1 HE1 sing N N 386 TYR CE2 CZ sing Y N 387 TYR CE2 HE2 sing N N 388 TYR CZ OH sing N N 389 TYR OH HH sing N N 390 TYR OXT HXT sing N N 391 VAL N CA sing N N 392 VAL N H sing N N 393 VAL N H2 sing N N 394 VAL CA C sing N N 395 VAL CA CB sing N N 396 VAL CA HA sing N N 397 VAL C O doub N N 398 VAL C OXT sing N N 399 VAL CB CG1 sing N N 400 VAL CB CG2 sing N N 401 VAL CB HB sing N N 402 VAL CG1 HG11 sing N N 403 VAL CG1 HG12 sing N N 404 VAL CG1 HG13 sing N N 405 VAL CG2 HG21 sing N N 406 VAL CG2 HG22 sing N N 407 VAL CG2 HG23 sing N N 408 VAL OXT HXT sing N N 409 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1HUY _pdbx_initial_refinement_model.details 'PDB entry 1HUY' # _atom_sites.entry_id 3DQ1 _atom_sites.fract_transf_matrix[1][1] 0.019560 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016513 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014879 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_