HEADER LIGASE 09-JUL-08 3DQV TITLE STRUCTURAL INSIGHTS INTO NEDD8 ACTIVATION OF CULLIN-RING TITLE 2 LIGASES: CONFORMATIONAL CONTROL OF CONJUGATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEDD8; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NEDD8 C-TERMINUS COVALENTLY LINKED TO CUL5 COMPND 5 LYS724; COMPND 6 SYNONYM: UBIQUITIN-LIKE PROTEIN NEDD8, NEDDYLIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CULLIN-5; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: CULLIN-5 RESIDUES 401-780; COMPND 13 SYNONYM: CUL-5, VASOPRESSIN-ACTIVATED CALCIUM-MOBILIZING COMPND 14 RECEPTOR, VACM-1; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: RBX1; COMPND 19 CHAIN: R, Y; COMPND 20 FRAGMENT: RBX1 RESIDUES 5-108; COMPND 21 SYNONYM: RBX1, REGULATOR OF CULLINS 1, RING FINGER PROTEIN COMPND 22 75, PROTEIN ZYP; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEDD8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CUL5, VACM1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: RBX1, RNF75, ROC1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN, NEDD8, SCF, CULLIN-RING LIGASE, CULLIN, NUCLEUS, KEYWDS 2 UBL CONJUGATION PATHWAY, HOST-VIRUS INTERACTION, RECEPTOR, KEYWDS 3 UBL CONJUGATION, ACETYLATION, CYTOPLASM, DNA DAMAGE, DNA KEYWDS 4 REPAIR, METAL-BINDING, ZINC, ZINC-FINGER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.M.DUDA,L.A.BORG,D.C.SCOTT,H.W.HUNT,M.HAMMEL,B.A.SCHULMAN REVDAT 2 24-FEB-09 3DQV 1 VERSN REVDAT 1 30-SEP-08 3DQV 0 JRNL AUTH D.M.DUDA,L.A.BORG,D.C.SCOTT,H.W.HUNT,M.HAMMEL, JRNL AUTH 2 B.A.SCHULMAN JRNL TITL STRUCTURAL INSIGHTS INTO NEDD8 ACTIVATION OF JRNL TITL 2 CULLIN-RING LIGASES: CONFORMATIONAL CONTROL OF JRNL TITL 3 CONJUGATION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 134 995 2008 JRNL REFN ISSN 0092-8674 JRNL PMID 18805092 JRNL DOI 10.1016/J.CELL.2008.07.022 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1634466.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1415 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4270 REMARK 3 BIN R VALUE (WORKING SET) : 0.4060 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 23.09000 REMARK 3 B22 (A**2) : -21.75000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.60 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.64 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.87 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 19.64 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DQV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB048375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28564 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WITH ~19% PEG3350, 275MM (NH4)2PO4, REMARK 280 5MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.15750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.32350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.22100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.32350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.15750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.22100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, R REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -61.22100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -64.32350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLY A 98 REMARK 465 GLY C 1399 REMARK 465 SER C 1400 REMARK 465 ASN C 1516 REMARK 465 ASN C 1517 REMARK 465 LYS C 1518 REMARK 465 LEU C 1519 REMARK 465 GLY R 3 REMARK 465 SER R 4 REMARK 465 MSE R 5 REMARK 465 ASP R 6 REMARK 465 VAL R 7 REMARK 465 ASP R 8 REMARK 465 THR R 9 REMARK 465 PRO R 10 REMARK 465 SER R 11 REMARK 465 GLY R 12 REMARK 465 THR R 13 REMARK 465 ASN R 14 REMARK 465 SER R 15 REMARK 465 GLY R 16 REMARK 465 ALA R 17 REMARK 465 GLY R 18 REMARK 465 LYS R 19 REMARK 465 TYR R 106 REMARK 465 GLY R 107 REMARK 465 HIS R 108 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLY B 98 REMARK 465 GLY B 99 REMARK 465 GLY D 1399 REMARK 465 SER D 1400 REMARK 465 LYS D 1518 REMARK 465 LEU D 1519 REMARK 465 GLY Y 3 REMARK 465 SER Y 4 REMARK 465 MSE Y 5 REMARK 465 ASP Y 6 REMARK 465 VAL Y 7 REMARK 465 ASP Y 8 REMARK 465 THR Y 9 REMARK 465 PRO Y 10 REMARK 465 SER Y 11 REMARK 465 GLY Y 12 REMARK 465 THR Y 13 REMARK 465 ASN Y 14 REMARK 465 SER Y 15 REMARK 465 GLY Y 16 REMARK 465 ALA Y 17 REMARK 465 GLY Y 18 REMARK 465 ASP Y 51 REMARK 465 LEU Y 52 REMARK 465 TYR Y 106 REMARK 465 GLY Y 107 REMARK 465 HIS Y 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER R 62 OG REMARK 470 THR R 64 OG1 CG2 REMARK 470 ASN Y 47 CG OD1 ND2 REMARK 470 HIS Y 48 CG ND1 CD2 CE1 NE2 REMARK 470 ASN Y 59 CG OD1 ND2 REMARK 470 GLN Y 60 CG CD OE1 NE2 REMARK 470 SER Y 62 OG REMARK 470 THR Y 64 OG1 CG2 REMARK 470 SER Y 65 OG REMARK 470 GLU Y 66 CG CD OE1 OE2 REMARK 470 GLU Y 67 CG CD OE1 OE2 REMARK 470 ARG Y 91 CG CD NE CZ NH1 NH2 REMARK 470 GLN Y 92 CG CD OE1 NE2 REMARK 470 VAL Y 93 CG1 CG2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA R 63 REMARK 475 THR R 64 REMARK 475 ASN Y 41 REMARK 475 ALA Y 58 REMARK 475 ASN Y 59 REMARK 475 GLN Y 60 REMARK 475 ALA Y 63 REMARK 475 THR Y 64 REMARK 475 SER Y 65 REMARK 475 ALA Y 71 REMARK 475 ALA Y 78 REMARK 475 ARG Y 91 REMARK 475 VAL Y 93 REMARK 475 CYS Y 94 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 154 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP C 1772 O ASN C 1774 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP Y 101 CZ3 TRP Y 101 CH2 -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 153 40.19 -72.12 REMARK 500 TYR A 159 40.94 -90.56 REMARK 500 LYS A 160 43.04 27.35 REMARK 500 SER C1402 112.52 78.81 REMARK 500 LYS C1418 85.38 -69.25 REMARK 500 GLN C1445 -88.66 -13.37 REMARK 500 LEU C1464 4.50 -65.87 REMARK 500 ILE C1466 44.80 -107.29 REMARK 500 ALA C1487 -73.04 -74.15 REMARK 500 ASP C1488 -15.85 -49.11 REMARK 500 VAL C1490 -71.87 -45.57 REMARK 500 LYS C1529 102.89 -166.61 REMARK 500 ALA C1535 -80.77 -66.61 REMARK 500 TRP C1536 -102.73 -49.02 REMARK 500 SER C1537 149.88 -29.70 REMARK 500 ARG C1538 -122.75 -122.64 REMARK 500 SER C1539 117.43 -37.16 REMARK 500 PHE C1584 72.49 -150.34 REMARK 500 ASN C1586 -159.33 -106.00 REMARK 500 ALA C1605 5.63 -69.93 REMARK 500 ASN C1607 -43.43 -29.88 REMARK 500 ARG C1609 54.34 -148.88 REMARK 500 PRO C1610 -52.15 -29.67 REMARK 500 GLU C1624 -15.17 67.86 REMARK 500 GLU C1651 -118.05 -90.26 REMARK 500 PRO C1652 104.70 -47.57 REMARK 500 SER C1673 158.30 158.30 REMARK 500 LEU C1694 125.25 -16.25 REMARK 500 THR C1695 -55.58 -29.05 REMARK 500 LYS C1727 -35.41 -135.50 REMARK 500 HIS C1763 20.89 -76.43 REMARK 500 THR C1775 105.50 62.58 REMARK 500 ARG R 21 155.03 -44.36 REMARK 500 ALA R 43 -6.79 -54.38 REMARK 500 GLU R 55 -78.51 -70.71 REMARK 500 ASN R 59 124.19 -32.68 REMARK 500 GLN R 60 -173.43 -54.99 REMARK 500 SER R 62 -166.86 174.82 REMARK 500 SER R 65 44.15 -76.79 REMARK 500 GLU R 67 151.72 -42.20 REMARK 500 HIS R 80 -162.16 -61.72 REMARK 500 ARG R 86 8.41 -68.64 REMARK 500 LEU R 88 -24.44 -148.57 REMARK 500 LYS R 89 0.29 -69.04 REMARK 500 THR R 90 -113.75 -143.81 REMARK 500 ARG R 91 102.03 -55.24 REMARK 500 GLN R 92 42.71 -91.22 REMARK 500 PRO R 95 78.03 -66.50 REMARK 500 LEU R 96 -36.85 173.47 REMARK 500 ASN R 98 51.98 19.43 REMARK 500 GLU R 100 134.28 -13.65 REMARK 500 ASP B 121 132.90 -28.26 REMARK 500 SER B 146 57.38 19.76 REMARK 500 LYS B 160 32.67 78.41 REMARK 500 ARG B 174 31.03 -68.68 REMARK 500 SER D1402 139.60 -28.17 REMARK 500 ASP D1465 80.23 41.89 REMARK 500 VAL D1483 14.00 -66.57 REMARK 500 LEU D1506 -33.57 -37.95 REMARK 500 PRO D1522 175.99 -50.76 REMARK 500 TRP D1536 -108.89 -97.77 REMARK 500 SER D1537 126.25 -19.26 REMARK 500 ARG D1538 36.88 -99.42 REMARK 500 SER D1539 -160.37 -161.92 REMARK 500 SER D1540 46.68 164.76 REMARK 500 ASN D1586 -117.56 -77.81 REMARK 500 GLU D1587 4.31 -173.88 REMARK 500 ARG D1609 74.64 -155.56 REMARK 500 GLU D1624 -2.79 67.30 REMARK 500 SER D1636 0.45 -69.98 REMARK 500 PRO D1641 -111.78 -16.75 REMARK 500 LEU D1643 135.74 -13.91 REMARK 500 GLU D1651 -84.41 -68.10 REMARK 500 THR D1664 134.24 -37.75 REMARK 500 GLN D1670 12.56 -57.71 REMARK 500 ARG D1683 -164.90 -117.15 REMARK 500 LYS D1685 104.37 179.84 REMARK 500 ARG D1691 90.70 46.46 REMARK 500 LEU D1692 57.88 -91.74 REMARK 500 LYS Y 20 -123.43 -79.78 REMARK 500 ARG Y 21 -7.93 -152.25 REMARK 500 ASP Y 40 67.25 63.10 REMARK 500 CYS Y 45 21.70 -141.33 REMARK 500 ARG Y 46 78.70 6.66 REMARK 500 GLU Y 67 -22.07 -166.75 REMARK 500 CYS Y 68 99.35 -36.41 REMARK 500 VAL Y 74 -145.38 53.37 REMARK 500 CYS Y 75 100.15 -1.51 REMARK 500 ASN Y 76 -35.67 -35.45 REMARK 500 HIS Y 80 -167.08 -58.40 REMARK 500 PHE Y 81 -61.63 -99.42 REMARK 500 HIS Y 82 -5.83 -58.24 REMARK 500 ARG Y 86 23.84 -67.40 REMARK 500 LYS Y 89 -36.50 -148.81 REMARK 500 ARG Y 91 -163.44 -126.27 REMARK 500 GLN Y 92 -11.11 -160.40 REMARK 500 CYS Y 94 141.45 -38.75 REMARK 500 ASP Y 97 -144.84 -103.94 REMARK 500 ASN Y 98 -15.28 -144.38 REMARK 500 ARG Y 99 136.02 -36.99 REMARK 500 PHE Y 103 143.42 -29.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN R4005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS R 42 SG REMARK 620 2 CYS R 45 SG 122.6 REMARK 620 3 CYS R 83 SG 128.2 94.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN R4004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS R 53 SG REMARK 620 2 CYS R 56 SG 109.3 REMARK 620 3 CYS R 68 SG 119.4 122.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN R4006 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS R 75 SG REMARK 620 2 CYS R 94 SG 120.3 REMARK 620 3 ASP R 97 OD1 134.2 76.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN Y4002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Y 42 SG REMARK 620 2 CYS Y 45 SG 149.1 REMARK 620 3 CYS Y 83 SG 111.5 99.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN Y4003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Y 56 SG REMARK 620 2 CYS Y 68 SG 102.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN R 4004 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN R 4005 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN R 4006 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN Y 4001 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN Y 4002 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN Y 4003 DBREF 3DQV A 101 176 UNP Q15843 NEDD8_HUMAN 1 76 DBREF 3DQV C 1401 1780 UNP Q93034 CUL5_HUMAN 401 780 DBREF 3DQV R 5 108 UNP P62877 RBX1_HUMAN 5 108 DBREF 3DQV B 101 176 UNP Q15843 NEDD8_HUMAN 1 76 DBREF 3DQV D 1401 1780 UNP Q93034 CUL5_HUMAN 401 780 DBREF 3DQV Y 5 108 UNP P62877 RBX1_HUMAN 5 108 SEQADV 3DQV GLY A 96 UNP Q15843 INSERTION SEQADV 3DQV SER A 97 UNP Q15843 INSERTION SEQADV 3DQV GLY A 98 UNP Q15843 INSERTION SEQADV 3DQV GLY A 99 UNP Q15843 INSERTION SEQADV 3DQV SER A 100 UNP Q15843 INSERTION SEQADV 3DQV MSE A 162 UNP Q15843 LEU 62 CONFLICT SEQADV 3DQV GLY C 1399 UNP Q93034 INSERTION SEQADV 3DQV SER C 1400 UNP Q93034 INSERTION SEQADV 3DQV GLU C 1407 UNP Q93034 LEU 407 CONFLICT SEQADV 3DQV LYS C 1439 UNP Q93034 LEU 439 CONFLICT SEQADV 3DQV LYS C 1440 UNP Q93034 VAL 440 CONFLICT SEQADV 3DQV GLY R 3 UNP P62877 INSERTION SEQADV 3DQV SER R 4 UNP P62877 INSERTION SEQADV 3DQV GLY B 96 UNP Q15843 INSERTION SEQADV 3DQV SER B 97 UNP Q15843 INSERTION SEQADV 3DQV GLY B 98 UNP Q15843 INSERTION SEQADV 3DQV GLY B 99 UNP Q15843 INSERTION SEQADV 3DQV SER B 100 UNP Q15843 INSERTION SEQADV 3DQV MSE B 162 UNP Q15843 LEU 62 CONFLICT SEQADV 3DQV GLY D 1399 UNP Q93034 INSERTION SEQADV 3DQV SER D 1400 UNP Q93034 INSERTION SEQADV 3DQV GLU D 1407 UNP Q93034 LEU 407 CONFLICT SEQADV 3DQV LYS D 1439 UNP Q93034 LEU 439 CONFLICT SEQADV 3DQV LYS D 1440 UNP Q93034 VAL 440 CONFLICT SEQADV 3DQV GLY Y 3 UNP P62877 INSERTION SEQADV 3DQV SER Y 4 UNP P62877 INSERTION SEQRES 1 A 81 GLY SER GLY GLY SER MSE LEU ILE LYS VAL LYS THR LEU SEQRES 2 A 81 THR GLY LYS GLU ILE GLU ILE ASP ILE GLU PRO THR ASP SEQRES 3 A 81 LYS VAL GLU ARG ILE LYS GLU ARG VAL GLU GLU LYS GLU SEQRES 4 A 81 GLY ILE PRO PRO GLN GLN GLN ARG LEU ILE TYR SER GLY SEQRES 5 A 81 LYS GLN MSE ASN ASP GLU LYS THR ALA ALA ASP TYR LYS SEQRES 6 A 81 ILE MSE GLY GLY SER VAL LEU HIS LEU VAL LEU ALA LEU SEQRES 7 A 81 ARG GLY GLY SEQRES 1 C 382 GLY SER GLU SER LYS CYS PRO GLU GLU LEU ALA ASN TYR SEQRES 2 C 382 CYS ASP MSE LEU LEU ARG LYS THR PRO LEU SER LYS LYS SEQRES 3 C 382 LEU THR SER GLU GLU ILE GLU ALA LYS LEU LYS GLU VAL SEQRES 4 C 382 LEU LYS LYS LEU LYS TYR VAL GLN ASN LYS ASP VAL PHE SEQRES 5 C 382 MSE ARG TYR HIS LYS ALA HIS LEU THR ARG ARG LEU ILE SEQRES 6 C 382 LEU ASP ILE SER ALA ASP SER GLU ILE GLU GLU ASN MSE SEQRES 7 C 382 VAL GLU TRP LEU ARG GLU VAL GLY MSE PRO ALA ASP TYR SEQRES 8 C 382 VAL ASN LYS LEU ALA ARG MSE PHE GLN ASP ILE LYS VAL SEQRES 9 C 382 SER GLU ASP LEU ASN GLN ALA PHE LYS GLU MSE HIS LYS SEQRES 10 C 382 ASN ASN LYS LEU ALA LEU PRO ALA ASP SER VAL ASN ILE SEQRES 11 C 382 LYS ILE LEU ASN ALA GLY ALA TRP SER ARG SER SER GLU SEQRES 12 C 382 LYS VAL PHE VAL SER LEU PRO THR GLU LEU GLU ASP LEU SEQRES 13 C 382 ILE PRO GLU VAL GLU GLU PHE TYR LYS LYS ASN HIS SER SEQRES 14 C 382 GLY ARG LYS LEU HIS TRP HIS HIS LEU MSE SER ASN GLY SEQRES 15 C 382 ILE ILE THR PHE LYS ASN GLU VAL GLY GLN TYR ASP LEU SEQRES 16 C 382 GLU VAL THR THR PHE GLN LEU ALA VAL LEU PHE ALA TRP SEQRES 17 C 382 ASN GLN ARG PRO ARG GLU LYS ILE SER PHE GLU ASN LEU SEQRES 18 C 382 LYS LEU ALA THR GLU LEU PRO ASP ALA GLU LEU ARG ARG SEQRES 19 C 382 THR LEU TRP SER LEU VAL ALA PHE PRO LYS LEU LYS ARG SEQRES 20 C 382 GLN VAL LEU LEU TYR GLU PRO GLN VAL ASN SER PRO LYS SEQRES 21 C 382 ASP PHE THR GLU GLY THR LEU PHE SER VAL ASN GLN GLU SEQRES 22 C 382 PHE SER LEU ILE LYS ASN ALA LYS VAL GLN LYS ARG GLY SEQRES 23 C 382 LYS ILE ASN LEU ILE GLY ARG LEU GLN LEU THR THR GLU SEQRES 24 C 382 ARG MSE ARG GLU GLU GLU ASN GLU GLY ILE VAL GLN LEU SEQRES 25 C 382 ARG ILE LEU ARG THR GLN GLU ALA ILE ILE GLN ILE MSE SEQRES 26 C 382 LYS MSE ARG LYS LYS ILE SER ASN ALA GLN LEU GLN THR SEQRES 27 C 382 GLU LEU VAL GLU ILE LEU LYS ASN MSE PHE LEU PRO GLN SEQRES 28 C 382 LYS LYS MSE ILE LYS GLU GLN ILE GLU TRP LEU ILE GLU SEQRES 29 C 382 HIS LYS TYR ILE ARG ARG ASP GLU SER ASP ILE ASN THR SEQRES 30 C 382 PHE ILE TYR MSE ALA SEQRES 1 R 106 GLY SER MSE ASP VAL ASP THR PRO SER GLY THR ASN SER SEQRES 2 R 106 GLY ALA GLY LYS LYS ARG PHE GLU VAL LYS LYS TRP ASN SEQRES 3 R 106 ALA VAL ALA LEU TRP ALA TRP ASP ILE VAL VAL ASP ASN SEQRES 4 R 106 CYS ALA ILE CYS ARG ASN HIS ILE MSE ASP LEU CYS ILE SEQRES 5 R 106 GLU CYS GLN ALA ASN GLN ALA SER ALA THR SER GLU GLU SEQRES 6 R 106 CYS THR VAL ALA TRP GLY VAL CYS ASN HIS ALA PHE HIS SEQRES 7 R 106 PHE HIS CYS ILE SER ARG TRP LEU LYS THR ARG GLN VAL SEQRES 8 R 106 CYS PRO LEU ASP ASN ARG GLU TRP GLU PHE GLN LYS TYR SEQRES 9 R 106 GLY HIS SEQRES 1 B 81 GLY SER GLY GLY SER MSE LEU ILE LYS VAL LYS THR LEU SEQRES 2 B 81 THR GLY LYS GLU ILE GLU ILE ASP ILE GLU PRO THR ASP SEQRES 3 B 81 LYS VAL GLU ARG ILE LYS GLU ARG VAL GLU GLU LYS GLU SEQRES 4 B 81 GLY ILE PRO PRO GLN GLN GLN ARG LEU ILE TYR SER GLY SEQRES 5 B 81 LYS GLN MSE ASN ASP GLU LYS THR ALA ALA ASP TYR LYS SEQRES 6 B 81 ILE MSE GLY GLY SER VAL LEU HIS LEU VAL LEU ALA LEU SEQRES 7 B 81 ARG GLY GLY SEQRES 1 D 382 GLY SER GLU SER LYS CYS PRO GLU GLU LEU ALA ASN TYR SEQRES 2 D 382 CYS ASP MSE LEU LEU ARG LYS THR PRO LEU SER LYS LYS SEQRES 3 D 382 LEU THR SER GLU GLU ILE GLU ALA LYS LEU LYS GLU VAL SEQRES 4 D 382 LEU LYS LYS LEU LYS TYR VAL GLN ASN LYS ASP VAL PHE SEQRES 5 D 382 MSE ARG TYR HIS LYS ALA HIS LEU THR ARG ARG LEU ILE SEQRES 6 D 382 LEU ASP ILE SER ALA ASP SER GLU ILE GLU GLU ASN MSE SEQRES 7 D 382 VAL GLU TRP LEU ARG GLU VAL GLY MSE PRO ALA ASP TYR SEQRES 8 D 382 VAL ASN LYS LEU ALA ARG MSE PHE GLN ASP ILE LYS VAL SEQRES 9 D 382 SER GLU ASP LEU ASN GLN ALA PHE LYS GLU MSE HIS LYS SEQRES 10 D 382 ASN ASN LYS LEU ALA LEU PRO ALA ASP SER VAL ASN ILE SEQRES 11 D 382 LYS ILE LEU ASN ALA GLY ALA TRP SER ARG SER SER GLU SEQRES 12 D 382 LYS VAL PHE VAL SER LEU PRO THR GLU LEU GLU ASP LEU SEQRES 13 D 382 ILE PRO GLU VAL GLU GLU PHE TYR LYS LYS ASN HIS SER SEQRES 14 D 382 GLY ARG LYS LEU HIS TRP HIS HIS LEU MSE SER ASN GLY SEQRES 15 D 382 ILE ILE THR PHE LYS ASN GLU VAL GLY GLN TYR ASP LEU SEQRES 16 D 382 GLU VAL THR THR PHE GLN LEU ALA VAL LEU PHE ALA TRP SEQRES 17 D 382 ASN GLN ARG PRO ARG GLU LYS ILE SER PHE GLU ASN LEU SEQRES 18 D 382 LYS LEU ALA THR GLU LEU PRO ASP ALA GLU LEU ARG ARG SEQRES 19 D 382 THR LEU TRP SER LEU VAL ALA PHE PRO LYS LEU LYS ARG SEQRES 20 D 382 GLN VAL LEU LEU TYR GLU PRO GLN VAL ASN SER PRO LYS SEQRES 21 D 382 ASP PHE THR GLU GLY THR LEU PHE SER VAL ASN GLN GLU SEQRES 22 D 382 PHE SER LEU ILE LYS ASN ALA LYS VAL GLN LYS ARG GLY SEQRES 23 D 382 LYS ILE ASN LEU ILE GLY ARG LEU GLN LEU THR THR GLU SEQRES 24 D 382 ARG MSE ARG GLU GLU GLU ASN GLU GLY ILE VAL GLN LEU SEQRES 25 D 382 ARG ILE LEU ARG THR GLN GLU ALA ILE ILE GLN ILE MSE SEQRES 26 D 382 LYS MSE ARG LYS LYS ILE SER ASN ALA GLN LEU GLN THR SEQRES 27 D 382 GLU LEU VAL GLU ILE LEU LYS ASN MSE PHE LEU PRO GLN SEQRES 28 D 382 LYS LYS MSE ILE LYS GLU GLN ILE GLU TRP LEU ILE GLU SEQRES 29 D 382 HIS LYS TYR ILE ARG ARG ASP GLU SER ASP ILE ASN THR SEQRES 30 D 382 PHE ILE TYR MSE ALA SEQRES 1 Y 106 GLY SER MSE ASP VAL ASP THR PRO SER GLY THR ASN SER SEQRES 2 Y 106 GLY ALA GLY LYS LYS ARG PHE GLU VAL LYS LYS TRP ASN SEQRES 3 Y 106 ALA VAL ALA LEU TRP ALA TRP ASP ILE VAL VAL ASP ASN SEQRES 4 Y 106 CYS ALA ILE CYS ARG ASN HIS ILE MSE ASP LEU CYS ILE SEQRES 5 Y 106 GLU CYS GLN ALA ASN GLN ALA SER ALA THR SER GLU GLU SEQRES 6 Y 106 CYS THR VAL ALA TRP GLY VAL CYS ASN HIS ALA PHE HIS SEQRES 7 Y 106 PHE HIS CYS ILE SER ARG TRP LEU LYS THR ARG GLN VAL SEQRES 8 Y 106 CYS PRO LEU ASP ASN ARG GLU TRP GLU PHE GLN LYS TYR SEQRES 9 Y 106 GLY HIS MODRES 3DQV MSE A 101 MET SELENOMETHIONINE MODRES 3DQV MSE A 150 MET SELENOMETHIONINE MODRES 3DQV MSE A 162 MET SELENOMETHIONINE MODRES 3DQV MSE C 1414 MET SELENOMETHIONINE MODRES 3DQV MSE C 1451 MET SELENOMETHIONINE MODRES 3DQV MSE C 1476 MET SELENOMETHIONINE MODRES 3DQV MSE C 1485 MET SELENOMETHIONINE MODRES 3DQV MSE C 1496 MET SELENOMETHIONINE MODRES 3DQV MSE C 1513 MET SELENOMETHIONINE MODRES 3DQV MSE C 1577 MET SELENOMETHIONINE MODRES 3DQV MSE C 1699 MET SELENOMETHIONINE MODRES 3DQV MSE C 1723 MET SELENOMETHIONINE MODRES 3DQV MSE C 1725 MET SELENOMETHIONINE MODRES 3DQV MSE C 1745 MET SELENOMETHIONINE MODRES 3DQV MSE C 1752 MET SELENOMETHIONINE MODRES 3DQV MSE C 1779 MET SELENOMETHIONINE MODRES 3DQV MSE R 50 MET SELENOMETHIONINE MODRES 3DQV MSE B 101 MET SELENOMETHIONINE MODRES 3DQV MSE B 150 MET SELENOMETHIONINE MODRES 3DQV MSE B 162 MET SELENOMETHIONINE MODRES 3DQV MSE D 1414 MET SELENOMETHIONINE MODRES 3DQV MSE D 1451 MET SELENOMETHIONINE MODRES 3DQV MSE D 1476 MET SELENOMETHIONINE MODRES 3DQV MSE D 1485 MET SELENOMETHIONINE MODRES 3DQV MSE D 1496 MET SELENOMETHIONINE MODRES 3DQV MSE D 1513 MET SELENOMETHIONINE MODRES 3DQV MSE D 1577 MET SELENOMETHIONINE MODRES 3DQV MSE D 1699 MET SELENOMETHIONINE MODRES 3DQV MSE D 1723 MET SELENOMETHIONINE MODRES 3DQV MSE D 1725 MET SELENOMETHIONINE MODRES 3DQV MSE D 1745 MET SELENOMETHIONINE MODRES 3DQV MSE D 1752 MET SELENOMETHIONINE MODRES 3DQV MSE D 1779 MET SELENOMETHIONINE MODRES 3DQV MSE Y 50 MET SELENOMETHIONINE HET MSE A 101 8 HET MSE A 150 8 HET MSE A 162 8 HET MSE C1414 8 HET MSE C1451 8 HET MSE C1476 8 HET MSE C1485 8 HET MSE C1496 8 HET MSE C1513 8 HET MSE C1577 8 HET MSE C1699 8 HET MSE C1723 8 HET MSE C1725 8 HET MSE C1745 8 HET MSE C1752 8 HET MSE C1779 8 HET MSE R 50 8 HET MSE B 101 8 HET MSE B 150 8 HET MSE B 162 8 HET MSE D1414 8 HET MSE D1451 8 HET MSE D1476 8 HET MSE D1485 8 HET MSE D1496 8 HET MSE D1513 8 HET MSE D1577 8 HET MSE D1699 8 HET MSE D1723 8 HET MSE D1725 8 HET MSE D1745 8 HET MSE D1752 8 HET MSE D1779 8 HET MSE Y 50 8 HET ZN R4004 1 HET ZN R4005 1 HET ZN R4006 1 HET ZN Y4001 1 HET ZN Y4002 1 HET ZN Y4003 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 34(C5 H11 N O2 SE) FORMUL 7 ZN 6(ZN 2+) HELIX 1 1 LYS A 122 GLU A 134 1 13 HELIX 2 2 PRO A 137 GLN A 141 5 5 HELIX 3 3 GLU C 1406 ARG C 1417 1 12 HELIX 4 4 THR C 1419 LYS C 1424 1 6 HELIX 5 5 THR C 1426 LEU C 1441 1 16 HELIX 6 6 LYS C 1442 VAL C 1444 5 3 HELIX 7 7 LYS C 1447 LEU C 1464 1 18 HELIX 8 8 ASP C 1469 VAL C 1483 1 15 HELIX 9 9 PRO C 1486 MSE C 1513 1 28 HELIX 10 10 PRO C 1522 ASP C 1524 5 3 HELIX 11 11 PRO C 1548 LYS C 1564 1 17 HELIX 12 12 THR C 1597 ALA C 1605 1 9 HELIX 13 13 PHE C 1616 GLU C 1624 1 9 HELIX 14 14 PRO C 1626 ALA C 1639 1 14 HELIX 15 15 SER C 1656 PHE C 1660 5 5 HELIX 16 16 LEU C 1694 ARG C 1726 1 33 HELIX 17 17 SER C 1730 LEU C 1742 1 13 HELIX 18 18 GLN C 1749 HIS C 1763 1 15 HELIX 19 19 CYS R 53 ASN R 59 1 7 HELIX 20 20 PHE R 81 ARG R 86 1 6 HELIX 21 21 LYS B 122 GLU B 134 1 13 HELIX 22 22 PRO B 137 GLN B 139 5 3 HELIX 23 23 THR B 155 LYS B 160 5 6 HELIX 24 24 CYS D 1404 ARG D 1417 1 14 HELIX 25 25 THR D 1419 LEU D 1425 1 7 HELIX 26 26 THR D 1426 LYS D 1440 1 15 HELIX 27 27 LEU D 1441 VAL D 1444 5 4 HELIX 28 28 ASN D 1446 LEU D 1464 1 19 HELIX 29 29 ASP D 1469 VAL D 1483 1 15 HELIX 30 30 PRO D 1486 HIS D 1514 1 29 HELIX 31 31 PRO D 1548 ASP D 1553 1 6 HELIX 32 32 ASP D 1553 LYS D 1564 1 12 HELIX 33 33 THR D 1597 ALA D 1605 1 9 HELIX 34 34 PHE D 1616 GLU D 1624 1 9 HELIX 35 35 PRO D 1626 ALA D 1639 1 14 HELIX 36 36 LEU D 1694 GLU D 1702 1 9 HELIX 37 37 GLU D 1703 MSE D 1725 1 23 HELIX 38 38 ASN D 1731 LEU D 1742 1 12 HELIX 39 39 GLN D 1749 HIS D 1763 1 15 HELIX 40 40 ILE Y 54 ASN Y 59 1 6 HELIX 41 41 PHE Y 81 ARG Y 86 1 6 SHEET 1 A 5 GLU A 112 ILE A 117 0 SHEET 2 A 5 MSE A 101 THR A 107 -1 N ILE A 103 O ILE A 115 SHEET 3 A 5 VAL A 166 LEU A 169 1 O LEU A 167 N LYS A 104 SHEET 4 A 5 LEU A 143 TYR A 145 -1 N ILE A 144 O HIS A 168 SHEET 5 A 5 LYS A 148 GLN A 149 -1 O LYS A 148 N TYR A 145 SHEET 1 B 5 VAL C1526 ASN C1527 0 SHEET 2 B 5 VAL R 24 ASN R 28 1 O TRP R 27 N ASN C1527 SHEET 3 B 5 ASN C1579 THR C1583 -1 N ILE C1581 O LYS R 26 SHEET 4 B 5 GLN C1590 THR C1596 -1 O LEU C1593 N ILE C1582 SHEET 5 B 5 ARG C1683 ASN C1687 1 O GLY C1684 N ASP C1592 SHEET 1 C 3 ILE C1530 ASN C1532 0 SHEET 2 C 3 ALA R 31 TRP R 35 1 O TRP R 33 N LEU C1531 SHEET 3 C 3 ARG C1569 TRP C1573 -1 N LYS C1570 O ALA R 34 SHEET 1 D 3 ILE C1614 SER C1615 0 SHEET 2 D 3 LEU C1665 VAL C1668 -1 O PHE C1666 N ILE C1614 SHEET 3 D 3 LEU C1648 TYR C1650 -1 N LEU C1649 O SER C1667 SHEET 1 E 3 LYS C1728 ILE C1729 0 SHEET 2 E 3 PHE C1776 TYR C1778 -1 O PHE C1776 N ILE C1729 SHEET 3 E 3 ILE C1766 ARG C1768 -1 N ARG C1767 O ILE C1777 SHEET 1 F 5 GLU B 112 ILE B 117 0 SHEET 2 F 5 MSE B 101 LYS B 106 -1 N ILE B 103 O ILE B 115 SHEET 3 F 5 VAL B 166 LEU B 171 1 O LEU B 167 N LYS B 104 SHEET 4 F 5 GLN B 141 TYR B 145 -1 N ILE B 144 O HIS B 168 SHEET 5 F 5 LYS B 148 GLN B 149 -1 O LYS B 148 N TYR B 145 SHEET 1 G 3 VAL D1526 ASN D1532 0 SHEET 2 G 3 PHE Y 22 TRP Y 35 1 O ALA Y 31 N LYS D1529 SHEET 3 G 3 ARG D1569 TRP D1573 -1 N HIS D1572 O LEU Y 32 SHEET 1 H 5 VAL D1526 ASN D1532 0 SHEET 2 H 5 PHE Y 22 TRP Y 35 1 O ALA Y 31 N LYS D1529 SHEET 3 H 5 ASN D1579 LYS D1585 -1 N ASN D1579 O ASN Y 28 SHEET 4 H 5 GLN D1590 THR D1596 -1 O VAL D1595 N GLY D1580 SHEET 5 H 5 ILE D1686 ASN D1687 1 O ILE D1686 N GLU D1594 SHEET 1 I 3 ILE D1614 SER D1615 0 SHEET 2 I 3 LEU D1665 VAL D1668 -1 O PHE D1666 N ILE D1614 SHEET 3 I 3 LEU D1648 TYR D1650 -1 N LEU D1649 O SER D1667 SHEET 1 J 3 LYS D1728 SER D1730 0 SHEET 2 J 3 THR D1775 TYR D1778 -1 O PHE D1776 N ILE D1729 SHEET 3 J 3 ILE D1766 ARG D1768 -1 N ARG D1767 O ILE D1777 SHEET 1 K 2 VAL Y 70 ALA Y 71 0 SHEET 2 K 2 PHE Y 79 HIS Y 80 -1 O PHE Y 79 N ALA Y 71 LINK C SER A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N LEU A 102 1555 1555 1.33 LINK C GLN A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N ASN A 151 1555 1555 1.33 LINK C ILE A 161 N MSE A 162 1555 1555 1.33 LINK C MSE A 162 N GLY A 163 1555 1555 1.33 LINK C ASP C1413 N MSE C1414 1555 1555 1.32 LINK C MSE C1414 N LEU C1415 1555 1555 1.33 LINK C PHE C1450 N MSE C1451 1555 1555 1.33 LINK C MSE C1451 N ARG C1452 1555 1555 1.33 LINK C ASN C1475 N MSE C1476 1555 1555 1.33 LINK C MSE C1476 N VAL C1477 1555 1555 1.33 LINK C GLY C1484 N MSE C1485 1555 1555 1.33 LINK C MSE C1485 N PRO C1486 1555 1555 1.34 LINK C ARG C1495 N MSE C1496 1555 1555 1.33 LINK C MSE C1496 N PHE C1497 1555 1555 1.33 LINK C GLU C1512 N MSE C1513 1555 1555 1.33 LINK C MSE C1513 N HIS C1514 1555 1555 1.33 LINK C LEU C1576 N MSE C1577 1555 1555 1.33 LINK C MSE C1577 N SER C1578 1555 1555 1.33 LINK C ARG C1698 N MSE C1699 1555 1555 1.34 LINK C MSE C1699 N ARG C1700 1555 1555 1.33 LINK C ILE C1722 N MSE C1723 1555 1555 1.33 LINK C MSE C1723 N LYS C1724 1555 1555 1.32 LINK C LYS C1724 N MSE C1725 1555 1555 1.33 LINK C MSE C1725 N ARG C1726 1555 1555 1.33 LINK C ASN C1744 N MSE C1745 1555 1555 1.33 LINK C MSE C1745 N PHE C1746 1555 1555 1.33 LINK C LYS C1751 N MSE C1752 1555 1555 1.32 LINK C MSE C1752 N ILE C1753 1555 1555 1.34 LINK C TYR C1778 N MSE C1779 1555 1555 1.32 LINK C MSE C1779 N ALA C1780 1555 1555 1.33 LINK C ILE R 49 N MSE R 50 1555 1555 1.33 LINK C MSE R 50 N ASP R 51 1555 1555 1.33 LINK C SER B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N LEU B 102 1555 1555 1.33 LINK C GLN B 149 N MSE B 150 1555 1555 1.33 LINK C MSE B 150 N ASN B 151 1555 1555 1.33 LINK C ILE B 161 N MSE B 162 1555 1555 1.32 LINK C MSE B 162 N GLY B 163 1555 1555 1.33 LINK C ASP D1413 N MSE D1414 1555 1555 1.32 LINK C MSE D1414 N LEU D1415 1555 1555 1.33 LINK C PHE D1450 N MSE D1451 1555 1555 1.33 LINK C MSE D1451 N ARG D1452 1555 1555 1.33 LINK C ASN D1475 N MSE D1476 1555 1555 1.33 LINK C MSE D1476 N VAL D1477 1555 1555 1.33 LINK C GLY D1484 N MSE D1485 1555 1555 1.33 LINK C MSE D1485 N PRO D1486 1555 1555 1.34 LINK C ARG D1495 N MSE D1496 1555 1555 1.33 LINK C MSE D1496 N PHE D1497 1555 1555 1.33 LINK C GLU D1512 N MSE D1513 1555 1555 1.33 LINK C MSE D1513 N HIS D1514 1555 1555 1.33 LINK C LEU D1576 N MSE D1577 1555 1555 1.33 LINK C MSE D1577 N SER D1578 1555 1555 1.33 LINK C ARG D1698 N MSE D1699 1555 1555 1.33 LINK C MSE D1699 N ARG D1700 1555 1555 1.32 LINK C ILE D1722 N MSE D1723 1555 1555 1.33 LINK C MSE D1723 N LYS D1724 1555 1555 1.32 LINK C LYS D1724 N MSE D1725 1555 1555 1.33 LINK C MSE D1725 N ARG D1726 1555 1555 1.33 LINK C ASN D1744 N MSE D1745 1555 1555 1.33 LINK C MSE D1745 N PHE D1746 1555 1555 1.33 LINK C LYS D1751 N MSE D1752 1555 1555 1.33 LINK C MSE D1752 N ILE D1753 1555 1555 1.33 LINK C TYR D1778 N MSE D1779 1555 1555 1.33 LINK C MSE D1779 N ALA D1780 1555 1555 1.34 LINK C ILE Y 49 N MSE Y 50 1555 1555 1.33 LINK SG CYS R 42 ZN ZN R4005 1555 1555 2.47 LINK SG CYS R 45 ZN ZN R4005 1555 1555 2.44 LINK SG CYS R 53 ZN ZN R4004 1555 1555 2.58 LINK SG CYS R 56 ZN ZN R4004 1555 1555 2.50 LINK SG CYS R 68 ZN ZN R4004 1555 1555 2.47 LINK SG CYS R 75 ZN ZN R4006 1555 1555 2.35 LINK SG CYS R 83 ZN ZN R4005 1555 1555 2.51 LINK SG CYS R 94 ZN ZN R4006 1555 1555 2.44 LINK OD1 ASP R 97 ZN ZN R4006 1555 1555 2.33 LINK SG CYS Y 42 ZN ZN Y4002 1555 1555 2.66 LINK SG CYS Y 45 ZN ZN Y4002 1555 1555 2.55 LINK SG CYS Y 56 ZN ZN Y4003 1555 1555 2.69 LINK SG CYS Y 68 ZN ZN Y4003 1555 1555 2.98 LINK SG CYS Y 83 ZN ZN Y4002 1555 1555 2.66 LINK SG CYS Y 94 ZN ZN Y4001 1555 1555 2.46 LINK C GLY B 176 NZ LYS D1724 1555 1555 1.52 LINK C GLY A 176 NZ LYS C1724 1555 1555 1.54 SITE 1 AC1 4 CYS R 53 CYS R 56 CYS R 68 HIS R 82 SITE 1 AC2 4 CYS R 42 CYS R 45 HIS R 80 CYS R 83 SITE 1 AC3 4 CYS R 75 HIS R 77 CYS R 94 ASP R 97 SITE 1 AC4 3 CYS Y 75 HIS Y 77 ASP Y 97 SITE 1 AC5 4 CYS Y 42 CYS Y 45 HIS Y 80 CYS Y 83 SITE 1 AC6 4 CYS Y 53 CYS Y 56 CYS Y 68 HIS Y 82 CRYST1 88.315 122.442 128.647 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011323 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007773 0.00000