HEADER ELECTRON TRANSPORT 10-JUL-08 3DR0 TITLE STRUCTURE OF REDUCED CYTOCHROME C6 FROM SYNECHOCOCCUS SP. PCC 7002 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C6; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SOLUBLE CYTOCHROME F, CYTOCHROME C553, CYTOCHROME C-553; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP. PCC 7002; SOURCE 3 ORGANISM_COMMON: AGMENELLUM QUADRUPLICATUM; SOURCE 4 ORGANISM_TAXID: 32049; SOURCE 5 GENE: PETJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC19 KEYWDS CYTOCHROME, PHOTOSYNTHESIS, CYANOBACTERIA, ELECTRON TRANSFER, KEYWDS 2 ELECTRON TRANSPORT, HEME, IRON, METAL-BINDING, THYLAKOID, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.BIALEK,S.KRZYWDA,M.JASKOLSKI,A.SZCZEPANIAK REVDAT 4 01-NOV-23 3DR0 1 REMARK REVDAT 3 25-APR-12 3DR0 1 JRNL VERSN REVDAT 2 04-AUG-09 3DR0 1 JRNL REVDAT 1 14-JUL-09 3DR0 0 JRNL AUTH W.BIALEK,S.KRZYWDA,M.JASKOLSKI,A.SZCZEPANIAK JRNL TITL ATOMIC-RESOLUTION STRUCTURE OF REDUCED CYANOBACTERIAL JRNL TITL 2 CYTOCHROME C6 WITH AN UNUSUAL SEQUENCE INSERTION JRNL REF FEBS J. V. 276 4426 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19678839 JRNL DOI 10.1111/J.1742-4658.2009.07150.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.BIALEK,M.NELSON,K.TAMIOLA,T.KALLAS,A.SZCZEPANIAK REMARK 1 TITL DEEPLY BRANCHING C6-LIKE CYTOCHROMES OF CYANOBACTERIA REMARK 1 REF BIOCHEMISTRY V. 47 5515 2008 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 18439023 REMARK 1 DOI 10.1021/BI701973G REMARK 1 REFERENCE 2 REMARK 1 AUTH C.NOMURA,D.A.BRYANT REMARK 1 TITL CYTOCHROME C6 FROM SYNECHOCOCCUS SP. PCC 7002 REMARK 1 REF THE PHOTOTROPHIC PROKARYOTES 269 1999 REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0039 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 61634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.107 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3963 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 523 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : -0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.988 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.984 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2289 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1375 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3135 ; 1.687 ; 2.109 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3370 ; 1.633 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 6.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;40.289 ;26.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 319 ;11.107 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;19.982 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2610 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 402 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1402 ; 1.619 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 582 ; 0.578 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2186 ; 2.269 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 887 ; 3.315 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 949 ; 4.306 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3664 ; 1.418 ; 1.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 523 ;12.667 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3597 ; 4.407 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3078 -18.0786 -7.9964 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0679 REMARK 3 T33: 0.0999 T12: 0.0122 REMARK 3 T13: -0.0164 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.9043 L22: 2.9646 REMARK 3 L33: 3.5448 L12: 0.4475 REMARK 3 L13: -0.0728 L23: 0.5572 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0880 S13: 0.0822 REMARK 3 S21: -0.0978 S22: -0.0124 S23: -0.0695 REMARK 3 S31: -0.1801 S32: 0.0489 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3122 -32.0445 -10.1208 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0576 REMARK 3 T33: 0.0754 T12: -0.0080 REMARK 3 T13: 0.0068 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.2156 L22: 1.2653 REMARK 3 L33: 1.3290 L12: -0.2179 REMARK 3 L13: 0.0798 L23: 0.1018 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.0145 S13: -0.1193 REMARK 3 S21: 0.0239 S22: 0.0190 S23: 0.0237 REMARK 3 S31: 0.0827 S32: -0.0273 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4577 -22.5080 -12.5056 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.0224 REMARK 3 T33: 0.0292 T12: -0.0027 REMARK 3 T13: -0.0130 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 4.8728 L22: 2.9524 REMARK 3 L33: 0.8024 L12: -2.6969 REMARK 3 L13: -0.6644 L23: 0.8287 REMARK 3 S TENSOR REMARK 3 S11: -0.0777 S12: -0.0106 S13: 0.0801 REMARK 3 S21: -0.0044 S22: 0.0324 S23: -0.0360 REMARK 3 S31: -0.0512 S32: 0.0136 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4548 7.0679 -2.0158 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0611 REMARK 3 T33: 0.0925 T12: -0.0062 REMARK 3 T13: -0.0019 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.7036 L22: 2.2036 REMARK 3 L33: 4.9799 L12: -0.7579 REMARK 3 L13: 0.5589 L23: -0.3811 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: -0.0939 S13: 0.1152 REMARK 3 S21: 0.0598 S22: -0.0314 S23: 0.0004 REMARK 3 S31: -0.2278 S32: -0.0397 S33: 0.1067 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1377 -3.4194 1.1614 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.0692 REMARK 3 T33: 0.0519 T12: 0.0084 REMARK 3 T13: 0.0014 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.9815 L22: 1.3109 REMARK 3 L33: 1.0202 L12: 0.0291 REMARK 3 L13: 0.0600 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.0074 S13: 0.0128 REMARK 3 S21: 0.0008 S22: -0.0156 S23: -0.0826 REMARK 3 S31: -0.0118 S32: 0.0854 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 40 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6261 21.4571 -14.0271 REMARK 3 T TENSOR REMARK 3 T11: 0.0595 T22: 0.0688 REMARK 3 T33: 0.0703 T12: -0.0029 REMARK 3 T13: 0.0020 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.5831 L22: 2.0052 REMARK 3 L33: 0.6002 L12: -0.8684 REMARK 3 L13: -0.6106 L23: 0.7647 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.0697 S13: 0.0757 REMARK 3 S21: -0.0958 S22: -0.0535 S23: -0.0302 REMARK 3 S31: -0.0406 S32: -0.0401 S33: -0.0049 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 41 C 72 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4197 16.3696 -9.1192 REMARK 3 T TENSOR REMARK 3 T11: 0.0393 T22: 0.0511 REMARK 3 T33: 0.0569 T12: -0.0071 REMARK 3 T13: -0.0051 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.6036 L22: 2.2777 REMARK 3 L33: 2.5005 L12: 0.0933 REMARK 3 L13: -0.0015 L23: 0.9943 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.0336 S13: -0.0097 REMARK 3 S21: 0.0043 S22: -0.0433 S23: 0.1267 REMARK 3 S31: 0.0288 S32: -0.1554 S33: 0.0419 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 73 C 93 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2732 17.2052 -7.7044 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0540 REMARK 3 T33: 0.0545 T12: 0.0105 REMARK 3 T13: 0.0088 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.0323 L22: 6.6957 REMARK 3 L33: 0.6696 L12: 2.0866 REMARK 3 L13: 0.0541 L23: 0.6187 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: -0.0300 S13: -0.0122 REMARK 3 S21: 0.0220 S22: 0.0329 S23: -0.1093 REMARK 3 S31: 0.0209 S32: 0.0272 S33: 0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8170 REMARK 200 MONOCHROMATOR : SI [111], HORIZONTALLY FOCUSSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 71.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 1CTJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM HEPES, 2.2M AMMONIUM SULFATE, PH REMARK 280 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.85133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 9.42567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 14 CAB HEM A 94 1.80 REMARK 500 SG CYS C 14 CAB HEM C 94 1.82 REMARK 500 SG CYS B 14 CAB HEM B 94 1.84 REMARK 500 SG CYS A 17 CAC HEM A 94 1.85 REMARK 500 SG CYS C 17 CAC HEM C 94 1.87 REMARK 500 SG CYS B 17 CAC HEM B 94 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 62 100.66 -161.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 94 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEM A 94 NA 92.3 REMARK 620 3 HEM A 94 NB 90.3 90.5 REMARK 620 4 HEM A 94 NC 87.9 179.4 90.0 REMARK 620 5 HEM A 94 ND 89.5 89.8 179.6 89.7 REMARK 620 6 MET A 65 SD 170.1 96.5 85.0 83.4 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 94 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEM B 94 NA 91.6 REMARK 620 3 HEM B 94 NB 89.3 91.1 REMARK 620 4 HEM B 94 NC 87.8 178.9 89.8 REMARK 620 5 HEM B 94 ND 90.2 87.8 178.8 91.2 REMARK 620 6 MET B 65 SD 170.4 97.2 86.9 83.4 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 94 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 18 NE2 REMARK 620 2 HEM C 94 NA 92.8 REMARK 620 3 HEM C 94 NB 88.3 88.4 REMARK 620 4 HEM C 94 NC 89.3 177.6 90.5 REMARK 620 5 HEM C 94 ND 90.1 89.8 177.6 91.3 REMARK 620 6 MET C 65 SD 171.3 94.9 87.8 82.9 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 96 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 95 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 94 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 94 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 94 DBREF 3DR0 A 1 93 UNP O30881 CYC6_SYNP2 25 117 DBREF 3DR0 B 1 93 UNP O30881 CYC6_SYNP2 25 117 DBREF 3DR0 C 1 93 UNP O30881 CYC6_SYNP2 25 117 SEQRES 1 A 93 ALA ASP ALA ALA ALA GLY ALA GLN VAL PHE ALA ALA ASN SEQRES 2 A 93 CYS ALA ALA CYS HIS ALA GLY GLY ASN ASN ALA VAL MET SEQRES 3 A 93 PRO THR LYS THR LEU LYS ALA ASP ALA LEU LYS THR TYR SEQRES 4 A 93 LEU ALA GLY TYR LYS ASP GLY SER LYS SER LEU GLU GLU SEQRES 5 A 93 ALA VAL ALA TYR GLN VAL THR ASN GLY GLN GLY ALA MET SEQRES 6 A 93 PRO ALA PHE GLY GLY ARG LEU SER ASP ALA ASP ILE ALA SEQRES 7 A 93 ASN VAL ALA ALA TYR ILE ALA ASP GLN ALA GLU ASN ASN SEQRES 8 A 93 LYS TRP SEQRES 1 B 93 ALA ASP ALA ALA ALA GLY ALA GLN VAL PHE ALA ALA ASN SEQRES 2 B 93 CYS ALA ALA CYS HIS ALA GLY GLY ASN ASN ALA VAL MET SEQRES 3 B 93 PRO THR LYS THR LEU LYS ALA ASP ALA LEU LYS THR TYR SEQRES 4 B 93 LEU ALA GLY TYR LYS ASP GLY SER LYS SER LEU GLU GLU SEQRES 5 B 93 ALA VAL ALA TYR GLN VAL THR ASN GLY GLN GLY ALA MET SEQRES 6 B 93 PRO ALA PHE GLY GLY ARG LEU SER ASP ALA ASP ILE ALA SEQRES 7 B 93 ASN VAL ALA ALA TYR ILE ALA ASP GLN ALA GLU ASN ASN SEQRES 8 B 93 LYS TRP SEQRES 1 C 93 ALA ASP ALA ALA ALA GLY ALA GLN VAL PHE ALA ALA ASN SEQRES 2 C 93 CYS ALA ALA CYS HIS ALA GLY GLY ASN ASN ALA VAL MET SEQRES 3 C 93 PRO THR LYS THR LEU LYS ALA ASP ALA LEU LYS THR TYR SEQRES 4 C 93 LEU ALA GLY TYR LYS ASP GLY SER LYS SER LEU GLU GLU SEQRES 5 C 93 ALA VAL ALA TYR GLN VAL THR ASN GLY GLN GLY ALA MET SEQRES 6 C 93 PRO ALA PHE GLY GLY ARG LEU SER ASP ALA ASP ILE ALA SEQRES 7 C 93 ASN VAL ALA ALA TYR ILE ALA ASP GLN ALA GLU ASN ASN SEQRES 8 C 93 LYS TRP HET HEM A 94 43 HET SO4 B 96 5 HET SO4 B 95 5 HET HEM B 94 43 HET HEM C 94 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 4 HEM 3(C34 H32 FE N4 O4) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *523(H2 O) HELIX 1 1 ASP A 2 CYS A 14 1 13 HELIX 2 2 CYS A 14 ALA A 19 1 6 HELIX 3 3 GLY A 20 ASN A 22 5 3 HELIX 4 4 LYS A 32 LEU A 40 1 9 HELIX 5 5 SER A 49 GLY A 61 1 13 HELIX 6 6 SER A 73 ASN A 90 1 18 HELIX 7 7 ASP B 2 CYS B 14 1 13 HELIX 8 8 CYS B 14 ALA B 19 1 6 HELIX 9 9 GLY B 20 ASN B 22 5 3 HELIX 10 10 LYS B 32 LEU B 40 1 9 HELIX 11 11 SER B 49 GLY B 61 1 13 HELIX 12 12 SER B 73 ASN B 90 1 18 HELIX 13 13 ASP C 2 CYS C 14 1 13 HELIX 14 14 CYS C 14 ALA C 19 1 6 HELIX 15 15 GLY C 20 ASN C 22 5 3 HELIX 16 16 LYS C 32 LEU C 40 1 9 HELIX 17 17 SER C 49 GLY C 61 1 13 HELIX 18 18 SER C 73 ASN C 90 1 18 LINK NE2 HIS A 18 FE HEM A 94 1555 1555 2.05 LINK SD MET A 65 FE HEM A 94 1555 1555 2.33 LINK NE2 HIS B 18 FE HEM B 94 1555 1555 2.07 LINK SD MET B 65 FE HEM B 94 1555 1555 2.33 LINK NE2 HIS C 18 FE HEM C 94 1555 1555 2.05 LINK SD MET C 65 FE HEM C 94 1555 1555 2.31 SITE 1 AC1 4 HOH B 198 HOH B 232 HOH B 233 ARG C 71 SITE 1 AC2 6 PRO B 66 ALA B 67 HOH B 117 HOH B 262 SITE 2 AC2 6 SER C 73 ASP C 74 SITE 1 AC3 20 ASN A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC3 20 ASN A 23 MET A 26 LYS A 29 THR A 30 SITE 3 AC3 20 LEU A 31 TYR A 39 GLN A 57 VAL A 58 SITE 4 AC3 20 GLN A 62 MET A 65 PRO A 66 PHE A 68 SITE 5 AC3 20 ILE A 84 HOH A 103 HOH A 105 HOH A 106 SITE 1 AC4 23 ASN B 13 CYS B 14 CYS B 17 HIS B 18 SITE 2 AC4 23 ASN B 23 VAL B 25 MET B 26 LYS B 29 SITE 3 AC4 23 THR B 30 LEU B 31 LEU B 36 TYR B 39 SITE 4 AC4 23 GLN B 57 VAL B 58 GLN B 62 MET B 65 SITE 5 AC4 23 PHE B 68 ILE B 84 HOH B 104 HOH B 116 SITE 6 AC4 23 HOH B 224 HOH B 279 HOH B 283 SITE 1 AC5 22 ASN C 13 CYS C 14 CYS C 17 HIS C 18 SITE 2 AC5 22 ASN C 23 MET C 26 LYS C 29 THR C 30 SITE 3 AC5 22 LEU C 31 ALA C 35 TYR C 39 GLN C 57 SITE 4 AC5 22 VAL C 58 GLN C 62 MET C 65 PRO C 66 SITE 5 AC5 22 PHE C 68 ILE C 84 HOH C 99 HOH C 102 SITE 6 AC5 22 HOH C 112 HOH C 129 CRYST1 82.879 82.879 28.277 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012066 0.006966 0.000000 0.00000 SCALE2 0.000000 0.013932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.035364 0.00000