HEADER TRANSFERASE 10-JUL-08 3DR8 TITLE STRUCTURE OF YNCA, A PUTATIVE ACETYLTRANSFERASE FROM SALMONELLA TITLE 2 TYPHIMURIUM WITH ITS COFACTOR ACETYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: YNCA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 STRAIN: LT2; SOURCE 4 GENE: YNCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS SALMONELLA ESSENTIAL GENE IDP0086 ACETYLTRANSFERASE COFACTOR ACETYL- KEYWDS 2 COA, TRANSFERASE. FUNDED BY THE NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 3 INFECTIOUS DISEASES OF NIH CONTRACT NUMBER HHSN272200700058C, KEYWDS 4 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 5 DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,T.SKARINA,O.ONOPRIYENKO,A.M.EDWARDS,W.F.ANDERSON, AUTHOR 2 A.SAVCHENKO,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 6 15-NOV-23 3DR8 1 REMARK REVDAT 5 30-AUG-23 3DR8 1 REMARK DBREF LINK REVDAT 4 16-FEB-11 3DR8 1 KEYWDS REVDAT 3 14-JUL-09 3DR8 1 TITLE REVDAT 2 24-FEB-09 3DR8 1 VERSN REVDAT 1 12-AUG-08 3DR8 0 JRNL AUTH A.U.SINGER,T.SKARINA,O.ONOPRIYENKO,A.M.EDWARDS,W.F.ANDERSON, JRNL AUTH 2 A.SAVCHENKO JRNL TITL STRUCTURE OF YNCA, A PUTATIVE ACETYLTRANSFERASE FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM WITH ITS COFACTOR ACETYL-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 24632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1255 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1655 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2733 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.279 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2995 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4064 ; 1.577 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 7.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;36.900 ;22.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;14.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;11.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2299 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1470 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2018 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 336 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 0.861 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2823 ; 1.359 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1345 ; 2.520 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1240 ; 3.531 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MOLECULE A OF 2BL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM ACETATE TRIHYDRATE 5.6 PH REMARK 280 PLUS 5 MM ACETYL COENZYME A, CRYOPROTECTED WITH N-PARATONE OIL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K, PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.62700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.00250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.68700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.00250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.62700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.68700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 SER B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1544 O HOH A 1613 2.03 REMARK 500 O HOH B 1539 O HOH B 1569 2.13 REMARK 500 OE1 GLU A 121 O HOH A 1577 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 29 57.75 -92.78 REMARK 500 ASN A 59 66.45 15.44 REMARK 500 ALA B 170 34.11 -147.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1428 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1429 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1431 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1431 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 1423 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 1423 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DR6 RELATED DB: PDB REMARK 900 STRUCTURE OF YNCA WITHOUT LIGAND DBREF 3DR8 A -2 171 PDB 3DR8 3DR8 -2 171 DBREF 3DR8 B -2 171 PDB 3DR8 3DR8 -2 171 SEQRES 1 A 174 SER ASN ALA MSE THR ILE ARG PHE ALA ASP LYS ALA ASP SEQRES 2 A 174 CYS ALA ALA ILE THR GLU ILE TYR ASN HIS ALA VAL LEU SEQRES 3 A 174 HIS THR ALA ALA ILE TRP ASN ASP ARG THR VAL ASP THR SEQRES 4 A 174 ASP ASN ARG LEU ALA TRP TYR GLU ALA ARG GLN LEU LEU SEQRES 5 A 174 GLY TYR PRO VAL LEU VAL SER GLU GLU ASN GLY VAL VAL SEQRES 6 A 174 THR GLY TYR ALA SER PHE GLY ASP TRP ARG SER PHE ASP SEQRES 7 A 174 GLY PHE ARG TYR THR VAL GLU HIS SER VAL TYR VAL HIS SEQRES 8 A 174 PRO ALA HIS GLN GLY LYS GLY LEU GLY ARG LYS LEU LEU SEQRES 9 A 174 SER ARG LEU ILE ASP GLU ALA ARG ARG CYS GLY LYS HIS SEQRES 10 A 174 VAL MSE VAL ALA GLY ILE GLU SER GLN ASN ALA ALA SER SEQRES 11 A 174 ILE ARG LEU HIS HIS SER LEU GLY PHE THR VAL THR ALA SEQRES 12 A 174 GLN MSE PRO GLN VAL GLY VAL LYS PHE GLY ARG TRP LEU SEQRES 13 A 174 ASP LEU THR PHE MSE GLN LEU GLN LEU ASP GLU HIS ALA SEQRES 14 A 174 ALA PRO ASP ALA CYS SEQRES 1 B 174 SER ASN ALA MSE THR ILE ARG PHE ALA ASP LYS ALA ASP SEQRES 2 B 174 CYS ALA ALA ILE THR GLU ILE TYR ASN HIS ALA VAL LEU SEQRES 3 B 174 HIS THR ALA ALA ILE TRP ASN ASP ARG THR VAL ASP THR SEQRES 4 B 174 ASP ASN ARG LEU ALA TRP TYR GLU ALA ARG GLN LEU LEU SEQRES 5 B 174 GLY TYR PRO VAL LEU VAL SER GLU GLU ASN GLY VAL VAL SEQRES 6 B 174 THR GLY TYR ALA SER PHE GLY ASP TRP ARG SER PHE ASP SEQRES 7 B 174 GLY PHE ARG TYR THR VAL GLU HIS SER VAL TYR VAL HIS SEQRES 8 B 174 PRO ALA HIS GLN GLY LYS GLY LEU GLY ARG LYS LEU LEU SEQRES 9 B 174 SER ARG LEU ILE ASP GLU ALA ARG ARG CYS GLY LYS HIS SEQRES 10 B 174 VAL MSE VAL ALA GLY ILE GLU SER GLN ASN ALA ALA SER SEQRES 11 B 174 ILE ARG LEU HIS HIS SER LEU GLY PHE THR VAL THR ALA SEQRES 12 B 174 GLN MSE PRO GLN VAL GLY VAL LYS PHE GLY ARG TRP LEU SEQRES 13 B 174 ASP LEU THR PHE MSE GLN LEU GLN LEU ASP GLU HIS ALA SEQRES 14 B 174 ALA PRO ASP ALA CYS MODRES 3DR8 MSE A 1 MET SELENOMETHIONINE MODRES 3DR8 MSE A 116 MET SELENOMETHIONINE MODRES 3DR8 MSE A 142 MET SELENOMETHIONINE MODRES 3DR8 MSE A 158 MET SELENOMETHIONINE MODRES 3DR8 MSE B 1 MET SELENOMETHIONINE MODRES 3DR8 MSE B 116 MET SELENOMETHIONINE MODRES 3DR8 MSE B 142 MET SELENOMETHIONINE MODRES 3DR8 MSE B 158 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 116 8 HET MSE A 142 8 HET MSE A 158 8 HET MSE B 1 8 HET MSE B 116 8 HET MSE B 142 8 HET MSE B 158 8 HET ACT A1428 4 HET ACT A1429 4 HET ACT A1430 4 HET CL A1431 1 HET CL A1432 1 HET ACO A1423 51 HET ACT B1428 4 HET CL B1429 1 HET CL B1430 1 HET ACT B1431 4 HET ACO B1423 51 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM ACO ACETYL COENZYME *A FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 ACT 5(C2 H3 O2 1-) FORMUL 6 CL 4(CL 1-) FORMUL 8 ACO 2(C23 H38 N7 O17 P3 S) FORMUL 14 HOH *387(H2 O) HELIX 1 1 ASP A 7 ALA A 9 5 3 HELIX 2 2 ASP A 10 THR A 25 1 16 HELIX 3 3 ASP A 35 GLY A 50 1 16 HELIX 4 4 PHE A 74 ARG A 78 5 5 HELIX 5 5 PRO A 89 GLN A 92 5 4 HELIX 6 6 GLY A 95 CYS A 111 1 17 HELIX 7 7 ASN A 124 LEU A 134 1 11 HELIX 8 8 ASP B 7 ALA B 9 5 3 HELIX 9 9 ASP B 10 THR B 25 1 16 HELIX 10 10 ASP B 35 LEU B 49 1 15 HELIX 11 11 PHE B 74 ARG B 78 5 5 HELIX 12 12 GLY B 95 CYS B 111 1 17 HELIX 13 13 ASN B 124 LEU B 134 1 11 SHEET 1 A 7 THR A 2 PHE A 5 0 SHEET 2 A 7 VAL A 53 GLU A 58 -1 O VAL A 55 N ARG A 4 SHEET 3 A 7 VAL A 61 ASP A 70 -1 O ALA A 66 N LEU A 54 SHEET 4 A 7 THR A 80 VAL A 87 -1 O TYR A 86 N TYR A 65 SHEET 5 A 7 VAL A 115 GLU A 121 1 O VAL A 117 N VAL A 81 SHEET 6 A 7 ARG A 151 GLN A 161 -1 O MSE A 158 N ALA A 118 SHEET 7 A 7 THR A 137 LYS A 148 -1 N MSE A 142 O LEU A 155 SHEET 1 B 7 MSE B 1 PHE B 5 0 SHEET 2 B 7 VAL B 53 GLU B 58 -1 O VAL B 55 N ARG B 4 SHEET 3 B 7 VAL B 61 ASP B 70 -1 O ALA B 66 N LEU B 54 SHEET 4 B 7 THR B 80 VAL B 87 -1 O TYR B 86 N TYR B 65 SHEET 5 B 7 VAL B 115 GLU B 121 1 O VAL B 117 N VAL B 81 SHEET 6 B 7 ARG B 151 GLN B 161 -1 O MSE B 158 N ALA B 118 SHEET 7 B 7 THR B 137 LYS B 148 -1 N MSE B 142 O LEU B 155 LINK C MSE A 1 N THR A 2 1555 1555 1.32 LINK C VAL A 115 N MSE A 116 1555 1555 1.32 LINK C MSE A 116 N VAL A 117 1555 1555 1.32 LINK C GLN A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N PRO A 143 1555 1555 1.33 LINK C PHE A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N GLN A 159 1555 1555 1.31 LINK C ALA B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N THR B 2 1555 1555 1.32 LINK C VAL B 115 N MSE B 116 1555 1555 1.33 LINK C MSE B 116 N VAL B 117 1555 1555 1.33 LINK C GLN B 141 N MSE B 142 1555 1555 1.32 LINK C MSE B 142 N PRO B 143 1555 1555 1.33 LINK C PHE B 157 N MSE B 158 1555 1555 1.32 LINK C MSE B 158 N GLN B 159 1555 1555 1.32 SITE 1 AC1 5 GLY A 119 LEU A 155 ACT A1429 HOH A1436 SITE 2 AC1 5 PHE B 77 SITE 1 AC2 5 TRP A 71 GLU A 82 PHE A 157 ACT A1428 SITE 2 AC2 5 ARG B 72 SITE 1 AC3 7 PHE A 77 HOH A1540 TRP B 29 GLY B 119 SITE 2 AC3 7 LEU B 155 ACT B1428 HOH B1449 SITE 1 AC4 5 ACT A1430 TRP B 71 ARG B 72 GLU B 82 SITE 2 AC4 5 PHE B 157 SITE 1 AC5 1 HIS B 24 SITE 1 AC6 2 HIS A 132 VAL A 138 SITE 1 AC7 1 HIS B 24 SITE 1 AC8 6 HIS A 20 PRO A 89 ASP A 163 GLU A 164 SITE 2 AC8 6 HIS A 165 HOH A1611 SITE 1 AC9 4 LYS A 8 PHE B 149 ARG B 151 HOH B1548 SITE 1 BC1 28 ALA A 27 HIS A 83 SER A 84 VAL A 85 SITE 2 BC1 28 TYR A 86 VAL A 87 GLN A 92 GLY A 93 SITE 3 BC1 28 LYS A 94 GLY A 95 LEU A 96 GLY A 97 SITE 4 BC1 28 ARG A 98 ALA A 118 ASN A 124 ALA A 125 SITE 5 BC1 28 ALA A 126 SER A 127 ARG A 129 SER A 133 SITE 6 BC1 28 HOH A1489 HOH A1513 HOH A1565 HOH A1579 SITE 7 BC1 28 HOH A1622 HOH A1627 GLU B 57 GLY B 60 SITE 1 BC2 28 PHE A 5 ARG A 110 HOH A1439 ALA B 27 SITE 2 BC2 28 HIS B 83 SER B 84 VAL B 85 TYR B 86 SITE 3 BC2 28 VAL B 87 GLN B 92 GLY B 93 LYS B 94 SITE 4 BC2 28 GLY B 95 LEU B 96 GLY B 97 ARG B 98 SITE 5 BC2 28 ALA B 118 ASN B 124 ALA B 126 SER B 127 SITE 6 BC2 28 ARG B 129 HOH B1472 HOH B1481 HOH B1484 SITE 7 BC2 28 HOH B1489 HOH B1535 HOH B1554 HOH B1569 CRYST1 63.254 71.374 74.005 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013513 0.00000