HEADER UNKNOWN FUNCTION 12-JUL-08 3DSG TITLE XC1028 FROM XANTHOMONAS CAMPESTRIS ADOPTS A PILZ DOMAIN- TITLE 2 LIKE STRUCTURE YET WITH TRIVIAL C-DI-GMP BINDING ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV FIMBRIAE ASSEMBLY PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: PILZ DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PILZ DOMAIN, XANTHOMONAS CAMPESTRIS, C-DI-GMP, TYPE IV KEYWDS 2 PILUS, PA2960, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR T.N.LI,K.H.CHIN,J.H.LIU,A.H.J.WANG,S.H.CHOU REVDAT 1 19-MAY-09 3DSG 0 JRNL AUTH T.N.LI,K.H.CHIN,J.H.LIU,A.H.WANG,S.H.CHOU JRNL TITL XC1028 FROM XANTHOMONAS CAMPESTRIS ADOPTS A PILZ JRNL TITL 2 DOMAIN-LIKE STRUCTURE WITHOUT A C-DI-GMP SWITCH. JRNL REF PROTEINS V. 75 282 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19127589 JRNL DOI 10.1002/PROT.22330 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 235091.450 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 22930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3802 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 9.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 901 REMARK 3 BIN R VALUE (WORKING SET) : 0.4210 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.79000 REMARK 3 B22 (A**2) : 11.58000 REMARK 3 B33 (A**2) : -29.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.040 REMARK 3 BOND ANGLES (DEGREES) : 4.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 6.28 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.490 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.670 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.880 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.820 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 68.69 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3DSG COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB048430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920, 0.96398, 0.97888 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.22000 REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : 0.23000 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE PH 6.5, 18% REMARK 280 PEG 2KMME, 2% GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.94800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.48100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.94800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.48100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: C2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 73 REMARK 465 GLY A 74 REMARK 465 ALA A 75 REMARK 465 GLN A 76 REMARK 465 GLY A 77 REMARK 465 GLN B 76 REMARK 465 GLY B 77 REMARK 465 GLY C 74 REMARK 465 ALA C 75 REMARK 465 GLN C 76 REMARK 465 GLY C 77 REMARK 465 ASN C 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 40 O HOH B 648 1.24 REMARK 500 N LYS C 16 O HOH C 455 1.45 REMARK 500 OH TYR B 42 O HOH B 638 1.78 REMARK 500 N LYS A 16 O HOH A 492 1.86 REMARK 500 CG MSE C 26 O HOH C 425 1.96 REMARK 500 CB LYS C 16 O HOH C 455 1.97 REMARK 500 NH2 ARG C 79 O HOH C 628 1.97 REMARK 500 N LYS B 16 O HOH B 482 1.99 REMARK 500 CG MSE A 26 O HOH A 203 1.99 REMARK 500 CG MSE B 26 O HOH B 350 2.03 REMARK 500 CA LYS C 16 O HOH C 455 2.06 REMARK 500 O HOH C 425 O HOH C 450 2.06 REMARK 500 O ALA B 20 O HOH B 403 2.18 REMARK 500 OG1 THR A 53 O HOH A 204 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ2 TRP A 69 NE1 TRP C 69 3555 1.84 REMARK 500 CZ2 TRP B 69 CZ2 TRP B 69 2656 2.08 REMARK 500 CZ2 TRP A 69 CE2 TRP C 69 3555 2.11 REMARK 500 CH2 TRP A 69 NE1 TRP C 69 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 88 CD PRO A 88 N -0.087 REMARK 500 GLU A 94 CD GLU A 94 OE2 -0.069 REMARK 500 SER B 31 CB SER B 31 OG -0.079 REMARK 500 LEU B 50 CA LEU B 50 C -0.181 REMARK 500 PRO C 37 CD PRO C 37 N -0.088 REMARK 500 PRO C 72 CD PRO C 72 N 0.108 REMARK 500 ALA C 73 CA ALA C 73 CB 0.130 REMARK 500 GLY C 82 C GLY C 82 O -0.140 REMARK 500 GLY C 106 C GLY C 106 OXT 0.451 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 19 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 ALA A 24 N - CA - CB ANGL. DEV. = 9.0 DEGREES REMARK 500 SER A 31 CA - C - O ANGL. DEV. = 13.2 DEGREES REMARK 500 SER A 31 O - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 PRO A 39 C - N - CA ANGL. DEV. = -10.3 DEGREES REMARK 500 PRO A 39 C - N - CD ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 PRO A 55 C - N - CA ANGL. DEV. = -12.5 DEGREES REMARK 500 PRO A 55 C - N - CD ANGL. DEV. = 21.0 DEGREES REMARK 500 SER A 58 O - C - N ANGL. DEV. = -22.3 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LEU A 61 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 PRO A 62 CA - N - CD ANGL. DEV. = -10.5 DEGREES REMARK 500 PRO A 62 C - N - CA ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO A 62 C - N - CD ANGL. DEV. = 21.6 DEGREES REMARK 500 VAL A 63 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 79 CD - NE - CZ ANGL. DEV. = 18.0 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLY A 82 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 PHE A 87 O - C - N ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO A 91 C - N - CD ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 103 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 GLY A 106 CA - C - O ANGL. DEV. = 12.9 DEGREES REMARK 500 LYS B 16 CA - C - O ANGL. DEV. = 20.7 DEGREES REMARK 500 LYS B 16 O - C - N ANGL. DEV. = -24.7 DEGREES REMARK 500 ALA B 20 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 TYR B 22 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR B 22 CB - CG - CD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 SER B 23 CB - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 41 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 TYR B 42 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLU B 47 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU B 54 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO B 55 C - N - CA ANGL. DEV. = -10.7 DEGREES REMARK 500 PRO B 55 C - N - CD ANGL. DEV. = 19.0 DEGREES REMARK 500 PRO B 55 O - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 GLU B 59 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 PRO B 62 CA - N - CD ANGL. DEV. = -8.9 DEGREES REMARK 500 PRO B 62 C - N - CD ANGL. DEV. = 17.5 DEGREES REMARK 500 GLY B 84 C - N - CA ANGL. DEV. = 16.5 DEGREES REMARK 500 PHE B 87 CB - CG - CD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 PHE B 87 CA - C - O ANGL. DEV. = 16.2 DEGREES REMARK 500 PRO B 88 C - N - CA ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO B 88 C - N - CD ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP B 89 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU B 92 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 82 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 -0.25 77.79 REMARK 500 THR A 38 138.85 -179.06 REMARK 500 TRP A 69 136.48 -173.33 REMARK 500 ARG A 79 112.40 58.47 REMARK 500 ALA B 73 115.60 83.24 REMARK 500 ILE C 34 137.01 179.01 REMARK 500 THR C 38 133.39 -174.08 REMARK 500 ASP C 56 44.06 35.03 REMARK 500 TRP C 69 133.76 -172.39 REMARK 500 PRO C 72 4.33 -56.46 REMARK 500 ALA C 105 102.27 -31.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 49 0.10 SIDE_CHAIN REMARK 500 ARG B 79 0.15 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 38 10.77 REMARK 500 SER A 58 -23.91 REMARK 500 GLY A 84 10.48 REMARK 500 GLU A 92 -18.05 REMARK 500 ALA A 105 11.83 REMARK 500 ASP B 46 11.30 REMARK 500 ALA B 64 10.35 REMARK 500 GLY B 93 -16.03 REMARK 500 GLU B 101 -10.88 REMARK 500 ALA B 105 -12.76 REMARK 500 ILE C 10 -11.21 REMARK 500 PRO C 39 -11.78 REMARK 500 VAL C 48 13.71 REMARK 500 ALA C 64 11.40 REMARK 500 GLY C 93 -14.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 13 22.0 L L OUTSIDE RANGE REMARK 500 LYS A 16 22.8 L L OUTSIDE RANGE REMARK 500 ALA A 20 21.0 L L OUTSIDE RANGE REMARK 500 SER A 23 18.9 L L OUTSIDE RANGE REMARK 500 ALA A 24 21.5 L L OUTSIDE RANGE REMARK 500 TYR A 25 24.1 L L OUTSIDE RANGE REMARK 500 ASP A 56 19.9 L L OUTSIDE RANGE REMARK 500 LEU A 61 22.0 L L OUTSIDE RANGE REMARK 500 VAL A 68 22.2 L L OUTSIDE RANGE REMARK 500 ARG A 79 22.8 L L OUTSIDE RANGE REMARK 500 GLU A 94 24.2 L L OUTSIDE RANGE REMARK 500 VAL A 96 23.3 L L OUTSIDE RANGE REMARK 500 ASN A 98 21.5 L L OUTSIDE RANGE REMARK 500 THR A 102 24.3 L L OUTSIDE RANGE REMARK 500 ALA B 20 20.8 L L OUTSIDE RANGE REMARK 500 LEU B 21 22.9 L L OUTSIDE RANGE REMARK 500 SER B 23 21.7 L L OUTSIDE RANGE REMARK 500 ALA B 24 21.7 L L OUTSIDE RANGE REMARK 500 TYR B 25 21.6 L L OUTSIDE RANGE REMARK 500 THR B 53 24.0 L L OUTSIDE RANGE REMARK 500 ASP B 56 24.2 L L OUTSIDE RANGE REMARK 500 ALA B 75 24.1 L L OUTSIDE RANGE REMARK 500 PHE B 87 23.2 L L OUTSIDE RANGE REMARK 500 GLU B 92 21.2 L L OUTSIDE RANGE REMARK 500 GLN C 8 24.7 L L OUTSIDE RANGE REMARK 500 ALA C 24 24.6 L L OUTSIDE RANGE REMARK 500 LEU C 54 22.1 L L OUTSIDE RANGE REMARK 500 ASP C 56 21.6 L L OUTSIDE RANGE REMARK 500 VAL C 63 24.4 L L OUTSIDE RANGE REMARK 500 LYS C 99 24.9 L L OUTSIDE RANGE REMARK 500 THR C 102 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 252 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH B 287 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH C 502 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH A 612 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A 613 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 647 DISTANCE = 5.27 ANGSTROMS DBREF 3DSG A 8 106 UNP Q8PBU4 Q8PBU4_XANCP 8 106 DBREF 3DSG B 8 106 UNP Q8PBU4 Q8PBU4_XANCP 8 106 DBREF 3DSG C 8 106 UNP Q8PBU4 Q8PBU4_XANCP 8 106 SEQRES 1 A 99 GLN GLY ILE LEU SER LEU ALA LEU LYS ASP LYS ALA ALA SEQRES 2 A 99 LEU TYR SER ALA TYR MSE PRO PHE VAL LYS SER GLY GLY SEQRES 3 A 99 ILE PHE VAL PRO THR PRO LYS ARG TYR MSE LEU GLY ASP SEQRES 4 A 99 GLU VAL PHE LEU LEU LEU THR LEU PRO ASP SER SER GLU SEQRES 5 A 99 ARG LEU PRO VAL ALA GLY LYS VAL VAL TRP THR THR PRO SEQRES 6 A 99 ALA GLY ALA GLN GLY ASN ARG ALA ALA GLY ILE GLY VAL SEQRES 7 A 99 GLN PHE PRO ASP GLY PRO GLU GLY GLU ALA VAL ARG ASN SEQRES 8 A 99 LYS ILE GLU THR LEU LEU ALA GLY SEQRES 1 B 99 GLN GLY ILE LEU SER LEU ALA LEU LYS ASP LYS ALA ALA SEQRES 2 B 99 LEU TYR SER ALA TYR MSE PRO PHE VAL LYS SER GLY GLY SEQRES 3 B 99 ILE PHE VAL PRO THR PRO LYS ARG TYR MSE LEU GLY ASP SEQRES 4 B 99 GLU VAL PHE LEU LEU LEU THR LEU PRO ASP SER SER GLU SEQRES 5 B 99 ARG LEU PRO VAL ALA GLY LYS VAL VAL TRP THR THR PRO SEQRES 6 B 99 ALA GLY ALA GLN GLY ASN ARG ALA ALA GLY ILE GLY VAL SEQRES 7 B 99 GLN PHE PRO ASP GLY PRO GLU GLY GLU ALA VAL ARG ASN SEQRES 8 B 99 LYS ILE GLU THR LEU LEU ALA GLY SEQRES 1 C 99 GLN GLY ILE LEU SER LEU ALA LEU LYS ASP LYS ALA ALA SEQRES 2 C 99 LEU TYR SER ALA TYR MSE PRO PHE VAL LYS SER GLY GLY SEQRES 3 C 99 ILE PHE VAL PRO THR PRO LYS ARG TYR MSE LEU GLY ASP SEQRES 4 C 99 GLU VAL PHE LEU LEU LEU THR LEU PRO ASP SER SER GLU SEQRES 5 C 99 ARG LEU PRO VAL ALA GLY LYS VAL VAL TRP THR THR PRO SEQRES 6 C 99 ALA GLY ALA GLN GLY ASN ARG ALA ALA GLY ILE GLY VAL SEQRES 7 C 99 GLN PHE PRO ASP GLY PRO GLU GLY GLU ALA VAL ARG ASN SEQRES 8 C 99 LYS ILE GLU THR LEU LEU ALA GLY MODRES 3DSG MSE A 26 MET SELENOMETHIONINE MODRES 3DSG MSE A 43 MET SELENOMETHIONINE MODRES 3DSG MSE B 26 MET SELENOMETHIONINE MODRES 3DSG MSE B 43 MET SELENOMETHIONINE MODRES 3DSG MSE C 26 MET SELENOMETHIONINE MODRES 3DSG MSE C 43 MET SELENOMETHIONINE HET MSE A 26 8 HET MSE A 43 8 HET MSE B 26 8 HET MSE B 43 8 HET MSE C 26 8 HET MSE C 43 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 HOH *126(H2 O) HELIX 1 1 ASP A 17 TYR A 25 1 9 HELIX 2 2 GLY A 90 ALA A 105 1 16 HELIX 3 3 ASP B 17 TYR B 25 1 9 HELIX 4 4 GLY B 90 GLY B 106 1 17 HELIX 5 5 ASP C 17 ALA C 24 1 8 HELIX 6 6 GLY C 90 ALA C 105 1 16 SHEET 1 A 5 LEU A 11 ALA A 14 0 SHEET 2 A 5 GLU A 47 THR A 53 1 O THR A 53 N LEU A 13 SHEET 3 A 5 LEU A 61 THR A 71 -1 O VAL A 63 N LEU A 50 SHEET 4 A 5 GLY A 82 GLN A 86 -1 O GLN A 86 N LYS A 66 SHEET 5 A 5 GLY A 33 PRO A 37 -1 N VAL A 36 O ILE A 83 SHEET 1 B 5 ILE B 10 ALA B 14 0 SHEET 2 B 5 GLU B 47 THR B 53 1 O LEU B 51 N LEU B 11 SHEET 3 B 5 LEU B 61 THR B 71 -1 O LEU B 61 N LEU B 52 SHEET 4 B 5 GLY B 82 GLN B 86 -1 O GLN B 86 N LYS B 66 SHEET 5 B 5 GLY B 33 PRO B 37 -1 N VAL B 36 O ILE B 83 SHEET 1 C 6 LEU C 11 ALA C 14 0 SHEET 2 C 6 GLU C 47 THR C 53 1 O THR C 53 N LEU C 13 SHEET 3 C 6 LEU C 61 THR C 71 -1 O VAL C 63 N LEU C 50 SHEET 4 C 6 GLY C 82 GLN C 86 -1 O GLY C 84 N VAL C 68 SHEET 5 C 6 GLY C 33 PRO C 37 -1 N VAL C 36 O ILE C 83 SHEET 6 C 6 TYR C 25 MSE C 26 -1 N MSE C 26 O GLY C 33 LINK C TYR A 25 N MSE A 26 1555 1555 1.31 LINK C MSE A 26 N PRO A 27 1555 1555 1.30 LINK C TYR A 42 N MSE A 43 1555 1555 1.30 LINK C MSE A 43 N LEU A 44 1555 1555 1.30 LINK C TYR B 25 N MSE B 26 1555 1555 1.32 LINK C MSE B 26 N PRO B 27 1555 1555 1.32 LINK C TYR B 42 N MSE B 43 1555 1555 1.25 LINK C MSE B 43 N LEU B 44 1555 1555 1.31 LINK C TYR C 25 N MSE C 26 1555 1555 1.31 LINK C MSE C 26 N PRO C 27 1555 1555 1.31 LINK C TYR C 42 N MSE C 43 1555 1555 1.31 LINK C MSE C 43 N LEU C 44 1555 1555 1.30 CRYST1 87.896 50.962 92.745 90.00 90.21 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011377 0.000000 0.000042 0.00000 SCALE2 0.000000 0.019622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010782 0.00000