data_3DSZ # _entry.id 3DSZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DSZ RCSB RCSB048449 WWPDB D_1000048449 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3DTQ 'Engineered human lipocalin 2 with specificity for Y-DTPA, apo-form' unspecified PDB 1L6M 'Native human lipocalin 2' unspecified # _pdbx_database_status.entry_id 3DSZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-07-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eichinger, A.' 1 'Skerra, A.' 2 # _citation.id primary _citation.title 'High-affinity recognition of lanthanide(III) chelate complexes by a reprogrammed human lipocalin 2' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 131 _citation.page_first 3565 _citation.page_last 3576 _citation.year 2009 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19227970 _citation.pdbx_database_id_DOI 10.1021/ja806857r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, H.J.' 1 primary 'Eichinger, A.' 2 primary 'Skerra, A.' 3 # _cell.entry_id 3DSZ _cell.length_a 82.350 _cell.length_b 82.350 _cell.length_c 115.128 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DSZ _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'engineered human lipocalin 2' 21344.191 2 ? ? ? ? 2 non-polymer syn ;N-{(1S,2S)-2-[bis(carboxymethyl)amino]cyclohexyl}-N-{(2R)-2-[bis(carboxymethyl)amino]-3-[4-({[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]carbamothioyl}amino)phenyl]propyl}glycine ; 715.769 2 ? ? ? ? 3 non-polymer syn 'YTTRIUM (III) ION' 88.906 2 ? ? ? ? 4 water nat water 18.015 328 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'neutrophil gelatinase-associated lipocalin, NGAL, siderocalin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QDSTSDLIPAPPLSKVPLQQNFQDNQFHGKWYQVGRAGNAALREDKDPQKMTAQIYELKEDKSYNVTAVRFRKKKCDYLT MTFVPGSQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFSITLLGRTKELASELKENFIRFSKSLG LPENHIVFPVPIDQCIDGSAHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;QDSTSDLIPAPPLSKVPLQQNFQDNQFHGKWYQVGRAGNAALREDKDPQKMTAQIYELKEDKSYNVTAVRFRKKKCDYLT MTFVPGSQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFSITLLGRTKELASELKENFIRFSKSLG LPENHIVFPVPIDQCIDGSAHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ASP n 1 3 SER n 1 4 THR n 1 5 SER n 1 6 ASP n 1 7 LEU n 1 8 ILE n 1 9 PRO n 1 10 ALA n 1 11 PRO n 1 12 PRO n 1 13 LEU n 1 14 SER n 1 15 LYS n 1 16 VAL n 1 17 PRO n 1 18 LEU n 1 19 GLN n 1 20 GLN n 1 21 ASN n 1 22 PHE n 1 23 GLN n 1 24 ASP n 1 25 ASN n 1 26 GLN n 1 27 PHE n 1 28 HIS n 1 29 GLY n 1 30 LYS n 1 31 TRP n 1 32 TYR n 1 33 GLN n 1 34 VAL n 1 35 GLY n 1 36 ARG n 1 37 ALA n 1 38 GLY n 1 39 ASN n 1 40 ALA n 1 41 ALA n 1 42 LEU n 1 43 ARG n 1 44 GLU n 1 45 ASP n 1 46 LYS n 1 47 ASP n 1 48 PRO n 1 49 GLN n 1 50 LYS n 1 51 MET n 1 52 THR n 1 53 ALA n 1 54 GLN n 1 55 ILE n 1 56 TYR n 1 57 GLU n 1 58 LEU n 1 59 LYS n 1 60 GLU n 1 61 ASP n 1 62 LYS n 1 63 SER n 1 64 TYR n 1 65 ASN n 1 66 VAL n 1 67 THR n 1 68 ALA n 1 69 VAL n 1 70 ARG n 1 71 PHE n 1 72 ARG n 1 73 LYS n 1 74 LYS n 1 75 LYS n 1 76 CYS n 1 77 ASP n 1 78 TYR n 1 79 LEU n 1 80 THR n 1 81 MET n 1 82 THR n 1 83 PHE n 1 84 VAL n 1 85 PRO n 1 86 GLY n 1 87 SER n 1 88 GLN n 1 89 PRO n 1 90 GLY n 1 91 GLU n 1 92 PHE n 1 93 THR n 1 94 LEU n 1 95 GLY n 1 96 ASN n 1 97 ILE n 1 98 LYS n 1 99 SER n 1 100 TYR n 1 101 PRO n 1 102 GLY n 1 103 LEU n 1 104 THR n 1 105 SER n 1 106 TYR n 1 107 LEU n 1 108 VAL n 1 109 ARG n 1 110 VAL n 1 111 VAL n 1 112 SER n 1 113 THR n 1 114 ASN n 1 115 TYR n 1 116 ASN n 1 117 GLN n 1 118 HIS n 1 119 ALA n 1 120 MET n 1 121 VAL n 1 122 PHE n 1 123 PHE n 1 124 LYS n 1 125 LYS n 1 126 VAL n 1 127 SER n 1 128 GLN n 1 129 ASN n 1 130 ARG n 1 131 GLU n 1 132 TYR n 1 133 PHE n 1 134 SER n 1 135 ILE n 1 136 THR n 1 137 LEU n 1 138 LEU n 1 139 GLY n 1 140 ARG n 1 141 THR n 1 142 LYS n 1 143 GLU n 1 144 LEU n 1 145 ALA n 1 146 SER n 1 147 GLU n 1 148 LEU n 1 149 LYS n 1 150 GLU n 1 151 ASN n 1 152 PHE n 1 153 ILE n 1 154 ARG n 1 155 PHE n 1 156 SER n 1 157 LYS n 1 158 SER n 1 159 LEU n 1 160 GLY n 1 161 LEU n 1 162 PRO n 1 163 GLU n 1 164 ASN n 1 165 HIS n 1 166 ILE n 1 167 VAL n 1 168 PHE n 1 169 PRO n 1 170 VAL n 1 171 PRO n 1 172 ILE n 1 173 ASP n 1 174 GLN n 1 175 CYS n 1 176 ILE n 1 177 ASP n 1 178 GLY n 1 179 SER n 1 180 ALA n 1 181 HIS n 1 182 HIS n 1 183 HIS n 1 184 HIS n 1 185 HIS n 1 186 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LCN2, variant Tb7.N9' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNGAL15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3DSZ _struct_ref.pdbx_db_accession 3DSZ _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QDSTSDLIPAPPLSKVPLQQNFQDNQFHGKWYQVGRAGNAALREDKDPQKMTAQIYELKEDKSYNVTAVRFRKKKCDYLT MTFVPGSQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFSITLLGRTKELASELKENFIRFSKSLG LPENHIVFPVPIDQCIDGSAHHHHHH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DSZ A 1 ? 186 ? 3DSZ 1 ? 186 ? 1 186 2 1 3DSZ B 1 ? 186 ? 3DSZ 1 ? 186 ? 1 186 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LIZ non-polymer . ;N-{(1S,2S)-2-[bis(carboxymethyl)amino]cyclohexyl}-N-{(2R)-2-[bis(carboxymethyl)amino]-3-[4-({[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]carbamothioyl}amino)phenyl]propyl}glycine ; ? 'C30 H45 N5 O13 S' 715.769 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YT3 non-polymer . 'YTTRIUM (III) ION' ? 'Y 3' 88.906 # _exptl.crystals_number 1 _exptl.entry_id 3DSZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 46.20 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '22% polyethylene glycol 3350, 0.1M Bistris/HCl, pH5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2007-03-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CRYSTAL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95373 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_wavelength_list 0.95373 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 # _reflns.entry_id 3DSZ _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 66.979 _reflns.number_obs 26827 _reflns.pdbx_Rmerge_I_obs 0.109 _reflns.pdbx_netI_over_sigmaI 4.100 _reflns.pdbx_redundancy 9.700 _reflns.percent_possible_obs 98.200 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 97.4 _reflns_shell.Rmerge_I_obs 0.372 _reflns_shell.meanI_over_sigI_obs 6.1 _reflns_shell.pdbx_Rsym_value 0.372 _reflns_shell.pdbx_redundancy 9.8 _reflns_shell.number_unique_all 3813 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DSZ _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 40.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.700 _refine.ls_number_reflns_obs 26807 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.230 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 1347 _refine.B_iso_mean 27.759 _refine.solvent_model_param_bsol 56.905 _refine.aniso_B[1][1] 2.184 _refine.aniso_B[2][2] 2.184 _refine.aniso_B[3][3] -4.367 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.overall_FOM_work_R_set 0.864 _refine.B_iso_max 81.50 _refine.B_iso_min 11.34 _refine.occupancy_max 1.00 _refine.occupancy_min 0.01 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 27437 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2788 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 100 _refine_hist.number_atoms_solvent 328 _refine_hist.number_atoms_total 3216 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 40.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 1.402 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.172 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.187 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.331 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 water.param ? 'X-RAY DIFFRACTION' 3 DTPA-Tris-noY.param ? 'X-RAY DIFFRACTION' 4 ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3DSZ _struct.title 'Engineered human lipocalin 2 in complex with Y-DTPA' _struct.pdbx_descriptor 'engineered human lipocalin 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DSZ _struct_keywords.text 'protein design, ligand binding protein, beta barrel, engineered lipocalin, de novo protein, protein binding, Transport Protein' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? VAL A 16 ? PRO A 12 VAL A 16 5 ? 5 HELX_P HELX_P2 2 GLN A 23 ? HIS A 28 ? GLN A 23 HIS A 28 1 ? 6 HELX_P HELX_P3 3 ASN A 96 ? TYR A 100 ? ASN A 96 TYR A 100 5 ? 5 HELX_P HELX_P4 4 ALA A 145 ? LEU A 159 ? ALA A 145 LEU A 159 1 ? 15 HELX_P HELX_P5 5 PRO A 162 ? ASN A 164 ? PRO A 162 ASN A 164 5 ? 3 HELX_P HELX_P6 6 PRO B 12 ? VAL B 16 ? PRO B 12 VAL B 16 5 ? 5 HELX_P HELX_P7 7 GLN B 23 ? HIS B 28 ? GLN B 23 HIS B 28 1 ? 6 HELX_P HELX_P8 8 LEU B 42 ? ASP B 47 ? LEU B 42 ASP B 47 5 ? 6 HELX_P HELX_P9 9 ASN B 96 ? TYR B 100 ? ASN B 96 TYR B 100 5 ? 5 HELX_P HELX_P10 10 ALA B 145 ? LEU B 159 ? ALA B 145 LEU B 159 1 ? 15 HELX_P HELX_P11 11 PRO B 162 ? ASN B 164 ? PRO B 162 ASN B 164 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 175 SG ? ? A CYS 76 A CYS 175 1_555 ? ? ? ? ? ? ? 2.036 ? disulf2 disulf ? ? B CYS 76 SG ? ? ? 1_555 B CYS 175 SG ? ? B CYS 76 B CYS 175 1_555 ? ? ? ? ? ? ? 2.036 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 166 ? VAL A 167 ? ILE A 166 VAL A 167 A 2 GLY A 29 ? GLY A 38 ? GLY A 29 GLY A 38 A 3 ARG A 130 ? GLY A 139 ? ARG A 130 GLY A 139 A 4 HIS A 118 ? SER A 127 ? HIS A 118 SER A 127 A 5 LEU A 103 ? THR A 113 ? LEU A 103 THR A 113 A 6 GLU A 91 ? LEU A 94 ? GLU A 91 LEU A 94 A 7 LYS A 75 ? PRO A 85 ? LYS A 75 PRO A 85 A 8 TYR A 64 ? ARG A 72 ? TYR A 64 ARG A 72 A 9 ALA A 53 ? LEU A 58 ? ALA A 53 LEU A 58 A 10 GLY A 29 ? GLY A 38 ? GLY A 29 GLY A 38 B 1 ILE B 166 ? VAL B 167 ? ILE B 166 VAL B 167 B 2 GLY B 29 ? GLY B 38 ? GLY B 29 GLY B 38 B 3 ARG B 130 ? GLY B 139 ? ARG B 130 GLY B 139 B 4 HIS B 118 ? SER B 127 ? HIS B 118 SER B 127 B 5 LEU B 103 ? THR B 113 ? LEU B 103 THR B 113 B 6 GLU B 91 ? LEU B 94 ? GLU B 91 LEU B 94 B 7 LYS B 75 ? PRO B 85 ? LYS B 75 PRO B 85 B 8 TYR B 64 ? ARG B 72 ? TYR B 64 ARG B 72 B 9 ALA B 53 ? LEU B 58 ? ALA B 53 LEU B 58 B 10 GLY B 29 ? GLY B 38 ? GLY B 29 GLY B 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 167 ? O VAL A 167 N ARG A 36 ? N ARG A 36 A 2 3 N GLY A 35 ? N GLY A 35 O LEU A 137 ? O LEU A 137 A 3 4 O TYR A 132 ? O TYR A 132 N LYS A 125 ? N LYS A 125 A 4 5 O PHE A 122 ? O PHE A 122 N ARG A 109 ? N ARG A 109 A 5 6 O VAL A 108 ? O VAL A 108 N PHE A 92 ? N PHE A 92 A 6 7 O THR A 93 ? O THR A 93 N VAL A 84 ? N VAL A 84 A 7 8 O MET A 81 ? O MET A 81 N VAL A 66 ? N VAL A 66 A 8 9 O ASN A 65 ? O ASN A 65 N GLU A 57 ? N GLU A 57 A 9 10 O GLN A 54 ? O GLN A 54 N TRP A 31 ? N TRP A 31 B 1 2 O VAL B 167 ? O VAL B 167 N ARG B 36 ? N ARG B 36 B 2 3 N GLY B 35 ? N GLY B 35 O LEU B 137 ? O LEU B 137 B 3 4 O TYR B 132 ? O TYR B 132 N LYS B 125 ? N LYS B 125 B 4 5 O PHE B 122 ? O PHE B 122 N ARG B 109 ? N ARG B 109 B 5 6 O VAL B 108 ? O VAL B 108 N PHE B 92 ? N PHE B 92 B 6 7 O THR B 93 ? O THR B 93 N VAL B 84 ? N VAL B 84 B 7 8 O MET B 81 ? O MET B 81 N VAL B 66 ? N VAL B 66 B 8 9 O THR B 67 ? O THR B 67 N ILE B 55 ? N ILE B 55 B 9 10 O GLN B 54 ? O GLN B 54 N TRP B 31 ? N TRP B 31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 19 'BINDING SITE FOR RESIDUE LIZ A 187' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE LIZ B 187' AC3 Software ? ? ? ? 19 'BINDING SITE FOR RESIDUE YT3 B 188' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE YT3 A 188' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 GLN A 33 ? GLN A 33 . ? 1_555 ? 2 AC1 19 ARG A 36 ? ARG A 36 . ? 1_555 ? 3 AC1 19 THR A 52 ? THR A 52 . ? 1_555 ? 4 AC1 19 GLN A 54 ? GLN A 54 . ? 1_555 ? 5 AC1 19 ALA A 68 ? ALA A 68 . ? 1_555 ? 6 AC1 19 ARG A 70 ? ARG A 70 . ? 1_555 ? 7 AC1 19 ASP A 77 ? ASP A 77 . ? 1_555 ? 8 AC1 19 TYR A 78 ? TYR A 78 . ? 1_555 ? 9 AC1 19 LEU A 79 ? LEU A 79 . ? 1_555 ? 10 AC1 19 TYR A 106 ? TYR A 106 . ? 1_555 ? 11 AC1 19 PHE A 123 ? PHE A 123 . ? 1_555 ? 12 AC1 19 THR A 136 ? THR A 136 . ? 1_555 ? 13 AC1 19 HOH G . ? HOH A 189 . ? 1_555 ? 14 AC1 19 HOH G . ? HOH A 193 . ? 1_555 ? 15 AC1 19 HOH G . ? HOH A 197 . ? 1_555 ? 16 AC1 19 HOH G . ? HOH A 219 . ? 1_555 ? 17 AC1 19 HOH G . ? HOH A 323 . ? 1_555 ? 18 AC1 19 HOH G . ? HOH A 334 . ? 1_555 ? 19 AC1 19 HOH G . ? HOH A 345 . ? 1_555 ? 20 AC2 1 HOH G . ? HOH A 189 . ? 1_555 ? 21 AC3 19 LYS A 73 ? LYS A 73 . ? 1_555 ? 22 AC3 19 LYS A 74 ? LYS A 74 . ? 1_555 ? 23 AC3 19 GLN B 33 ? GLN B 33 . ? 1_555 ? 24 AC3 19 ARG B 36 ? ARG B 36 . ? 1_555 ? 25 AC3 19 THR B 52 ? THR B 52 . ? 1_555 ? 26 AC3 19 GLN B 54 ? GLN B 54 . ? 1_555 ? 27 AC3 19 ALA B 68 ? ALA B 68 . ? 1_555 ? 28 AC3 19 ARG B 70 ? ARG B 70 . ? 1_555 ? 29 AC3 19 ASP B 77 ? ASP B 77 . ? 1_555 ? 30 AC3 19 LEU B 79 ? LEU B 79 . ? 1_555 ? 31 AC3 19 TYR B 106 ? TYR B 106 . ? 1_555 ? 32 AC3 19 PHE B 123 ? PHE B 123 . ? 1_555 ? 33 AC3 19 THR B 136 ? THR B 136 . ? 1_555 ? 34 AC3 19 HOH H . ? HOH B 223 . ? 1_555 ? 35 AC3 19 HOH H . ? HOH B 231 . ? 1_555 ? 36 AC3 19 HOH H . ? HOH B 237 . ? 1_555 ? 37 AC3 19 HOH H . ? HOH B 263 . ? 1_555 ? 38 AC3 19 HOH H . ? HOH B 280 . ? 1_555 ? 39 AC3 19 HOH H . ? HOH B 296 . ? 1_555 ? 40 AC4 1 HOH H . ? HOH B 223 . ? 1_555 ? # _atom_sites.entry_id 3DSZ _atom_sites.fract_transf_matrix[1][1] 0.012143 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012143 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008686 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S Y # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 ASP 6 6 ? ? ? A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 MET 51 51 51 MET MET A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 HIS 118 118 118 HIS HIS A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 MET 120 120 120 MET MET A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 PRO 162 162 162 PRO PRO A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 GLN 174 174 174 GLN GLN A . n A 1 175 CYS 175 175 175 CYS CYS A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 SER 179 179 ? ? ? A . n A 1 180 ALA 180 180 ? ? ? A . n A 1 181 HIS 181 181 ? ? ? A . n A 1 182 HIS 182 182 ? ? ? A . n A 1 183 HIS 183 183 ? ? ? A . n A 1 184 HIS 184 184 ? ? ? A . n A 1 185 HIS 185 185 ? ? ? A . n A 1 186 HIS 186 186 ? ? ? A . n B 1 1 GLN 1 1 ? ? ? B . n B 1 2 ASP 2 2 ? ? ? B . n B 1 3 SER 3 3 ? ? ? B . n B 1 4 THR 4 4 ? ? ? B . n B 1 5 SER 5 5 ? ? ? B . n B 1 6 ASP 6 6 6 ASP ASP B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 PRO 11 11 11 PRO PRO B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 GLN 20 20 20 GLN GLN B . n B 1 21 ASN 21 21 21 ASN ASN B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 GLN 23 23 23 GLN GLN B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 ASN 25 25 25 ASN ASN B . n B 1 26 GLN 26 26 26 GLN GLN B . n B 1 27 PHE 27 27 27 PHE PHE B . n B 1 28 HIS 28 28 28 HIS HIS B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 TRP 31 31 31 TRP TRP B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 GLN 33 33 33 GLN GLN B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 ALA 37 37 37 ALA ALA B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 ASN 39 39 39 ASN ASN B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 ARG 43 43 43 ARG ARG B . n B 1 44 GLU 44 44 44 GLU GLU B . n B 1 45 ASP 45 45 45 ASP ASP B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 PRO 48 48 48 PRO PRO B . n B 1 49 GLN 49 49 49 GLN GLN B . n B 1 50 LYS 50 50 50 LYS LYS B . n B 1 51 MET 51 51 51 MET MET B . n B 1 52 THR 52 52 52 THR THR B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 GLN 54 54 54 GLN GLN B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 TYR 56 56 56 TYR TYR B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 LYS 59 59 59 LYS LYS B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 ASP 61 61 61 ASP ASP B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 SER 63 63 63 SER SER B . n B 1 64 TYR 64 64 64 TYR TYR B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 THR 67 67 67 THR THR B . n B 1 68 ALA 68 68 68 ALA ALA B . n B 1 69 VAL 69 69 69 VAL VAL B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 PHE 71 71 71 PHE PHE B . n B 1 72 ARG 72 72 72 ARG ARG B . n B 1 73 LYS 73 73 73 LYS LYS B . n B 1 74 LYS 74 74 74 LYS LYS B . n B 1 75 LYS 75 75 75 LYS LYS B . n B 1 76 CYS 76 76 76 CYS CYS B . n B 1 77 ASP 77 77 77 ASP ASP B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 LEU 79 79 79 LEU LEU B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 MET 81 81 81 MET MET B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 PHE 83 83 83 PHE PHE B . n B 1 84 VAL 84 84 84 VAL VAL B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 SER 87 87 87 SER SER B . n B 1 88 GLN 88 88 88 GLN GLN B . n B 1 89 PRO 89 89 89 PRO PRO B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 PHE 92 92 92 PHE PHE B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 ASN 96 96 96 ASN ASN B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 SER 99 99 99 SER SER B . n B 1 100 TYR 100 100 100 TYR TYR B . n B 1 101 PRO 101 101 101 PRO PRO B . n B 1 102 GLY 102 102 102 GLY GLY B . n B 1 103 LEU 103 103 103 LEU LEU B . n B 1 104 THR 104 104 104 THR THR B . n B 1 105 SER 105 105 105 SER SER B . n B 1 106 TYR 106 106 106 TYR TYR B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 VAL 108 108 108 VAL VAL B . n B 1 109 ARG 109 109 109 ARG ARG B . n B 1 110 VAL 110 110 110 VAL VAL B . n B 1 111 VAL 111 111 111 VAL VAL B . n B 1 112 SER 112 112 112 SER SER B . n B 1 113 THR 113 113 113 THR THR B . n B 1 114 ASN 114 114 114 ASN ASN B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 ASN 116 116 116 ASN ASN B . n B 1 117 GLN 117 117 117 GLN GLN B . n B 1 118 HIS 118 118 118 HIS HIS B . n B 1 119 ALA 119 119 119 ALA ALA B . n B 1 120 MET 120 120 120 MET MET B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 PHE 122 122 122 PHE PHE B . n B 1 123 PHE 123 123 123 PHE PHE B . n B 1 124 LYS 124 124 124 LYS LYS B . n B 1 125 LYS 125 125 125 LYS LYS B . n B 1 126 VAL 126 126 126 VAL VAL B . n B 1 127 SER 127 127 127 SER SER B . n B 1 128 GLN 128 128 128 GLN GLN B . n B 1 129 ASN 129 129 129 ASN ASN B . n B 1 130 ARG 130 130 130 ARG ARG B . n B 1 131 GLU 131 131 131 GLU GLU B . n B 1 132 TYR 132 132 132 TYR TYR B . n B 1 133 PHE 133 133 133 PHE PHE B . n B 1 134 SER 134 134 134 SER SER B . n B 1 135 ILE 135 135 135 ILE ILE B . n B 1 136 THR 136 136 136 THR THR B . n B 1 137 LEU 137 137 137 LEU LEU B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 GLY 139 139 139 GLY GLY B . n B 1 140 ARG 140 140 140 ARG ARG B . n B 1 141 THR 141 141 141 THR THR B . n B 1 142 LYS 142 142 142 LYS LYS B . n B 1 143 GLU 143 143 143 GLU GLU B . n B 1 144 LEU 144 144 144 LEU LEU B . n B 1 145 ALA 145 145 145 ALA ALA B . n B 1 146 SER 146 146 146 SER SER B . n B 1 147 GLU 147 147 147 GLU GLU B . n B 1 148 LEU 148 148 148 LEU LEU B . n B 1 149 LYS 149 149 149 LYS LYS B . n B 1 150 GLU 150 150 150 GLU GLU B . n B 1 151 ASN 151 151 151 ASN ASN B . n B 1 152 PHE 152 152 152 PHE PHE B . n B 1 153 ILE 153 153 153 ILE ILE B . n B 1 154 ARG 154 154 154 ARG ARG B . n B 1 155 PHE 155 155 155 PHE PHE B . n B 1 156 SER 156 156 156 SER SER B . n B 1 157 LYS 157 157 157 LYS LYS B . n B 1 158 SER 158 158 158 SER SER B . n B 1 159 LEU 159 159 159 LEU LEU B . n B 1 160 GLY 160 160 160 GLY GLY B . n B 1 161 LEU 161 161 161 LEU LEU B . n B 1 162 PRO 162 162 162 PRO PRO B . n B 1 163 GLU 163 163 163 GLU GLU B . n B 1 164 ASN 164 164 164 ASN ASN B . n B 1 165 HIS 165 165 165 HIS HIS B . n B 1 166 ILE 166 166 166 ILE ILE B . n B 1 167 VAL 167 167 167 VAL VAL B . n B 1 168 PHE 168 168 168 PHE PHE B . n B 1 169 PRO 169 169 169 PRO PRO B . n B 1 170 VAL 170 170 170 VAL VAL B . n B 1 171 PRO 171 171 171 PRO PRO B . n B 1 172 ILE 172 172 172 ILE ILE B . n B 1 173 ASP 173 173 173 ASP ASP B . n B 1 174 GLN 174 174 174 GLN GLN B . n B 1 175 CYS 175 175 175 CYS CYS B . n B 1 176 ILE 176 176 176 ILE ILE B . n B 1 177 ASP 177 177 177 ASP ASP B . n B 1 178 GLY 178 178 178 GLY GLY B . n B 1 179 SER 179 179 ? ? ? B . n B 1 180 ALA 180 180 ? ? ? B . n B 1 181 HIS 181 181 ? ? ? B . n B 1 182 HIS 182 182 ? ? ? B . n B 1 183 HIS 183 183 ? ? ? B . n B 1 184 HIS 184 184 ? ? ? B . n B 1 185 HIS 185 185 ? ? ? B . n B 1 186 HIS 186 186 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # _pdbx_phasing_MR.entry_id 3DSZ _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.423 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.579 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 38.780 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 38.780 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 # _pdbx_entry_details.entry_id 3DSZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. THIS SEQUENCE WILL BE DEPOSITED IN THE SEQUENCE DATABASE. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 329 ? ? O B HOH 385 ? ? 0.00 2 1 N A LYS 46 ? ? O A HOH 325 ? ? 2.14 3 1 OH B TYR 32 ? ? OD2 B ASP 177 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 343 ? ? 1_555 O A HOH 343 ? ? 7_466 1.25 2 1 ND2 A ASN 116 ? ? 1_555 ND2 A ASN 116 ? ? 8_666 1.60 3 1 NZ A LYS 46 ? ? 1_555 O A SER 99 ? ? 3_555 1.70 4 1 O A ASP 177 ? ? 1_555 O B HOH 323 ? ? 5_546 1.99 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A ASP 45 ? ? CA A ASP 45 ? ? CB A ASP 45 ? ? 97.65 110.60 -12.95 1.80 N 2 1 NE B ARG 140 ? ? CZ B ARG 140 ? ? NH1 B ARG 140 ? ? 125.02 120.30 4.72 0.50 N 3 1 NE B ARG 140 ? ? CZ B ARG 140 ? ? NH2 B ARG 140 ? ? 115.76 120.30 -4.54 0.50 N 4 1 C B ILE 176 ? ? N B ASP 177 ? ? CA B ASP 177 ? ? 99.11 121.70 -22.59 2.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 41 ? ? -29.78 161.14 2 1 ARG A 43 ? ? 56.58 112.51 3 1 ASP A 45 ? ? -165.51 114.56 4 1 LYS A 46 ? ? -88.38 39.40 5 1 TYR A 115 ? ? 66.06 -32.79 6 1 GLN A 117 ? ? -131.37 -56.38 7 1 ASN A 129 ? ? 59.83 19.24 8 1 CYS A 175 ? ? 68.57 -50.73 9 1 ALA B 41 ? ? -81.40 -76.95 10 1 LEU B 42 ? ? 27.25 114.57 11 1 GLU B 44 ? ? -49.52 -11.54 12 1 TYR B 115 ? ? 61.43 -37.47 13 1 GLN B 117 ? ? -138.02 -54.29 14 1 CYS B 175 ? ? 66.61 -41.85 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 1 ? A GLN 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A ASP 6 ? A ASP 6 7 1 Y 0 A ALA 41 ? A ALA 41 8 1 Y 1 A SER 179 ? A SER 179 9 1 Y 1 A ALA 180 ? A ALA 180 10 1 Y 1 A HIS 181 ? A HIS 181 11 1 Y 1 A HIS 182 ? A HIS 182 12 1 Y 1 A HIS 183 ? A HIS 183 13 1 Y 1 A HIS 184 ? A HIS 184 14 1 Y 1 A HIS 185 ? A HIS 185 15 1 Y 1 A HIS 186 ? A HIS 186 16 1 Y 1 B GLN 1 ? B GLN 1 17 1 Y 1 B ASP 2 ? B ASP 2 18 1 Y 1 B SER 3 ? B SER 3 19 1 Y 1 B THR 4 ? B THR 4 20 1 Y 1 B SER 5 ? B SER 5 21 1 Y 0 B ALA 41 ? B ALA 41 22 1 Y 1 B SER 179 ? B SER 179 23 1 Y 1 B ALA 180 ? B ALA 180 24 1 Y 1 B HIS 181 ? B HIS 181 25 1 Y 1 B HIS 182 ? B HIS 182 26 1 Y 1 B HIS 183 ? B HIS 183 27 1 Y 1 B HIS 184 ? B HIS 184 28 1 Y 1 B HIS 185 ? B HIS 185 29 1 Y 1 B HIS 186 ? B HIS 186 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;N-{(1S,2S)-2-[bis(carboxymethyl)amino]cyclohexyl}-N-{(2R)-2-[bis(carboxymethyl)amino]-3-[4-({[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]carbamothioyl}amino)phenyl]propyl}glycine ; LIZ 3 'YTTRIUM (III) ION' YT3 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LIZ 1 187 1 LIZ LIG A . D 3 YT3 1 188 1 YT3 Y+3 A . E 2 LIZ 1 187 1 LIZ LIG B . F 3 YT3 1 188 1 YT3 Y+3 B . G 4 HOH 1 189 1 HOH HOH A . G 4 HOH 2 190 2 HOH HOH A . G 4 HOH 3 191 5 HOH HOH A . G 4 HOH 4 192 7 HOH HOH A . G 4 HOH 5 193 10 HOH HOH A . G 4 HOH 6 194 12 HOH HOH A . G 4 HOH 7 195 15 HOH HOH A . G 4 HOH 8 196 17 HOH HOH A . G 4 HOH 9 197 19 HOH HOH A . G 4 HOH 10 198 26 HOH HOH A . G 4 HOH 11 199 27 HOH HOH A . G 4 HOH 12 200 28 HOH HOH A . G 4 HOH 13 201 30 HOH HOH A . G 4 HOH 14 202 31 HOH HOH A . G 4 HOH 15 203 32 HOH HOH A . G 4 HOH 16 204 34 HOH HOH A . G 4 HOH 17 205 35 HOH HOH A . G 4 HOH 18 206 39 HOH HOH A . G 4 HOH 19 207 48 HOH HOH A . G 4 HOH 20 208 49 HOH HOH A . G 4 HOH 21 209 50 HOH HOH A . G 4 HOH 22 210 52 HOH HOH A . G 4 HOH 23 211 53 HOH HOH A . G 4 HOH 24 212 55 HOH HOH A . G 4 HOH 25 213 56 HOH HOH A . G 4 HOH 26 214 57 HOH HOH A . G 4 HOH 27 215 61 HOH HOH A . G 4 HOH 28 216 64 HOH HOH A . G 4 HOH 29 217 65 HOH HOH A . G 4 HOH 30 218 66 HOH HOH A . G 4 HOH 31 219 70 HOH HOH A . G 4 HOH 32 220 71 HOH HOH A . G 4 HOH 33 221 72 HOH HOH A . G 4 HOH 34 222 74 HOH HOH A . G 4 HOH 35 223 75 HOH HOH A . G 4 HOH 36 224 76 HOH HOH A . G 4 HOH 37 225 77 HOH HOH A . G 4 HOH 38 226 78 HOH HOH A . G 4 HOH 39 227 79 HOH HOH A . G 4 HOH 40 228 82 HOH HOH A . G 4 HOH 41 229 84 HOH HOH A . G 4 HOH 42 230 86 HOH HOH A . G 4 HOH 43 231 87 HOH HOH A . G 4 HOH 44 232 88 HOH HOH A . G 4 HOH 45 233 89 HOH HOH A . G 4 HOH 46 234 90 HOH HOH A . G 4 HOH 47 235 92 HOH HOH A . G 4 HOH 48 236 93 HOH HOH A . G 4 HOH 49 237 94 HOH HOH A . G 4 HOH 50 238 95 HOH HOH A . G 4 HOH 51 239 96 HOH HOH A . G 4 HOH 52 240 97 HOH HOH A . G 4 HOH 53 241 99 HOH HOH A . G 4 HOH 54 242 100 HOH HOH A . G 4 HOH 55 243 102 HOH HOH A . G 4 HOH 56 244 106 HOH HOH A . G 4 HOH 57 245 108 HOH HOH A . G 4 HOH 58 246 111 HOH HOH A . G 4 HOH 59 247 112 HOH HOH A . G 4 HOH 60 248 114 HOH HOH A . G 4 HOH 61 249 115 HOH HOH A . G 4 HOH 62 250 116 HOH HOH A . G 4 HOH 63 251 118 HOH HOH A . G 4 HOH 64 252 121 HOH HOH A . G 4 HOH 65 253 124 HOH HOH A . G 4 HOH 66 254 128 HOH HOH A . G 4 HOH 67 255 129 HOH HOH A . G 4 HOH 68 256 131 HOH HOH A . G 4 HOH 69 257 134 HOH HOH A . G 4 HOH 70 258 135 HOH HOH A . G 4 HOH 71 259 136 HOH HOH A . G 4 HOH 72 260 137 HOH HOH A . G 4 HOH 73 261 138 HOH HOH A . G 4 HOH 74 262 139 HOH HOH A . G 4 HOH 75 263 140 HOH HOH A . G 4 HOH 76 264 141 HOH HOH A . G 4 HOH 77 265 143 HOH HOH A . G 4 HOH 78 266 146 HOH HOH A . G 4 HOH 79 267 147 HOH HOH A . G 4 HOH 80 268 153 HOH HOH A . G 4 HOH 81 269 159 HOH HOH A . G 4 HOH 82 270 161 HOH HOH A . G 4 HOH 83 271 162 HOH HOH A . G 4 HOH 84 272 163 HOH HOH A . G 4 HOH 85 273 166 HOH HOH A . G 4 HOH 86 274 168 HOH HOH A . G 4 HOH 87 275 176 HOH HOH A . G 4 HOH 88 276 179 HOH HOH A . G 4 HOH 89 277 182 HOH HOH A . G 4 HOH 90 278 183 HOH HOH A . G 4 HOH 91 279 188 HOH HOH A . G 4 HOH 92 280 189 HOH HOH A . G 4 HOH 93 281 193 HOH HOH A . G 4 HOH 94 282 201 HOH HOH A . G 4 HOH 95 283 202 HOH HOH A . G 4 HOH 96 284 203 HOH HOH A . G 4 HOH 97 285 204 HOH HOH A . G 4 HOH 98 286 205 HOH HOH A . G 4 HOH 99 287 206 HOH HOH A . G 4 HOH 100 288 207 HOH HOH A . G 4 HOH 101 289 208 HOH HOH A . G 4 HOH 102 290 209 HOH HOH A . G 4 HOH 103 291 210 HOH HOH A . G 4 HOH 104 292 211 HOH HOH A . G 4 HOH 105 293 212 HOH HOH A . G 4 HOH 106 294 213 HOH HOH A . G 4 HOH 107 295 214 HOH HOH A . G 4 HOH 108 296 215 HOH HOH A . G 4 HOH 109 297 216 HOH HOH A . G 4 HOH 110 298 217 HOH HOH A . G 4 HOH 111 299 218 HOH HOH A . G 4 HOH 112 300 219 HOH HOH A . G 4 HOH 113 301 220 HOH HOH A . G 4 HOH 114 302 221 HOH HOH A . G 4 HOH 115 303 222 HOH HOH A . G 4 HOH 116 304 223 HOH HOH A . G 4 HOH 117 305 224 HOH HOH A . G 4 HOH 118 306 225 HOH HOH A . G 4 HOH 119 307 226 HOH HOH A . G 4 HOH 120 308 227 HOH HOH A . G 4 HOH 121 309 228 HOH HOH A . G 4 HOH 122 310 229 HOH HOH A . G 4 HOH 123 311 230 HOH HOH A . G 4 HOH 124 312 255 HOH HOH A . G 4 HOH 125 313 274 HOH HOH A . G 4 HOH 126 314 292 HOH HOH A . G 4 HOH 127 315 293 HOH HOH A . G 4 HOH 128 316 294 HOH HOH A . G 4 HOH 129 317 295 HOH HOH A . G 4 HOH 130 318 296 HOH HOH A . G 4 HOH 131 319 297 HOH HOH A . G 4 HOH 132 320 298 HOH HOH A . G 4 HOH 133 321 299 HOH HOH A . G 4 HOH 134 322 300 HOH HOH A . G 4 HOH 135 323 301 HOH HOH A . G 4 HOH 136 324 302 HOH HOH A . G 4 HOH 137 325 304 HOH HOH A . G 4 HOH 138 326 306 HOH HOH A . G 4 HOH 139 327 307 HOH HOH A . G 4 HOH 140 328 309 HOH HOH A . G 4 HOH 141 329 310 HOH HOH A . G 4 HOH 142 330 311 HOH HOH A . G 4 HOH 143 331 312 HOH HOH A . G 4 HOH 144 332 313 HOH HOH A . G 4 HOH 145 333 314 HOH HOH A . G 4 HOH 146 334 315 HOH HOH A . G 4 HOH 147 335 316 HOH HOH A . G 4 HOH 148 336 317 HOH HOH A . G 4 HOH 149 337 318 HOH HOH A . G 4 HOH 150 338 319 HOH HOH A . G 4 HOH 151 339 321 HOH HOH A . G 4 HOH 152 340 322 HOH HOH A . G 4 HOH 153 341 323 HOH HOH A . G 4 HOH 154 342 324 HOH HOH A . G 4 HOH 155 343 325 HOH HOH A . G 4 HOH 156 344 326 HOH HOH A . G 4 HOH 157 345 327 HOH HOH A . G 4 HOH 158 346 233 HOH HOH A . G 4 HOH 159 347 113 HOH HOH A . H 4 HOH 1 216 63 HOH HOH B . H 4 HOH 2 218 174 HOH HOH B . H 4 HOH 3 219 303 HOH HOH B . H 4 HOH 4 220 305 HOH HOH B . H 4 HOH 5 221 308 HOH HOH B . H 4 HOH 6 222 320 HOH HOH B . H 4 HOH 7 223 3 HOH HOH B . H 4 HOH 8 224 4 HOH HOH B . H 4 HOH 9 225 6 HOH HOH B . H 4 HOH 10 226 8 HOH HOH B . H 4 HOH 11 227 9 HOH HOH B . H 4 HOH 12 228 11 HOH HOH B . H 4 HOH 13 229 13 HOH HOH B . H 4 HOH 14 230 14 HOH HOH B . H 4 HOH 15 231 16 HOH HOH B . H 4 HOH 16 232 18 HOH HOH B . H 4 HOH 17 233 20 HOH HOH B . H 4 HOH 18 234 21 HOH HOH B . H 4 HOH 19 235 22 HOH HOH B . H 4 HOH 20 236 23 HOH HOH B . H 4 HOH 21 237 24 HOH HOH B . H 4 HOH 22 238 25 HOH HOH B . H 4 HOH 23 239 29 HOH HOH B . H 4 HOH 24 240 33 HOH HOH B . H 4 HOH 25 241 36 HOH HOH B . H 4 HOH 26 242 37 HOH HOH B . H 4 HOH 27 243 38 HOH HOH B . H 4 HOH 28 244 40 HOH HOH B . H 4 HOH 29 245 41 HOH HOH B . H 4 HOH 30 246 42 HOH HOH B . H 4 HOH 31 247 43 HOH HOH B . H 4 HOH 32 248 44 HOH HOH B . H 4 HOH 33 249 45 HOH HOH B . H 4 HOH 34 250 46 HOH HOH B . H 4 HOH 35 251 47 HOH HOH B . H 4 HOH 36 252 51 HOH HOH B . H 4 HOH 37 253 54 HOH HOH B . H 4 HOH 38 254 58 HOH HOH B . H 4 HOH 39 255 59 HOH HOH B . H 4 HOH 40 256 60 HOH HOH B . H 4 HOH 41 257 62 HOH HOH B . H 4 HOH 42 258 67 HOH HOH B . H 4 HOH 43 259 68 HOH HOH B . H 4 HOH 44 260 69 HOH HOH B . H 4 HOH 45 261 73 HOH HOH B . H 4 HOH 46 262 80 HOH HOH B . H 4 HOH 47 263 81 HOH HOH B . H 4 HOH 48 264 83 HOH HOH B . H 4 HOH 49 265 85 HOH HOH B . H 4 HOH 50 266 91 HOH HOH B . H 4 HOH 51 267 98 HOH HOH B . H 4 HOH 52 268 101 HOH HOH B . H 4 HOH 53 269 103 HOH HOH B . H 4 HOH 54 270 104 HOH HOH B . H 4 HOH 55 271 105 HOH HOH B . H 4 HOH 56 272 107 HOH HOH B . H 4 HOH 57 273 109 HOH HOH B . H 4 HOH 58 274 110 HOH HOH B . H 4 HOH 59 275 117 HOH HOH B . H 4 HOH 60 276 119 HOH HOH B . H 4 HOH 61 277 120 HOH HOH B . H 4 HOH 62 278 122 HOH HOH B . H 4 HOH 63 279 123 HOH HOH B . H 4 HOH 64 280 125 HOH HOH B . H 4 HOH 65 281 126 HOH HOH B . H 4 HOH 66 282 127 HOH HOH B . H 4 HOH 67 283 130 HOH HOH B . H 4 HOH 68 284 132 HOH HOH B . H 4 HOH 69 285 133 HOH HOH B . H 4 HOH 70 286 142 HOH HOH B . H 4 HOH 71 287 144 HOH HOH B . H 4 HOH 72 288 145 HOH HOH B . H 4 HOH 73 289 148 HOH HOH B . H 4 HOH 74 290 149 HOH HOH B . H 4 HOH 75 291 150 HOH HOH B . H 4 HOH 76 292 151 HOH HOH B . H 4 HOH 77 293 152 HOH HOH B . H 4 HOH 78 294 154 HOH HOH B . H 4 HOH 79 295 155 HOH HOH B . H 4 HOH 80 296 156 HOH HOH B . H 4 HOH 81 297 157 HOH HOH B . H 4 HOH 82 298 158 HOH HOH B . H 4 HOH 83 299 160 HOH HOH B . H 4 HOH 84 300 164 HOH HOH B . H 4 HOH 85 301 165 HOH HOH B . H 4 HOH 86 302 167 HOH HOH B . H 4 HOH 87 303 169 HOH HOH B . H 4 HOH 88 304 170 HOH HOH B . H 4 HOH 89 305 171 HOH HOH B . H 4 HOH 90 306 172 HOH HOH B . H 4 HOH 91 307 173 HOH HOH B . H 4 HOH 92 308 175 HOH HOH B . H 4 HOH 93 309 177 HOH HOH B . H 4 HOH 94 310 178 HOH HOH B . H 4 HOH 95 311 180 HOH HOH B . H 4 HOH 96 312 181 HOH HOH B . H 4 HOH 97 313 184 HOH HOH B . H 4 HOH 98 314 185 HOH HOH B . H 4 HOH 99 315 186 HOH HOH B . H 4 HOH 100 316 187 HOH HOH B . H 4 HOH 101 317 190 HOH HOH B . H 4 HOH 102 318 191 HOH HOH B . H 4 HOH 103 319 192 HOH HOH B . H 4 HOH 104 320 194 HOH HOH B . H 4 HOH 105 321 195 HOH HOH B . H 4 HOH 106 322 196 HOH HOH B . H 4 HOH 107 323 197 HOH HOH B . H 4 HOH 108 324 198 HOH HOH B . H 4 HOH 109 325 199 HOH HOH B . H 4 HOH 110 326 200 HOH HOH B . H 4 HOH 111 327 231 HOH HOH B . H 4 HOH 112 328 232 HOH HOH B . H 4 HOH 113 329 234 HOH HOH B . H 4 HOH 114 330 235 HOH HOH B . H 4 HOH 115 331 236 HOH HOH B . H 4 HOH 116 332 237 HOH HOH B . H 4 HOH 117 333 238 HOH HOH B . H 4 HOH 118 334 239 HOH HOH B . H 4 HOH 119 335 240 HOH HOH B . H 4 HOH 120 336 241 HOH HOH B . H 4 HOH 121 337 242 HOH HOH B . H 4 HOH 122 338 243 HOH HOH B . H 4 HOH 123 339 244 HOH HOH B . H 4 HOH 124 340 245 HOH HOH B . H 4 HOH 125 341 246 HOH HOH B . H 4 HOH 126 342 247 HOH HOH B . H 4 HOH 127 343 248 HOH HOH B . H 4 HOH 128 344 249 HOH HOH B . H 4 HOH 129 345 250 HOH HOH B . H 4 HOH 130 346 251 HOH HOH B . H 4 HOH 131 347 252 HOH HOH B . H 4 HOH 132 348 253 HOH HOH B . H 4 HOH 133 349 254 HOH HOH B . H 4 HOH 134 350 256 HOH HOH B . H 4 HOH 135 351 257 HOH HOH B . H 4 HOH 136 352 258 HOH HOH B . H 4 HOH 137 353 259 HOH HOH B . H 4 HOH 138 354 260 HOH HOH B . H 4 HOH 139 355 261 HOH HOH B . H 4 HOH 140 356 262 HOH HOH B . H 4 HOH 141 357 263 HOH HOH B . H 4 HOH 142 358 264 HOH HOH B . H 4 HOH 143 359 265 HOH HOH B . H 4 HOH 144 360 266 HOH HOH B . H 4 HOH 145 361 267 HOH HOH B . H 4 HOH 146 362 268 HOH HOH B . H 4 HOH 147 363 269 HOH HOH B . H 4 HOH 148 364 270 HOH HOH B . H 4 HOH 149 365 271 HOH HOH B . H 4 HOH 150 366 272 HOH HOH B . H 4 HOH 151 367 273 HOH HOH B . H 4 HOH 152 368 275 HOH HOH B . H 4 HOH 153 369 276 HOH HOH B . H 4 HOH 154 370 277 HOH HOH B . H 4 HOH 155 371 278 HOH HOH B . H 4 HOH 156 372 279 HOH HOH B . H 4 HOH 157 373 280 HOH HOH B . H 4 HOH 158 374 281 HOH HOH B . H 4 HOH 159 375 282 HOH HOH B . H 4 HOH 160 376 283 HOH HOH B . H 4 HOH 161 377 284 HOH HOH B . H 4 HOH 162 378 285 HOH HOH B . H 4 HOH 163 379 286 HOH HOH B . H 4 HOH 164 380 287 HOH HOH B . H 4 HOH 165 381 288 HOH HOH B . H 4 HOH 166 382 289 HOH HOH B . H 4 HOH 167 383 290 HOH HOH B . H 4 HOH 168 384 291 HOH HOH B . H 4 HOH 169 385 328 HOH HOH B . #