data_3DT5 # _entry.id 3DT5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DT5 RCSB RCSB048455 WWPDB D_1000048455 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC7732 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3DT5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Evdokimova, E.' 2 'Kudritska, M.' 3 'Savchenko, A.' 4 'Edwards, A.M.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'X-ray crystal structure of C_terminal domain of protein of unknown function AF_0924 from Archaeoglobus fulgidus.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'OSIPIUK, J.' 1 primary 'EVDOKIMOVA, E.' 2 primary 'KUDRITSKA, M.' 3 primary 'SAVCHENKO, A.' 4 primary 'EDWARDS, A.M.' 5 primary 'JOACHIMIAK, A.' 6 # _cell.length_a 65.413 _cell.length_b 65.413 _cell.length_c 76.582 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3DT5 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3DT5 _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein AF_0924' 16048.986 1 ? ? 'C-terminal domain' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GHSNRQVQL(MSE)ARQQRLKAIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRVLP(MSE)HFKF KADKIAGSANWTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYKGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GHSNRQVQLMARQQRLKAIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGS ANWTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYKGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC7732 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 SER n 1 4 ASN n 1 5 ARG n 1 6 GLN n 1 7 VAL n 1 8 GLN n 1 9 LEU n 1 10 MSE n 1 11 ALA n 1 12 ARG n 1 13 GLN n 1 14 GLN n 1 15 ARG n 1 16 LEU n 1 17 LYS n 1 18 ALA n 1 19 ILE n 1 20 GLU n 1 21 ASP n 1 22 ARG n 1 23 LEU n 1 24 GLU n 1 25 LYS n 1 26 PHE n 1 27 TYR n 1 28 ILE n 1 29 PRO n 1 30 LEU n 1 31 ILE n 1 32 LYS n 1 33 ALA n 1 34 PHE n 1 35 SER n 1 36 SER n 1 37 TYR n 1 38 VAL n 1 39 TYR n 1 40 THR n 1 41 ALA n 1 42 GLN n 1 43 THR n 1 44 GLU n 1 45 ASP n 1 46 GLU n 1 47 ILE n 1 48 GLU n 1 49 THR n 1 50 ILE n 1 51 ILE n 1 52 THR n 1 53 CYS n 1 54 ARG n 1 55 ARG n 1 56 TYR n 1 57 LEU n 1 58 ALA n 1 59 GLY n 1 60 ASN n 1 61 ASN n 1 62 LEU n 1 63 LEU n 1 64 ARG n 1 65 VAL n 1 66 LEU n 1 67 PRO n 1 68 MSE n 1 69 HIS n 1 70 PHE n 1 71 LYS n 1 72 PHE n 1 73 LYS n 1 74 ALA n 1 75 ASP n 1 76 LYS n 1 77 ILE n 1 78 ALA n 1 79 GLY n 1 80 SER n 1 81 ALA n 1 82 ASN n 1 83 TRP n 1 84 THR n 1 85 PHE n 1 86 TYR n 1 87 ALA n 1 88 LYS n 1 89 GLU n 1 90 ASP n 1 91 PHE n 1 92 GLU n 1 93 GLN n 1 94 TRP n 1 95 LYS n 1 96 GLU n 1 97 ALA n 1 98 LEU n 1 99 ASP n 1 100 VAL n 1 101 LEU n 1 102 TRP n 1 103 GLU n 1 104 GLU n 1 105 PHE n 1 106 LEU n 1 107 GLU n 1 108 VAL n 1 109 LEU n 1 110 LYS n 1 111 GLU n 1 112 TYR n 1 113 TYR n 1 114 THR n 1 115 LEU n 1 116 SER n 1 117 GLY n 1 118 THR n 1 119 GLU n 1 120 ILE n 1 121 SER n 1 122 LEU n 1 123 PRO n 1 124 GLU n 1 125 LYS n 1 126 PRO n 1 127 ASP n 1 128 TRP n 1 129 LEU n 1 130 ILE n 1 131 GLY n 1 132 TYR n 1 133 LYS n 1 134 GLY n 1 135 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AF_0924 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 4304' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2234 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET15b modified' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y924_ARCFU _struct_ref.pdbx_db_accession O29338 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SNRQVQLMARQQRLKAIEDRLEKFYIPLIKAFSSYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGSAN WTFYAKEDFEQWKEALDVLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYK ; _struct_ref.pdbx_align_begin 65 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DT5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 133 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O29338 _struct_ref_seq.db_align_beg 65 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 195 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 65 _struct_ref_seq.pdbx_auth_seq_align_end 195 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DT5 GLY A 1 ? UNP O29338 ? ? 'EXPRESSION TAG' 63 1 1 3DT5 HIS A 2 ? UNP O29338 ? ? 'EXPRESSION TAG' 64 2 1 3DT5 GLY A 134 ? UNP O29338 ? ? 'EXPRESSION TAG' 196 3 1 3DT5 SER A 135 ? UNP O29338 ? ? 'EXPRESSION TAG' 197 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3DT5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '0.2 M calcium chloride, 25% PEG 5500 MME, 0.1 M Bis-Tris buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-06-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3DT5 _reflns.d_resolution_high 1.940 _reflns.d_resolution_low 50.000 _reflns.number_obs 12898 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_netI_over_sigmaI 13.000 _reflns.pdbx_chi_squared 1.293 _reflns.pdbx_redundancy 27.600 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 12898 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 46.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.94 _reflns_shell.d_res_low 1.97 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.881 _reflns_shell.meanI_over_sigI_obs 4.18 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.884 _reflns_shell.pdbx_redundancy 23.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 634 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DT5 _refine.ls_d_res_high 1.940 _refine.ls_d_res_low 33.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.950 _refine.ls_number_reflns_obs 12850 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.171 _refine.ls_R_factor_R_work 0.169 _refine.ls_R_factor_R_free 0.202 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 626 _refine.B_iso_mean 42.192 _refine.aniso_B[1][1] -0.370 _refine.aniso_B[2][2] -0.370 _refine.aniso_B[3][3] 0.740 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.pdbx_overall_ESU_R 0.129 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.overall_SU_ML 0.080 _refine.overall_SU_B 5.352 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.881 _refine.B_iso_max 74.78 _refine.B_iso_min 25.29 _refine.occupancy_max 1.00 _refine.occupancy_min 0.28 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 12850 _refine.ls_R_factor_all 0.171 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1003 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 1097 _refine_hist.d_res_high 1.940 _refine_hist.d_res_low 33.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1080 0.019 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1469 1.631 1.967 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 132 5.372 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 55 29.592 24.182 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 201 17.244 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 21.669 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 156 0.126 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 821 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 466 0.226 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 744 0.312 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 73 0.145 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 3 0.079 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 35 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.078 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 1 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 636 1.055 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1002 1.719 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 525 2.654 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 460 4.210 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.939 _refine_ls_shell.d_res_low 1.989 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 888 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.210 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 923 _refine_ls_shell.number_reflns_obs 923 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DT5 _struct.title 'C_terminal domain of protein of unknown function AF_0924 from Archaeoglobus fulgidus.' _struct.pdbx_descriptor 'Uncharacterized protein AF_0924' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DT5 _struct_keywords.text ;structural genomics, APC7732, unknown function, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Membrane, Transmembrane ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'authors state that putative biological unit is the same as asymmetric unit.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 15 ? PHE A 26 ? ARG A 77 PHE A 88 1 ? 12 HELX_P HELX_P2 2 PHE A 26 ? SER A 36 ? PHE A 88 SER A 98 1 ? 11 HELX_P HELX_P3 3 GLN A 42 ? THR A 52 ? GLN A 104 THR A 114 1 ? 11 HELX_P HELX_P4 4 ARG A 54 ? ALA A 58 ? ARG A 116 ALA A 120 5 ? 5 HELX_P HELX_P5 5 GLY A 59 ? LEU A 66 ? GLY A 121 LEU A 128 1 ? 8 HELX_P HELX_P6 6 PHE A 70 ? PHE A 72 ? PHE A 132 PHE A 134 5 ? 3 HELX_P HELX_P7 7 ALA A 87 ? GLY A 117 ? ALA A 149 GLY A 179 1 ? 31 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 53 SG A ? ? 1_555 A CYS 53 SG A ? A CYS 115 A CYS 115 7_555 ? ? ? ? ? ? ? 2.992 ? covale1 covale ? ? A PRO 67 C ? ? ? 1_555 A MSE 68 N ? ? A PRO 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 68 C ? ? ? 1_555 A HIS 69 N ? ? A MSE 130 A HIS 131 1_555 ? ? ? ? ? ? ? 1.322 ? metalc1 metalc ? ? A GLU 44 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 106 A CA 301 1_555 ? ? ? ? ? ? ? 2.518 ? metalc2 metalc ? ? A GLU 44 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 106 A CA 301 1_555 ? ? ? ? ? ? ? 2.507 ? metalc3 metalc ? ? A LYS 71 O ? ? ? 1_555 B CA . CA ? ? A LYS 133 A CA 301 1_555 ? ? ? ? ? ? ? 2.357 ? metalc4 metalc ? ? A ALA 74 O ? ? ? 1_555 B CA . CA ? ? A ALA 136 A CA 301 1_555 ? ? ? ? ? ? ? 2.303 ? metalc5 metalc ? ? A ASP 75 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 137 A CA 301 1_555 ? ? ? ? ? ? ? 2.388 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 74 ? ASP A 75 ? ALA A 136 ASP A 137 A 2 TRP A 83 ? PHE A 85 ? TRP A 145 PHE A 147 A 3 ILE A 130 ? GLY A 131 ? ILE A 192 GLY A 193 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 75 ? N ASP A 137 O THR A 84 ? O THR A 146 A 2 3 N PHE A 85 ? N PHE A 147 O GLY A 131 ? O GLY A 193 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 301' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE EDO A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 44 ? GLU A 106 . ? 1_555 ? 2 AC1 6 LYS A 71 ? LYS A 133 . ? 1_555 ? 3 AC1 6 ALA A 74 ? ALA A 136 . ? 1_555 ? 4 AC1 6 ASP A 75 ? ASP A 137 . ? 1_555 ? 5 AC1 6 GLU A 107 ? GLU A 169 . ? 5_555 ? 6 AC1 6 GLU A 111 ? GLU A 173 . ? 5_555 ? 7 AC2 8 ARG A 22 ? ARG A 84 . ? 1_555 ? 8 AC2 8 TYR A 27 ? TYR A 89 . ? 1_555 ? 9 AC2 8 GLY A 59 ? GLY A 121 . ? 1_555 ? 10 AC2 8 ASP A 75 ? ASP A 137 . ? 5_545 ? 11 AC2 8 GLU A 104 ? GLU A 166 . ? 1_555 ? 12 AC2 8 GLU A 107 ? GLU A 169 . ? 1_555 ? 13 AC2 8 HOH D . ? HOH A 303 . ? 5_545 ? 14 AC2 8 HOH D . ? HOH A 349 . ? 1_555 ? # _atom_sites.entry_id 3DT5 _atom_sites.fract_transf_matrix[1][1] 0.015287 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015287 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013058 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 63 ? ? ? A . n A 1 2 HIS 2 64 ? ? ? A . n A 1 3 SER 3 65 ? ? ? A . n A 1 4 ASN 4 66 ? ? ? A . n A 1 5 ARG 5 67 ? ? ? A . n A 1 6 GLN 6 68 ? ? ? A . n A 1 7 VAL 7 69 ? ? ? A . n A 1 8 GLN 8 70 ? ? ? A . n A 1 9 LEU 9 71 ? ? ? A . n A 1 10 MSE 10 72 ? ? ? A . n A 1 11 ALA 11 73 ? ? ? A . n A 1 12 ARG 12 74 ? ? ? A . n A 1 13 GLN 13 75 ? ? ? A . n A 1 14 GLN 14 76 ? ? ? A . n A 1 15 ARG 15 77 77 ARG ARG A . n A 1 16 LEU 16 78 78 LEU LEU A . n A 1 17 LYS 17 79 79 LYS LYS A . n A 1 18 ALA 18 80 80 ALA ALA A . n A 1 19 ILE 19 81 81 ILE ILE A . n A 1 20 GLU 20 82 82 GLU GLU A . n A 1 21 ASP 21 83 83 ASP ASP A . n A 1 22 ARG 22 84 84 ARG ARG A . n A 1 23 LEU 23 85 85 LEU LEU A . n A 1 24 GLU 24 86 86 GLU GLU A . n A 1 25 LYS 25 87 87 LYS LYS A . n A 1 26 PHE 26 88 88 PHE PHE A . n A 1 27 TYR 27 89 89 TYR TYR A . n A 1 28 ILE 28 90 90 ILE ILE A . n A 1 29 PRO 29 91 91 PRO PRO A . n A 1 30 LEU 30 92 92 LEU LEU A . n A 1 31 ILE 31 93 93 ILE ILE A . n A 1 32 LYS 32 94 94 LYS LYS A . n A 1 33 ALA 33 95 95 ALA ALA A . n A 1 34 PHE 34 96 96 PHE PHE A . n A 1 35 SER 35 97 97 SER SER A . n A 1 36 SER 36 98 98 SER SER A . n A 1 37 TYR 37 99 99 TYR TYR A . n A 1 38 VAL 38 100 100 VAL VAL A . n A 1 39 TYR 39 101 101 TYR TYR A . n A 1 40 THR 40 102 102 THR THR A . n A 1 41 ALA 41 103 103 ALA ALA A . n A 1 42 GLN 42 104 104 GLN GLN A . n A 1 43 THR 43 105 105 THR THR A . n A 1 44 GLU 44 106 106 GLU GLU A . n A 1 45 ASP 45 107 107 ASP ASP A . n A 1 46 GLU 46 108 108 GLU GLU A . n A 1 47 ILE 47 109 109 ILE ILE A . n A 1 48 GLU 48 110 110 GLU GLU A . n A 1 49 THR 49 111 111 THR THR A . n A 1 50 ILE 50 112 112 ILE ILE A . n A 1 51 ILE 51 113 113 ILE ILE A . n A 1 52 THR 52 114 114 THR THR A . n A 1 53 CYS 53 115 115 CYS CYS A . n A 1 54 ARG 54 116 116 ARG ARG A . n A 1 55 ARG 55 117 117 ARG ARG A . n A 1 56 TYR 56 118 118 TYR TYR A . n A 1 57 LEU 57 119 119 LEU LEU A . n A 1 58 ALA 58 120 120 ALA ALA A . n A 1 59 GLY 59 121 121 GLY GLY A . n A 1 60 ASN 60 122 122 ASN ASN A . n A 1 61 ASN 61 123 123 ASN ASN A . n A 1 62 LEU 62 124 124 LEU LEU A . n A 1 63 LEU 63 125 125 LEU LEU A . n A 1 64 ARG 64 126 126 ARG ARG A . n A 1 65 VAL 65 127 127 VAL VAL A . n A 1 66 LEU 66 128 128 LEU LEU A . n A 1 67 PRO 67 129 129 PRO PRO A . n A 1 68 MSE 68 130 130 MSE MSE A . n A 1 69 HIS 69 131 131 HIS HIS A . n A 1 70 PHE 70 132 132 PHE PHE A . n A 1 71 LYS 71 133 133 LYS LYS A . n A 1 72 PHE 72 134 134 PHE PHE A . n A 1 73 LYS 73 135 135 LYS LYS A . n A 1 74 ALA 74 136 136 ALA ALA A . n A 1 75 ASP 75 137 137 ASP ASP A . n A 1 76 LYS 76 138 138 LYS LYS A . n A 1 77 ILE 77 139 139 ILE ILE A . n A 1 78 ALA 78 140 140 ALA ALA A . n A 1 79 GLY 79 141 141 GLY GLY A . n A 1 80 SER 80 142 142 SER SER A . n A 1 81 ALA 81 143 143 ALA ALA A . n A 1 82 ASN 82 144 144 ASN ASN A . n A 1 83 TRP 83 145 145 TRP TRP A . n A 1 84 THR 84 146 146 THR THR A . n A 1 85 PHE 85 147 147 PHE PHE A . n A 1 86 TYR 86 148 148 TYR TYR A . n A 1 87 ALA 87 149 149 ALA ALA A . n A 1 88 LYS 88 150 150 LYS LYS A . n A 1 89 GLU 89 151 151 GLU GLU A . n A 1 90 ASP 90 152 152 ASP ASP A . n A 1 91 PHE 91 153 153 PHE PHE A . n A 1 92 GLU 92 154 154 GLU GLU A . n A 1 93 GLN 93 155 155 GLN GLN A . n A 1 94 TRP 94 156 156 TRP TRP A . n A 1 95 LYS 95 157 157 LYS LYS A . n A 1 96 GLU 96 158 158 GLU GLU A . n A 1 97 ALA 97 159 159 ALA ALA A . n A 1 98 LEU 98 160 160 LEU LEU A . n A 1 99 ASP 99 161 161 ASP ASP A . n A 1 100 VAL 100 162 162 VAL VAL A . n A 1 101 LEU 101 163 163 LEU LEU A . n A 1 102 TRP 102 164 164 TRP TRP A . n A 1 103 GLU 103 165 165 GLU GLU A . n A 1 104 GLU 104 166 166 GLU GLU A . n A 1 105 PHE 105 167 167 PHE PHE A . n A 1 106 LEU 106 168 168 LEU LEU A . n A 1 107 GLU 107 169 169 GLU GLU A . n A 1 108 VAL 108 170 170 VAL VAL A . n A 1 109 LEU 109 171 171 LEU LEU A . n A 1 110 LYS 110 172 172 LYS LYS A . n A 1 111 GLU 111 173 173 GLU GLU A . n A 1 112 TYR 112 174 174 TYR TYR A . n A 1 113 TYR 113 175 175 TYR TYR A . n A 1 114 THR 114 176 176 THR THR A . n A 1 115 LEU 115 177 177 LEU LEU A . n A 1 116 SER 116 178 178 SER SER A . n A 1 117 GLY 117 179 179 GLY GLY A . n A 1 118 THR 118 180 180 THR THR A . n A 1 119 GLU 119 181 181 GLU GLU A . n A 1 120 ILE 120 182 182 ILE ILE A . n A 1 121 SER 121 183 183 SER SER A . n A 1 122 LEU 122 184 184 LEU LEU A . n A 1 123 PRO 123 185 185 PRO PRO A . n A 1 124 GLU 124 186 186 GLU GLU A . n A 1 125 LYS 125 187 187 LYS LYS A . n A 1 126 PRO 126 188 188 PRO PRO A . n A 1 127 ASP 127 189 189 ASP ASP A . n A 1 128 TRP 128 190 190 TRP TRP A . n A 1 129 LEU 129 191 191 LEU LEU A . n A 1 130 ILE 130 192 192 ILE ILE A . n A 1 131 GLY 131 193 193 GLY GLY A . n A 1 132 TYR 132 194 194 TYR TYR A . n A 1 133 LYS 133 195 195 LYS LYS A . n A 1 134 GLY 134 196 ? ? ? A . n A 1 135 SER 135 197 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 301 301 CA CA A . C 3 EDO 1 302 302 EDO EDO A . D 4 HOH 1 303 1 HOH HOH A . D 4 HOH 2 304 2 HOH HOH A . D 4 HOH 3 305 3 HOH HOH A . D 4 HOH 4 306 4 HOH HOH A . D 4 HOH 5 307 5 HOH HOH A . D 4 HOH 6 308 6 HOH HOH A . D 4 HOH 7 309 7 HOH HOH A . D 4 HOH 8 310 8 HOH HOH A . D 4 HOH 9 311 9 HOH HOH A . D 4 HOH 10 312 10 HOH HOH A . D 4 HOH 11 313 11 HOH HOH A . D 4 HOH 12 314 12 HOH HOH A . D 4 HOH 13 315 13 HOH HOH A . D 4 HOH 14 316 14 HOH HOH A . D 4 HOH 15 317 15 HOH HOH A . D 4 HOH 16 318 16 HOH HOH A . D 4 HOH 17 319 17 HOH HOH A . D 4 HOH 18 320 18 HOH HOH A . D 4 HOH 19 321 19 HOH HOH A . D 4 HOH 20 322 20 HOH HOH A . D 4 HOH 21 323 21 HOH HOH A . D 4 HOH 22 324 22 HOH HOH A . D 4 HOH 23 325 23 HOH HOH A . D 4 HOH 24 326 24 HOH HOH A . D 4 HOH 25 327 25 HOH HOH A . D 4 HOH 26 328 26 HOH HOH A . D 4 HOH 27 329 27 HOH HOH A . D 4 HOH 28 330 28 HOH HOH A . D 4 HOH 29 331 29 HOH HOH A . D 4 HOH 30 332 30 HOH HOH A . D 4 HOH 31 333 31 HOH HOH A . D 4 HOH 32 334 32 HOH HOH A . D 4 HOH 33 335 33 HOH HOH A . D 4 HOH 34 336 34 HOH HOH A . D 4 HOH 35 337 35 HOH HOH A . D 4 HOH 36 338 36 HOH HOH A . D 4 HOH 37 339 37 HOH HOH A . D 4 HOH 38 340 38 HOH HOH A . D 4 HOH 39 341 39 HOH HOH A . D 4 HOH 40 342 40 HOH HOH A . D 4 HOH 41 343 41 HOH HOH A . D 4 HOH 42 344 42 HOH HOH A . D 4 HOH 43 345 43 HOH HOH A . D 4 HOH 44 346 44 HOH HOH A . D 4 HOH 45 347 45 HOH HOH A . D 4 HOH 46 348 46 HOH HOH A . D 4 HOH 47 349 47 HOH HOH A . D 4 HOH 48 350 48 HOH HOH A . D 4 HOH 49 351 49 HOH HOH A . D 4 HOH 50 352 50 HOH HOH A . D 4 HOH 51 353 51 HOH HOH A . D 4 HOH 52 354 52 HOH HOH A . D 4 HOH 53 355 53 HOH HOH A . D 4 HOH 54 356 54 HOH HOH A . D 4 HOH 55 357 55 HOH HOH A . D 4 HOH 56 358 56 HOH HOH A . D 4 HOH 57 359 57 HOH HOH A . D 4 HOH 58 360 58 HOH HOH A . D 4 HOH 59 361 59 HOH HOH A . D 4 HOH 60 362 60 HOH HOH A . D 4 HOH 61 363 61 HOH HOH A . D 4 HOH 62 364 62 HOH HOH A . D 4 HOH 63 365 63 HOH HOH A . D 4 HOH 64 366 64 HOH HOH A . D 4 HOH 65 367 65 HOH HOH A . D 4 HOH 66 368 66 HOH HOH A . D 4 HOH 67 369 67 HOH HOH A . D 4 HOH 68 370 68 HOH HOH A . D 4 HOH 69 371 69 HOH HOH A . D 4 HOH 70 372 70 HOH HOH A . D 4 HOH 71 373 71 HOH HOH A . D 4 HOH 72 374 72 HOH HOH A . D 4 HOH 73 375 73 HOH HOH A . D 4 HOH 74 376 74 HOH HOH A . D 4 HOH 75 377 75 HOH HOH A . D 4 HOH 76 378 76 HOH HOH A . D 4 HOH 77 379 77 HOH HOH A . D 4 HOH 78 380 78 HOH HOH A . D 4 HOH 79 381 79 HOH HOH A . D 4 HOH 80 382 80 HOH HOH A . D 4 HOH 81 383 81 HOH HOH A . D 4 HOH 82 384 82 HOH HOH A . D 4 HOH 83 385 83 HOH HOH A . D 4 HOH 84 386 84 HOH HOH A . D 4 HOH 85 387 85 HOH HOH A . D 4 HOH 86 388 86 HOH HOH A . D 4 HOH 87 389 87 HOH HOH A . D 4 HOH 88 390 88 HOH HOH A . D 4 HOH 89 391 89 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 68 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 130 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 318 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 44 ? A GLU 106 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OE2 ? A GLU 44 ? A GLU 106 ? 1_555 51.6 ? 2 OE1 ? A GLU 44 ? A GLU 106 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A LYS 71 ? A LYS 133 ? 1_555 75.6 ? 3 OE2 ? A GLU 44 ? A GLU 106 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A LYS 71 ? A LYS 133 ? 1_555 117.9 ? 4 OE1 ? A GLU 44 ? A GLU 106 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A ALA 74 ? A ALA 136 ? 1_555 112.1 ? 5 OE2 ? A GLU 44 ? A GLU 106 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A ALA 74 ? A ALA 136 ? 1_555 84.5 ? 6 O ? A LYS 71 ? A LYS 133 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 O ? A ALA 74 ? A ALA 136 ? 1_555 88.1 ? 7 OE1 ? A GLU 44 ? A GLU 106 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 75 ? A ASP 137 ? 1_555 125.2 ? 8 OE2 ? A GLU 44 ? A GLU 106 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 75 ? A ASP 137 ? 1_555 79.6 ? 9 O ? A LYS 71 ? A LYS 133 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 75 ? A ASP 137 ? 1_555 159.0 ? 10 O ? A ALA 74 ? A ALA 136 ? 1_555 CA ? B CA . ? A CA 301 ? 1_555 OD1 ? A ASP 75 ? A ASP 137 ? 1_555 81.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 29.9447 17.7368 12.9412 -0.0319 0.0533 0.1562 0.0136 -0.0710 -0.0314 6.5778 29.7750 13.0781 10.5485 -0.4238 -1.8641 -0.0646 -0.0185 0.0831 0.0505 -0.6663 -3.1862 0.4176 1.1081 1.1544 'X-RAY DIFFRACTION' 2 ? refined 20.1522 31.3033 15.7684 -0.0539 -0.1115 -0.0718 -0.0043 -0.0385 -0.0100 0.6030 6.3126 0.1311 -1.8104 -0.1635 0.2153 0.0020 0.0680 -0.0700 0.0443 0.0437 -0.3234 0.3640 0.0491 -0.0028 'X-RAY DIFFRACTION' 3 ? refined 21.5517 36.8174 7.2711 -0.0904 -0.1261 -0.0595 -0.0096 0.0090 -0.0134 0.8495 9.2471 4.6235 -2.7999 -1.5361 5.2489 -0.0280 0.1061 -0.0782 0.0033 -0.0039 -0.4298 -0.1168 0.0031 0.0785 'X-RAY DIFFRACTION' 4 ? refined 21.6973 26.7169 3.8653 -0.0590 -0.0885 -0.1027 0.0163 0.0156 -0.0003 3.2826 5.4700 0.3851 2.0604 0.9709 -0.0302 0.3225 -0.1521 -0.1704 0.0996 0.0217 -0.2038 -0.0673 -0.0122 -0.0766 'X-RAY DIFFRACTION' 5 ? refined 19.9210 17.4175 5.8623 -0.0835 -0.0814 -0.0721 -0.0156 0.0064 0.0013 3.5756 5.1094 0.6948 4.2653 -0.1973 -0.1146 0.2771 -0.0766 -0.2004 0.0990 0.1643 0.0051 0.1057 0.2044 0.0249 'X-RAY DIFFRACTION' 6 ? refined 12.3689 19.8085 5.3423 -0.1067 -0.0968 -0.0516 -0.0328 -0.0051 -0.0127 3.0982 1.1262 9.7030 -1.8678 1.5633 -0.9155 0.1722 -0.1289 -0.0433 -0.0333 -0.1070 0.0988 0.2806 0.0922 0.0130 'X-RAY DIFFRACTION' 7 ? refined 12.9200 35.3617 3.6346 0.0171 -0.0643 -0.0851 -0.0173 -0.0448 0.0096 7.9257 14.6210 1.1202 -0.8270 1.7190 -3.4753 0.2884 -0.2071 -0.0812 0.3374 -0.5637 -0.4349 -0.9045 0.3590 -0.0039 'X-RAY DIFFRACTION' 8 ? refined 10.4712 40.8008 13.2055 -0.1057 -0.1111 -0.0594 0.0271 -0.0003 -0.0046 0.7238 2.4456 2.3534 1.2962 0.7985 1.0017 -0.0629 0.0434 0.0195 -0.0567 0.1280 0.2208 0.1291 0.0621 -0.0446 'X-RAY DIFFRACTION' 9 ? refined 5.6986 29.2320 9.8484 -0.1307 -0.0284 -0.0714 -0.0550 0.0013 -0.0497 4.1020 11.6950 0.9080 -3.4790 0.8533 -3.2512 -0.1883 0.3229 -0.1346 0.0937 -0.2994 0.3376 -0.2587 0.3275 -0.4896 'X-RAY DIFFRACTION' 10 ? refined 14.9094 19.7288 16.8227 -0.0085 -0.1296 -0.1060 -0.0395 0.0059 0.0031 0.2523 2.6173 3.0407 0.0168 -0.1346 0.8439 0.0453 -0.0891 0.0439 -0.0790 0.1323 0.0411 0.2502 0.3595 -0.2564 'X-RAY DIFFRACTION' 11 ? refined 24.2522 12.0541 19.5328 0.0051 -0.1097 -0.1158 -0.0316 -0.1001 -0.0117 8.8714 6.9996 1.7681 0.8013 -0.5306 0.0578 0.0534 0.1320 -0.1854 -0.3388 0.1329 -0.4057 0.6758 -0.1164 -0.0498 'X-RAY DIFFRACTION' 12 ? refined 27.1850 12.0465 27.0384 1.1173 0.9633 0.5481 0.0263 -0.1012 0.1425 56.4949 23.2512 29.8910 -10.6591 41.0921 -7.9768 -1.5257 2.5395 -1.0138 -6.5822 1.7101 -0.7901 4.9564 0.0610 -3.1740 'X-RAY DIFFRACTION' 13 ? refined 10.3891 29.3802 20.3273 -0.0124 -0.0838 -0.1165 -0.1094 0.0901 -0.0523 6.2131 14.5244 14.1291 -0.6679 2.1731 -5.5048 -0.2596 0.2155 0.0441 -0.2501 -0.1703 0.5934 0.4685 0.1171 -0.4978 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 87 ? 77 A 15 A 25 'X-RAY DIFFRACTION' ? 2 2 A A 102 ? 88 A 26 A 40 'X-RAY DIFFRACTION' ? 3 3 A A 110 ? 103 A 41 A 48 'X-RAY DIFFRACTION' ? 4 4 A A 117 ? 111 A 49 A 55 'X-RAY DIFFRACTION' ? 5 5 A A 123 ? 118 A 56 A 61 'X-RAY DIFFRACTION' ? 6 6 A A 128 ? 124 A 62 A 66 'X-RAY DIFFRACTION' ? 7 7 A A 137 ? 129 A 67 A 75 'X-RAY DIFFRACTION' ? 8 8 A A 149 ? 138 A 76 A 87 'X-RAY DIFFRACTION' ? 9 9 A A 160 ? 150 A 88 A 98 'X-RAY DIFFRACTION' ? 10 10 A A 168 ? 161 A 99 A 106 'X-RAY DIFFRACTION' ? 11 11 A A 177 ? 169 A 107 A 115 'X-RAY DIFFRACTION' ? 12 12 A A 183 ? 178 A 116 A 121 'X-RAY DIFFRACTION' ? 13 13 A A 195 ? 184 A 122 A 133 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SOLVE . ? ? ? ? phasing ? ? ? 10 RESOLVE . ? ? ? ? phasing ? ? ? 11 HKL-3000 . ? ? ? ? phasing ? ? ? 12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 88 ? ? -126.79 -66.80 2 1 SER A 97 ? ? -140.95 -18.40 3 1 THR A 114 ? ? -119.73 -74.81 4 1 PHE A 132 ? ? -145.32 -45.84 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 63 ? A GLY 1 2 1 Y 1 A HIS 64 ? A HIS 2 3 1 Y 1 A SER 65 ? A SER 3 4 1 Y 1 A ASN 66 ? A ASN 4 5 1 Y 1 A ARG 67 ? A ARG 5 6 1 Y 1 A GLN 68 ? A GLN 6 7 1 Y 1 A VAL 69 ? A VAL 7 8 1 Y 1 A GLN 70 ? A GLN 8 9 1 Y 1 A LEU 71 ? A LEU 9 10 1 Y 1 A MSE 72 ? A MSE 10 11 1 Y 1 A ALA 73 ? A ALA 11 12 1 Y 1 A ARG 74 ? A ARG 12 13 1 Y 1 A GLN 75 ? A GLN 13 14 1 Y 1 A GLN 76 ? A GLN 14 15 1 Y 1 A GLY 196 ? A GLY 134 16 1 Y 1 A SER 197 ? A SER 135 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 1,2-ETHANEDIOL EDO 4 water HOH #