HEADER OXIDOREDUCTASE 15-JUL-08 3DTT TITLE CRYSTAL STRUCTURE OF A PUTATIVE F420 DEPENDENT NADP-REDUCTASE TITLE 2 (ARTH_0613) FROM ARTHROBACTER SP. FB24 AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COENZYME F420-DEPENDENT PRECURSOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER SP. FB24; SOURCE 3 ORGANISM_TAXID: 290399; SOURCE 4 GENE: YP_830112.1, ARTH_0613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3DTT 1 REMARK SEQADV REVDAT 6 24-JUL-19 3DTT 1 REMARK LINK REVDAT 5 25-OCT-17 3DTT 1 REMARK REVDAT 4 13-JUL-11 3DTT 1 VERSN REVDAT 3 23-MAR-11 3DTT 1 TITLE KEYWDS REVDAT 2 24-FEB-09 3DTT 1 VERSN REVDAT 1 12-AUG-08 3DTT 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE COENZYME F420H2:NADP+ JRNL TITL 2 OXIDOREDUCTASE (YP_830112.1) FROM ARTHROBACTER SP. FB24 AT JRNL TITL 3 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 40802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2192 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 547 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.64000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : -0.14000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.962 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3401 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2139 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4673 ; 1.566 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5283 ; 1.365 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 3.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;33.363 ;24.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ; 9.614 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.966 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3788 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 612 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 636 ; 0.172 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2252 ; 0.142 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1633 ; 0.145 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1581 ; 0.073 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 466 ; 0.070 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.109 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 49 ; 0.071 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2533 ; 0.923 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 910 ; 0.143 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3540 ; 1.381 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 2.500 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1124 ; 3.387 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 40 REMARK 3 RESIDUE RANGE : A 48 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4760 50.7960 14.2030 REMARK 3 T TENSOR REMARK 3 T11: -0.0445 T22: -0.1165 REMARK 3 T33: -0.1448 T12: 0.0081 REMARK 3 T13: -0.0140 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6494 L22: 1.4178 REMARK 3 L33: 0.5940 L12: -0.4267 REMARK 3 L13: 0.0727 L23: 0.1871 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: -0.0880 S13: 0.0323 REMARK 3 S21: 0.2772 S22: 0.0929 S23: -0.0614 REMARK 3 S31: 0.0110 S32: -0.0008 S33: 0.0069 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 42 REMARK 3 RESIDUE RANGE : B 48 B 226 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5450 28.1910 -11.9300 REMARK 3 T TENSOR REMARK 3 T11: -0.0586 T22: -0.1218 REMARK 3 T33: -0.1453 T12: -0.0064 REMARK 3 T13: 0.0077 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.5132 L22: 0.9198 REMARK 3 L33: 0.7050 L12: 0.0499 REMARK 3 L13: 0.0678 L23: 0.2959 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.0665 S13: -0.0002 REMARK 3 S21: -0.1860 S22: 0.0100 S23: -0.0051 REMARK 3 S31: -0.0571 S32: 0.0192 S33: -0.0246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. NADP (NAP) AND ACETATE (ACT) MOLECULES FROM THE CRYSTALLIZATION REMARK 3 SOLUTION ARE MODELED. REMARK 4 REMARK 4 3DTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97951,0.97966 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40912 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 58.222 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : 0.26500 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 30.0% REMARK 280 POLYETHYLENE GLYCOL 4000, 0.1M SODIUM ACETATE PH 4.6, NANODROP', REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS ANALYSIS REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLU A 41 REMARK 465 PRO A 42 REMARK 465 ASP A 43 REMARK 465 ALA A 44 REMARK 465 MSE A 45 REMARK 465 GLY A 46 REMARK 465 ALA A 47 REMARK 465 MSE B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ASP B -15 REMARK 465 LYS B -14 REMARK 465 ILE B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 ASP B 43 REMARK 465 ALA B 44 REMARK 465 MSE B 45 REMARK 465 GLY B 46 REMARK 465 ALA B 47 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 GLU A 56 CD OE1 OE2 REMARK 470 HIS A 112 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 HIS B 112 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 156 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 122 -64.45 73.39 REMARK 500 LEU A 143 -7.47 66.64 REMARK 500 ASN B 122 -65.65 75.60 REMARK 500 LEU B 143 -8.20 69.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377840 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3DTT A 1 226 UNP A0JSJ2 A0JSJ2_ARTS2 1 226 DBREF 3DTT B 1 226 UNP A0JSJ2 A0JSJ2_ARTS2 1 226 SEQADV 3DTT MSE A -18 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLY A -17 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT SER A -16 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT ASP A -15 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT LYS A -14 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT ILE A -13 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS A -12 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS A -11 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS A -10 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS A -9 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS A -8 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS A -7 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLU A -6 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT ASN A -5 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT LEU A -4 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT TYR A -3 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT PHE A -2 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLN A -1 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLY A 0 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT MSE B -18 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLY B -17 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT SER B -16 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT ASP B -15 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT LYS B -14 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT ILE B -13 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS B -12 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS B -11 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS B -10 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS B -9 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS B -8 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT HIS B -7 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLU B -6 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT ASN B -5 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT LEU B -4 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT TYR B -3 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT PHE B -2 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLN B -1 UNP A0JSJ2 EXPRESSION TAG SEQADV 3DTT GLY B 0 UNP A0JSJ2 EXPRESSION TAG SEQRES 1 A 245 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 245 ASN LEU TYR PHE GLN GLY MSE LYS ILE ALA VAL LEU GLY SEQRES 3 A 245 THR GLY THR VAL GLY ARG THR MSE ALA GLY ALA LEU ALA SEQRES 4 A 245 ASP LEU GLY HIS GLU VAL THR ILE GLY THR ARG ASP PRO SEQRES 5 A 245 LYS ALA THR LEU ALA ARG ALA GLU PRO ASP ALA MSE GLY SEQRES 6 A 245 ALA PRO PRO PHE SER GLN TRP LEU PRO GLU HIS PRO HIS SEQRES 7 A 245 VAL HIS LEU ALA ALA PHE ALA ASP VAL ALA ALA GLY ALA SEQRES 8 A 245 GLU LEU VAL VAL ASN ALA THR GLU GLY ALA SER SER ILE SEQRES 9 A 245 ALA ALA LEU THR ALA ALA GLY ALA GLU ASN LEU ALA GLY SEQRES 10 A 245 LYS ILE LEU VAL ASP ILE ALA ASN PRO LEU ASP PHE SER SEQRES 11 A 245 HIS GLY MSE PRO PRO THR LEU ASN PRO VAL ASN THR ASP SEQRES 12 A 245 SER LEU GLY GLU GLN ILE GLN ARG THR PHE PRO GLU ALA SEQRES 13 A 245 LYS VAL VAL LYS THR LEU ASN THR MSE ASN ALA SER LEU SEQRES 14 A 245 MSE VAL ASP PRO GLY ARG ALA ALA GLY GLY ASP HIS SER SEQRES 15 A 245 VAL PHE VAL SER GLY ASN ASP ALA ALA ALA LYS ALA GLU SEQRES 16 A 245 VAL ALA THR LEU LEU LYS SER LEU GLY HIS GLN ASP VAL SEQRES 17 A 245 ILE ASP LEU GLY ASP ILE THR THR ALA ARG GLY ALA GLU SEQRES 18 A 245 MSE LEU LEU PRO VAL TRP ILE ARG LEU TRP GLY ALA LEU SEQRES 19 A 245 GLY THR ALA ASN PHE ASN PHE LYS ILE ALA ARG SEQRES 1 B 245 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 245 ASN LEU TYR PHE GLN GLY MSE LYS ILE ALA VAL LEU GLY SEQRES 3 B 245 THR GLY THR VAL GLY ARG THR MSE ALA GLY ALA LEU ALA SEQRES 4 B 245 ASP LEU GLY HIS GLU VAL THR ILE GLY THR ARG ASP PRO SEQRES 5 B 245 LYS ALA THR LEU ALA ARG ALA GLU PRO ASP ALA MSE GLY SEQRES 6 B 245 ALA PRO PRO PHE SER GLN TRP LEU PRO GLU HIS PRO HIS SEQRES 7 B 245 VAL HIS LEU ALA ALA PHE ALA ASP VAL ALA ALA GLY ALA SEQRES 8 B 245 GLU LEU VAL VAL ASN ALA THR GLU GLY ALA SER SER ILE SEQRES 9 B 245 ALA ALA LEU THR ALA ALA GLY ALA GLU ASN LEU ALA GLY SEQRES 10 B 245 LYS ILE LEU VAL ASP ILE ALA ASN PRO LEU ASP PHE SER SEQRES 11 B 245 HIS GLY MSE PRO PRO THR LEU ASN PRO VAL ASN THR ASP SEQRES 12 B 245 SER LEU GLY GLU GLN ILE GLN ARG THR PHE PRO GLU ALA SEQRES 13 B 245 LYS VAL VAL LYS THR LEU ASN THR MSE ASN ALA SER LEU SEQRES 14 B 245 MSE VAL ASP PRO GLY ARG ALA ALA GLY GLY ASP HIS SER SEQRES 15 B 245 VAL PHE VAL SER GLY ASN ASP ALA ALA ALA LYS ALA GLU SEQRES 16 B 245 VAL ALA THR LEU LEU LYS SER LEU GLY HIS GLN ASP VAL SEQRES 17 B 245 ILE ASP LEU GLY ASP ILE THR THR ALA ARG GLY ALA GLU SEQRES 18 B 245 MSE LEU LEU PRO VAL TRP ILE ARG LEU TRP GLY ALA LEU SEQRES 19 B 245 GLY THR ALA ASN PHE ASN PHE LYS ILE ALA ARG MODRES 3DTT MSE A 1 MET SELENOMETHIONINE MODRES 3DTT MSE A 15 MET SELENOMETHIONINE MODRES 3DTT MSE A 114 MET SELENOMETHIONINE MODRES 3DTT MSE A 146 MET SELENOMETHIONINE MODRES 3DTT MSE A 151 MET SELENOMETHIONINE MODRES 3DTT MSE A 203 MET SELENOMETHIONINE MODRES 3DTT MSE B 1 MET SELENOMETHIONINE MODRES 3DTT MSE B 15 MET SELENOMETHIONINE MODRES 3DTT MSE B 114 MET SELENOMETHIONINE MODRES 3DTT MSE B 146 MET SELENOMETHIONINE MODRES 3DTT MSE B 151 MET SELENOMETHIONINE MODRES 3DTT MSE B 203 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 15 8 HET MSE A 114 8 HET MSE A 146 8 HET MSE A 151 8 HET MSE A 203 8 HET MSE B 1 8 HET MSE B 15 8 HET MSE B 114 8 HET MSE B 146 8 HET MSE B 151 8 HET MSE B 203 8 HET ACT A 227 4 HET NAP A 300 48 HET CL B 227 1 HET ACT B 228 4 HET NAP B 300 48 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 CL CL 1- FORMUL 8 HOH *547(H2 O) HELIX 1 1 GLY A 9 LEU A 22 1 14 HELIX 2 2 ASP A 32 ALA A 38 1 7 HELIX 3 3 PRO A 49 LEU A 54 1 6 HELIX 4 4 PRO A 55 HIS A 57 5 3 HELIX 5 5 PHE A 65 ALA A 72 1 8 HELIX 6 6 GLU A 80 ALA A 82 5 3 HELIX 7 7 SER A 83 GLY A 92 1 10 HELIX 8 8 GLY A 92 ALA A 97 1 6 HELIX 9 9 SER A 125 PHE A 134 1 10 HELIX 10 10 ASN A 147 ASP A 153 1 7 HELIX 11 11 PRO A 154 ASP A 161 5 8 HELIX 12 12 ASP A 170 LEU A 184 1 15 HELIX 13 13 ASP A 194 THR A 196 5 3 HELIX 14 14 THR A 197 MSE A 203 1 7 HELIX 15 15 LEU A 204 GLY A 216 1 13 HELIX 16 16 GLY B 9 LEU B 22 1 14 HELIX 17 17 ASP B 32 ARG B 39 1 8 HELIX 18 18 PRO B 49 LEU B 54 1 6 HELIX 19 19 PRO B 55 HIS B 57 5 3 HELIX 20 20 PHE B 65 ALA B 72 1 8 HELIX 21 21 GLU B 80 ALA B 82 5 3 HELIX 22 22 SER B 83 GLY B 92 1 10 HELIX 23 23 GLY B 92 ALA B 97 1 6 HELIX 24 24 SER B 125 PHE B 134 1 10 HELIX 25 25 ASN B 147 ASP B 153 1 7 HELIX 26 26 PRO B 154 ASP B 161 5 8 HELIX 27 27 ASP B 170 LEU B 184 1 15 HELIX 28 28 ASP B 194 THR B 196 5 3 HELIX 29 29 THR B 197 MSE B 203 1 7 HELIX 30 30 LEU B 204 GLY B 216 1 13 SHEET 1 A 6 HIS A 61 ALA A 64 0 SHEET 2 A 6 GLU A 25 THR A 30 1 N ILE A 28 O HIS A 61 SHEET 3 A 6 LYS A 2 LEU A 6 1 N VAL A 5 O GLY A 29 SHEET 4 A 6 LEU A 74 ASN A 77 1 O VAL A 76 N LEU A 6 SHEET 5 A 6 ILE A 100 ASP A 103 1 O VAL A 102 N ASN A 77 SHEET 6 A 6 LYS A 138 LYS A 141 1 O VAL A 140 N LEU A 101 SHEET 1 B 2 LEU A 108 ASP A 109 0 SHEET 2 B 2 THR A 117 LEU A 118 -1 O THR A 117 N ASP A 109 SHEET 1 C 2 VAL A 164 SER A 167 0 SHEET 2 C 2 VAL A 189 GLY A 193 1 O ILE A 190 N VAL A 164 SHEET 1 D 2 ASN A 221 ALA A 225 0 SHEET 2 D 2 ASN B 221 ALA B 225 -1 O ASN B 221 N ALA A 225 SHEET 1 E 8 HIS B 61 ALA B 64 0 SHEET 2 E 8 GLU B 25 THR B 30 1 N ILE B 28 O HIS B 61 SHEET 3 E 8 LYS B 2 LEU B 6 1 N VAL B 5 O GLY B 29 SHEET 4 E 8 LEU B 74 ASN B 77 1 O VAL B 76 N LEU B 6 SHEET 5 E 8 ILE B 100 ASP B 103 1 O VAL B 102 N ASN B 77 SHEET 6 E 8 LYS B 138 THR B 142 1 O VAL B 140 N ASP B 103 SHEET 7 E 8 VAL B 164 SER B 167 -1 O SER B 167 N LYS B 141 SHEET 8 E 8 VAL B 189 GLY B 193 1 O ILE B 190 N VAL B 164 SHEET 1 F 2 LEU B 108 ASP B 109 0 SHEET 2 F 2 THR B 117 LEU B 118 -1 O THR B 117 N ASP B 109 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C THR A 14 N MSE A 15 1555 1555 1.33 LINK C MSE A 15 N ALA A 16 1555 1555 1.33 LINK C GLY A 113 N MSE A 114 1555 1555 1.34 LINK C MSE A 114 N PRO A 115 1555 1555 1.36 LINK C THR A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N ASN A 147 1555 1555 1.33 LINK C LEU A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N VAL A 152 1555 1555 1.33 LINK C GLU A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N LEU A 204 1555 1555 1.35 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C THR B 14 N MSE B 15 1555 1555 1.34 LINK C MSE B 15 N ALA B 16 1555 1555 1.34 LINK C GLY B 113 N MSE B 114 1555 1555 1.34 LINK C MSE B 114 N PRO B 115 1555 1555 1.36 LINK C THR B 145 N MSE B 146 1555 1555 1.34 LINK C MSE B 146 N ASN B 147 1555 1555 1.33 LINK C LEU B 150 N MSE B 151 1555 1555 1.34 LINK C MSE B 151 N VAL B 152 1555 1555 1.34 LINK C GLU B 202 N MSE B 203 1555 1555 1.34 LINK C MSE B 203 N LEU B 204 1555 1555 1.34 CISPEP 1 MSE A 114 PRO A 115 0 -3.35 CISPEP 2 ASN A 119 PRO A 120 0 3.66 CISPEP 3 MSE B 114 PRO B 115 0 -2.24 CISPEP 4 ASN B 119 PRO B 120 0 2.84 SITE 1 AC1 4 HIS B 57 PRO B 58 HIS B 59 HOH B 382 SITE 1 AC2 3 ASN A 106 LEU A 205 HOH A 450 SITE 1 AC3 4 ASN B 106 LEU B 108 LEU B 205 HOH B 537 SITE 1 AC4 30 GLY A 7 THR A 8 GLY A 9 THR A 10 SITE 2 AC4 30 THR A 30 ARG A 31 ARG A 39 ALA A 78 SITE 3 AC4 30 THR A 79 GLU A 80 GLY A 81 SER A 83 SITE 4 AC4 30 ILE A 104 ALA A 105 ASN A 106 ASN A 144 SITE 5 AC4 30 ASN A 147 ALA A 148 HOH A 336 HOH A 357 SITE 6 AC4 30 HOH A 399 HOH A 423 HOH A 472 HOH A 509 SITE 7 AC4 30 HOH A 518 HOH A 524 HOH A 526 HOH A 535 SITE 8 AC4 30 HOH A 539 HOH A 541 SITE 1 AC5 31 GLY B 7 THR B 8 GLY B 9 THR B 10 SITE 2 AC5 31 THR B 30 ARG B 31 ARG B 39 ALA B 78 SITE 3 AC5 31 THR B 79 GLU B 80 GLY B 81 SER B 83 SITE 4 AC5 31 ILE B 104 ALA B 105 ASN B 106 ASN B 144 SITE 5 AC5 31 ASN B 147 ALA B 148 HOH B 301 HOH B 388 SITE 6 AC5 31 HOH B 460 HOH B 492 HOH B 511 HOH B 521 SITE 7 AC5 31 HOH B 524 HOH B 531 HOH B 537 HOH B 542 SITE 8 AC5 31 HOH B 543 HOH B 545 HOH B 554 CRYST1 40.974 47.053 61.125 77.43 73.21 64.33 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024406 -0.011729 -0.006141 0.00000 SCALE2 0.000000 0.023579 -0.002543 0.00000 SCALE3 0.000000 0.000000 0.017187 0.00000