data_3DV8 # _entry.id 3DV8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DV8 RCSB RCSB048530 WWPDB D_1000048530 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 388639 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DV8 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of transcriptional regulator, Crp/Fnr family (RER070207001219) from Eubacterium rectale at 2.55 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3DV8 _cell.length_a 45.560 _cell.length_b 88.482 _cell.length_c 181.304 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DV8 _symmetry.Int_Tables_number 23 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'transcriptional regulator, Crp/Fnr family' 25856.346 1 ? ? ? ? 2 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGN(MSE)DCTGLLLVKSGQLRTYILSDEGREITLYRL FD(MSE)D(MSE)CLLSASCI(MSE)RSIQFEVTIEAEKDTDLWIIPAEIYKGI(MSE)KDSAPVANYTNEL(MSE)ATR FSDV(MSE)WLIEQI(MSE)WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITR(MSE)LRYFQVEGLVK LSRGKITILDSKRLETLQRS ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLL SASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEET SIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSKRLETLQRS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 388639 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 PHE n 1 5 GLU n 1 6 ASN n 1 7 TYR n 1 8 PHE n 1 9 PRO n 1 10 LEU n 1 11 TRP n 1 12 ASN n 1 13 ASP n 1 14 LEU n 1 15 ASN n 1 16 THR n 1 17 ALA n 1 18 GLN n 1 19 LYS n 1 20 LYS n 1 21 LEU n 1 22 ILE n 1 23 SER n 1 24 ASP n 1 25 ASN n 1 26 LEU n 1 27 ILE n 1 28 THR n 1 29 GLN n 1 30 HIS n 1 31 VAL n 1 32 LYS n 1 33 LYS n 1 34 GLY n 1 35 THR n 1 36 ILE n 1 37 ILE n 1 38 HIS n 1 39 ASN n 1 40 GLY n 1 41 ASN n 1 42 MSE n 1 43 ASP n 1 44 CYS n 1 45 THR n 1 46 GLY n 1 47 LEU n 1 48 LEU n 1 49 LEU n 1 50 VAL n 1 51 LYS n 1 52 SER n 1 53 GLY n 1 54 GLN n 1 55 LEU n 1 56 ARG n 1 57 THR n 1 58 TYR n 1 59 ILE n 1 60 LEU n 1 61 SER n 1 62 ASP n 1 63 GLU n 1 64 GLY n 1 65 ARG n 1 66 GLU n 1 67 ILE n 1 68 THR n 1 69 LEU n 1 70 TYR n 1 71 ARG n 1 72 LEU n 1 73 PHE n 1 74 ASP n 1 75 MSE n 1 76 ASP n 1 77 MSE n 1 78 CYS n 1 79 LEU n 1 80 LEU n 1 81 SER n 1 82 ALA n 1 83 SER n 1 84 CYS n 1 85 ILE n 1 86 MSE n 1 87 ARG n 1 88 SER n 1 89 ILE n 1 90 GLN n 1 91 PHE n 1 92 GLU n 1 93 VAL n 1 94 THR n 1 95 ILE n 1 96 GLU n 1 97 ALA n 1 98 GLU n 1 99 LYS n 1 100 ASP n 1 101 THR n 1 102 ASP n 1 103 LEU n 1 104 TRP n 1 105 ILE n 1 106 ILE n 1 107 PRO n 1 108 ALA n 1 109 GLU n 1 110 ILE n 1 111 TYR n 1 112 LYS n 1 113 GLY n 1 114 ILE n 1 115 MSE n 1 116 LYS n 1 117 ASP n 1 118 SER n 1 119 ALA n 1 120 PRO n 1 121 VAL n 1 122 ALA n 1 123 ASN n 1 124 TYR n 1 125 THR n 1 126 ASN n 1 127 GLU n 1 128 LEU n 1 129 MSE n 1 130 ALA n 1 131 THR n 1 132 ARG n 1 133 PHE n 1 134 SER n 1 135 ASP n 1 136 VAL n 1 137 MSE n 1 138 TRP n 1 139 LEU n 1 140 ILE n 1 141 GLU n 1 142 GLN n 1 143 ILE n 1 144 MSE n 1 145 TRP n 1 146 LYS n 1 147 SER n 1 148 LEU n 1 149 ASP n 1 150 LYS n 1 151 ARG n 1 152 VAL n 1 153 ALA n 1 154 SER n 1 155 PHE n 1 156 LEU n 1 157 LEU n 1 158 GLU n 1 159 GLU n 1 160 THR n 1 161 SER n 1 162 ILE n 1 163 GLU n 1 164 GLY n 1 165 THR n 1 166 ASN n 1 167 GLU n 1 168 LEU n 1 169 LYS n 1 170 ILE n 1 171 THR n 1 172 HIS n 1 173 GLU n 1 174 THR n 1 175 ILE n 1 176 ALA n 1 177 ASN n 1 178 HIS n 1 179 LEU n 1 180 GLY n 1 181 SER n 1 182 HIS n 1 183 ARG n 1 184 GLU n 1 185 VAL n 1 186 ILE n 1 187 THR n 1 188 ARG n 1 189 MSE n 1 190 LEU n 1 191 ARG n 1 192 TYR n 1 193 PHE n 1 194 GLN n 1 195 VAL n 1 196 GLU n 1 197 GLY n 1 198 LEU n 1 199 VAL n 1 200 LYS n 1 201 LEU n 1 202 SER n 1 203 ARG n 1 204 GLY n 1 205 LYS n 1 206 ILE n 1 207 THR n 1 208 ILE n 1 209 LEU n 1 210 ASP n 1 211 SER n 1 212 LYS n 1 213 ARG n 1 214 LEU n 1 215 GLU n 1 216 THR n 1 217 LEU n 1 218 GLN n 1 219 ARG n 1 220 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RER070207001219 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Eubacterium rectale ATCC 33656' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 515619 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 33656 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3DV8 _struct_ref.pdbx_db_accession 3DV8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GMSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLL SASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEET SIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSKRLETLQRS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DV8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 220 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3DV8 _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 219 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 219 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DV8 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.53 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 65.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.14 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;5.0% polyethylene glycol 8000, 20.0% polyethylene glycol 300, 10.0% Glycerol, 0.1M TRIS pH 8.14, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-06-15 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DV8 _reflns.d_resolution_high 2.55 _reflns.d_resolution_low 44.237 _reflns.number_obs 12310 _reflns.pdbx_Rmerge_I_obs 0.123 _reflns.pdbx_netI_over_sigmaI 7.240 _reflns.percent_possible_obs 99.300 _reflns.B_iso_Wilson_estimate 51.437 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.55 2.64 4419 ? 1136 0.728 1.9 ? ? ? ? ? 95.60 1 1 2.64 2.75 5019 ? 1238 0.588 2.4 ? ? ? ? ? 99.50 2 1 2.75 2.87 4799 ? 1193 0.438 3.0 ? ? ? ? ? 99.90 3 1 2.87 3.02 4872 ? 1206 0.353 3.8 ? ? ? ? ? 99.90 4 1 3.02 3.21 4970 ? 1229 0.259 4.8 ? ? ? ? ? 99.90 5 1 3.21 3.46 4967 ? 1242 0.156 7.0 ? ? ? ? ? 99.80 6 1 3.46 3.80 4850 ? 1216 0.108 9.4 ? ? ? ? ? 99.70 7 1 3.80 4.35 4989 ? 1246 0.071 12.2 ? ? ? ? ? 99.80 8 1 4.35 5.46 4936 ? 1256 0.064 13.1 ? ? ? ? ? 100.00 9 1 5.46 44.237 5010 ? 1348 0.067 13.6 ? ? ? ? ? 98.50 10 1 # _refine.entry_id 3DV8 _refine.ls_d_res_high 2.550 _refine.ls_d_res_low 44.237 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.320 _refine.ls_number_reflns_obs 12307 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. ; _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.262 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 593 _refine.B_iso_mean 48.961 _refine.aniso_B[1][1] 1.200 _refine.aniso_B[2][2] -1.580 _refine.aniso_B[3][3] 0.380 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.905 _refine.pdbx_overall_ESU_R 0.368 _refine.pdbx_overall_ESU_R_Free 0.268 _refine.overall_SU_ML 0.215 _refine.overall_SU_B 20.530 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1737 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1804 _refine_hist.d_res_high 2.550 _refine_hist.d_res_low 44.237 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1772 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1200 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2395 1.566 1.965 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2939 1.298 3.001 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 217 3.845 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 79 35.421 24.557 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 345 12.810 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 14.449 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 281 0.092 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1922 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 341 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 311 0.149 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1167 0.132 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 822 0.142 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 900 0.071 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 58 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 26 0.140 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 22 0.091 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.122 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1305 0.999 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 439 0.109 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1748 1.470 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 770 2.715 6.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 646 4.026 8.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.551 _refine_ls_shell.d_res_low 2.617 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.680 _refine_ls_shell.number_reflns_R_work 802 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.313 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 837 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DV8 _struct.title ;Crystal structure of a putative transcriptional regulator of the crp/fnr family (eubrec_1222) from eubacterium rectale atcc 33656 at 2.55 A resolution ; _struct.pdbx_descriptor 'transcriptional regulator, Crp/Fnr family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Cyclic nucleotide-binding domain, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, transcription ; _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.entry_id 3DV8 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATES THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 8 ? ASP A 13 ? PHE A 7 ASP A 12 5 ? 6 HELX_P HELX_P2 2 ASN A 15 ? ASP A 24 ? ASN A 14 ASP A 23 1 ? 10 HELX_P HELX_P3 3 ASN A 41 ? ASP A 43 ? ASN A 40 ASP A 42 5 ? 3 HELX_P HELX_P4 4 LEU A 79 ? MSE A 86 ? LEU A 78 MSE A 85 5 ? 8 HELX_P HELX_P5 5 ALA A 108 ? SER A 118 ? ALA A 107 SER A 117 1 ? 11 HELX_P HELX_P6 6 SER A 118 ? LYS A 146 ? SER A 117 LYS A 145 1 ? 29 HELX_P HELX_P7 7 SER A 147 ? GLY A 164 ? SER A 146 GLY A 163 1 ? 18 HELX_P HELX_P8 8 THR A 171 ? GLY A 180 ? THR A 170 GLY A 179 1 ? 10 HELX_P HELX_P9 9 HIS A 182 ? GLU A 196 ? HIS A 181 GLU A 195 1 ? 15 HELX_P HELX_P10 10 ASP A 210 ? SER A 220 ? ASP A 209 SER A 219 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 43 A CYS 83 1_555 ? ? ? ? ? ? ? 2.040 ? covale1 covale both ? A ASN 41 C ? ? ? 1_555 A MSE 42 N ? ? A ASN 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.336 ? covale2 covale both ? A MSE 42 C ? ? ? 1_555 A ASP 43 N ? ? A MSE 41 A ASP 42 1_555 ? ? ? ? ? ? ? 1.337 ? covale3 covale both ? A ASP 74 C ? ? ? 1_555 A MSE 75 N ? ? A ASP 73 A MSE 74 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale both ? A MSE 75 C ? ? ? 1_555 A ASP 76 N ? ? A MSE 74 A ASP 75 1_555 ? ? ? ? ? ? ? 1.336 ? covale5 covale both ? A ASP 76 C ? ? ? 1_555 A MSE 77 N ? ? A ASP 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale both ? A MSE 77 C ? ? ? 1_555 A CYS 78 N ? ? A MSE 76 A CYS 77 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale both ? A ILE 85 C ? ? ? 1_555 A MSE 86 N ? ? A ILE 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.344 ? covale8 covale both ? A MSE 86 C ? ? ? 1_555 A ARG 87 N ? ? A MSE 85 A ARG 86 1_555 ? ? ? ? ? ? ? 1.337 ? covale9 covale both ? A ILE 114 C ? ? ? 1_555 A MSE 115 N ? ? A ILE 113 A MSE 114 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale both ? A MSE 115 C ? ? ? 1_555 A LYS 116 N ? ? A MSE 114 A LYS 115 1_555 ? ? ? ? ? ? ? 1.337 ? covale11 covale both ? A LEU 128 C ? ? ? 1_555 A MSE 129 N ? ? A LEU 127 A MSE 128 1_555 ? ? ? ? ? ? ? 1.342 ? covale12 covale both ? A MSE 129 C ? ? ? 1_555 A ALA 130 N ? ? A MSE 128 A ALA 129 1_555 ? ? ? ? ? ? ? 1.336 ? covale13 covale both ? A VAL 136 C ? ? ? 1_555 A MSE 137 N ? ? A VAL 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.332 ? covale14 covale both ? A MSE 137 C ? ? ? 1_555 A TRP 138 N ? ? A MSE 136 A TRP 137 1_555 ? ? ? ? ? ? ? 1.341 ? covale15 covale both ? A ILE 143 C ? ? ? 1_555 A MSE 144 N ? ? A ILE 142 A MSE 143 1_555 ? ? ? ? ? ? ? 1.330 ? covale16 covale both ? A MSE 144 C ? ? ? 1_555 A TRP 145 N ? ? A MSE 143 A TRP 144 1_555 ? ? ? ? ? ? ? 1.331 ? covale17 covale both ? A ARG 188 C ? ? ? 1_555 A MSE 189 N ? ? A ARG 187 A MSE 188 1_555 ? ? ? ? ? ? ? 1.342 ? covale18 covale both ? A MSE 189 C ? ? ? 1_555 A LEU 190 N ? ? A MSE 188 A LEU 189 1_555 ? ? ? ? ? ? ? 1.339 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 27 ? VAL A 31 ? ILE A 26 VAL A 30 A 2 THR A 101 ? PRO A 107 ? THR A 100 PRO A 106 A 3 GLY A 46 ? SER A 52 ? GLY A 45 SER A 51 A 4 MSE A 77 ? CYS A 78 ? MSE A 76 CYS A 77 B 1 ILE A 36 ? ASN A 39 ? ILE A 35 ASN A 38 B 2 THR A 94 ? ALA A 97 ? THR A 93 ALA A 96 B 3 LEU A 55 ? LEU A 60 ? LEU A 54 LEU A 59 B 4 GLU A 66 ? LEU A 72 ? GLU A 65 LEU A 71 C 1 GLU A 167 ? LEU A 168 ? GLU A 166 LEU A 167 C 2 LYS A 205 ? ILE A 208 ? LYS A 204 ILE A 207 C 3 VAL A 199 ? SER A 202 ? VAL A 198 SER A 201 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 31 ? N VAL A 30 O THR A 101 ? O THR A 100 A 2 3 O ASP A 102 ? O ASP A 101 N SER A 52 ? N SER A 51 A 3 4 N LEU A 48 ? N LEU A 47 O CYS A 78 ? O CYS A 77 B 1 2 N HIS A 38 ? N HIS A 37 O ILE A 95 ? O ILE A 94 B 2 3 O THR A 94 ? O THR A 93 N TYR A 58 ? N TYR A 57 B 3 4 N LEU A 55 ? N LEU A 54 O LEU A 72 ? O LEU A 71 C 1 2 N LEU A 168 ? N LEU A 167 O ILE A 206 ? O ILE A 205 C 2 3 O THR A 207 ? O THR A 206 N LYS A 200 ? N LYS A 199 # _atom_sites.entry_id 3DV8 _atom_sites.fract_transf_matrix[1][1] 0.021949 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011302 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005516 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 SER 3 2 ? ? ? A . n A 1 4 PHE 4 3 ? ? ? A . n A 1 5 GLU 5 4 4 GLU GLU A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 TYR 7 6 6 TYR TYR A . n A 1 8 PHE 8 7 7 PHE PHE A . n A 1 9 PRO 9 8 8 PRO PRO A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 TRP 11 10 10 TRP TRP A . n A 1 12 ASN 12 11 11 ASN ASN A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ASN 15 14 14 ASN ASN A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 ASP 24 23 23 ASP ASP A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 HIS 30 29 29 HIS HIS A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 LYS 32 31 31 LYS LYS A . n A 1 33 LYS 33 32 32 LYS LYS A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 THR 35 34 34 THR THR A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 HIS 38 37 37 HIS HIS A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 ASN 41 40 40 ASN ASN A . n A 1 42 MSE 42 41 41 MSE MSE A . n A 1 43 ASP 43 42 42 ASP ASP A . n A 1 44 CYS 44 43 43 CYS CYS A . n A 1 45 THR 45 44 44 THR THR A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 GLN 54 53 53 GLN GLN A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 THR 57 56 56 THR THR A . n A 1 58 TYR 58 57 57 TYR TYR A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 SER 61 60 60 SER SER A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLY 64 63 63 GLY GLY A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 THR 68 67 67 THR THR A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 PHE 73 72 72 PHE PHE A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 MSE 75 74 74 MSE MSE A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 MSE 77 76 76 MSE MSE A . n A 1 78 CYS 78 77 77 CYS CYS A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 SER 81 80 80 SER SER A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 CYS 84 83 83 CYS CYS A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 MSE 86 85 85 MSE MSE A . n A 1 87 ARG 87 86 86 ARG ARG A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 ILE 89 88 88 ILE ILE A . n A 1 90 GLN 90 89 89 GLN GLN A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 THR 101 100 100 THR THR A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 TRP 104 103 103 TRP TRP A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 PRO 107 106 106 PRO PRO A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 TYR 111 110 110 TYR TYR A . n A 1 112 LYS 112 111 111 LYS LYS A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 ILE 114 113 113 ILE ILE A . n A 1 115 MSE 115 114 114 MSE MSE A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 ASN 123 122 122 ASN ASN A . n A 1 124 TYR 124 123 123 TYR TYR A . n A 1 125 THR 125 124 124 THR THR A . n A 1 126 ASN 126 125 125 ASN ASN A . n A 1 127 GLU 127 126 126 GLU GLU A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 MSE 129 128 128 MSE MSE A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 THR 131 130 130 THR THR A . n A 1 132 ARG 132 131 131 ARG ARG A . n A 1 133 PHE 133 132 132 PHE PHE A . n A 1 134 SER 134 133 133 SER SER A . n A 1 135 ASP 135 134 134 ASP ASP A . n A 1 136 VAL 136 135 135 VAL VAL A . n A 1 137 MSE 137 136 136 MSE MSE A . n A 1 138 TRP 138 137 137 TRP TRP A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 GLN 142 141 141 GLN GLN A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 MSE 144 143 143 MSE MSE A . n A 1 145 TRP 145 144 144 TRP TRP A . n A 1 146 LYS 146 145 145 LYS LYS A . n A 1 147 SER 147 146 146 SER SER A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 ASP 149 148 148 ASP ASP A . n A 1 150 LYS 150 149 149 LYS LYS A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 VAL 152 151 151 VAL VAL A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 SER 154 153 153 SER SER A . n A 1 155 PHE 155 154 154 PHE PHE A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 GLU 158 157 157 GLU GLU A . n A 1 159 GLU 159 158 158 GLU GLU A . n A 1 160 THR 160 159 159 THR THR A . n A 1 161 SER 161 160 160 SER SER A . n A 1 162 ILE 162 161 161 ILE ILE A . n A 1 163 GLU 163 162 162 GLU GLU A . n A 1 164 GLY 164 163 163 GLY GLY A . n A 1 165 THR 165 164 164 THR THR A . n A 1 166 ASN 166 165 165 ASN ASN A . n A 1 167 GLU 167 166 166 GLU GLU A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 LYS 169 168 168 LYS LYS A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 THR 171 170 170 THR THR A . n A 1 172 HIS 172 171 171 HIS HIS A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 THR 174 173 173 THR THR A . n A 1 175 ILE 175 174 174 ILE ILE A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 ASN 177 176 176 ASN ASN A . n A 1 178 HIS 178 177 177 HIS HIS A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 GLY 180 179 179 GLY GLY A . n A 1 181 SER 181 180 180 SER SER A . n A 1 182 HIS 182 181 181 HIS HIS A . n A 1 183 ARG 183 182 182 ARG ARG A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 VAL 185 184 184 VAL VAL A . n A 1 186 ILE 186 185 185 ILE ILE A . n A 1 187 THR 187 186 186 THR THR A . n A 1 188 ARG 188 187 187 ARG ARG A . n A 1 189 MSE 189 188 188 MSE MSE A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 TYR 192 191 191 TYR TYR A . n A 1 193 PHE 193 192 192 PHE PHE A . n A 1 194 GLN 194 193 193 GLN GLN A . n A 1 195 VAL 195 194 194 VAL VAL A . n A 1 196 GLU 196 195 195 GLU GLU A . n A 1 197 GLY 197 196 196 GLY GLY A . n A 1 198 LEU 198 197 197 LEU LEU A . n A 1 199 VAL 199 198 198 VAL VAL A . n A 1 200 LYS 200 199 199 LYS LYS A . n A 1 201 LEU 201 200 200 LEU LEU A . n A 1 202 SER 202 201 201 SER SER A . n A 1 203 ARG 203 202 202 ARG ARG A . n A 1 204 GLY 204 203 203 GLY GLY A . n A 1 205 LYS 205 204 204 LYS LYS A . n A 1 206 ILE 206 205 205 ILE ILE A . n A 1 207 THR 207 206 206 THR THR A . n A 1 208 ILE 208 207 207 ILE ILE A . n A 1 209 LEU 209 208 208 LEU LEU A . n A 1 210 ASP 210 209 209 ASP ASP A . n A 1 211 SER 211 210 210 SER SER A . n A 1 212 LYS 212 211 211 LYS LYS A . n A 1 213 ARG 213 212 212 ARG ARG A . n A 1 214 LEU 214 213 213 LEU LEU A . n A 1 215 GLU 215 214 214 GLU GLU A . n A 1 216 THR 216 215 215 THR THR A . n A 1 217 LEU 217 216 216 LEU LEU A . n A 1 218 GLN 218 217 217 GLN GLN A . n A 1 219 ARG 219 218 218 ARG ARG A . n A 1 220 SER 220 219 219 SER SER A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 220 1 HOH HOH A . B 2 HOH 2 221 2 HOH HOH A . B 2 HOH 3 222 3 HOH HOH A . B 2 HOH 4 223 4 HOH HOH A . B 2 HOH 5 224 5 HOH HOH A . B 2 HOH 6 225 6 HOH HOH A . B 2 HOH 7 226 7 HOH HOH A . B 2 HOH 8 227 8 HOH HOH A . B 2 HOH 9 228 9 HOH HOH A . B 2 HOH 10 229 10 HOH HOH A . B 2 HOH 11 230 11 HOH HOH A . B 2 HOH 12 231 12 HOH HOH A . B 2 HOH 13 232 13 HOH HOH A . B 2 HOH 14 233 14 HOH HOH A . B 2 HOH 15 234 15 HOH HOH A . B 2 HOH 16 235 16 HOH HOH A . B 2 HOH 17 236 17 HOH HOH A . B 2 HOH 18 237 18 HOH HOH A . B 2 HOH 19 238 19 HOH HOH A . B 2 HOH 20 239 20 HOH HOH A . B 2 HOH 21 240 21 HOH HOH A . B 2 HOH 22 241 22 HOH HOH A . B 2 HOH 23 242 23 HOH HOH A . B 2 HOH 24 243 24 HOH HOH A . B 2 HOH 25 244 25 HOH HOH A . B 2 HOH 26 245 26 HOH HOH A . B 2 HOH 27 246 27 HOH HOH A . B 2 HOH 28 247 28 HOH HOH A . B 2 HOH 29 248 29 HOH HOH A . B 2 HOH 30 249 30 HOH HOH A . B 2 HOH 31 250 31 HOH HOH A . B 2 HOH 32 251 32 HOH HOH A . B 2 HOH 33 252 33 HOH HOH A . B 2 HOH 34 253 34 HOH HOH A . B 2 HOH 35 254 35 HOH HOH A . B 2 HOH 36 255 36 HOH HOH A . B 2 HOH 37 256 37 HOH HOH A . B 2 HOH 38 257 38 HOH HOH A . B 2 HOH 39 258 39 HOH HOH A . B 2 HOH 40 259 40 HOH HOH A . B 2 HOH 41 260 41 HOH HOH A . B 2 HOH 42 261 42 HOH HOH A . B 2 HOH 43 262 43 HOH HOH A . B 2 HOH 44 263 44 HOH HOH A . B 2 HOH 45 264 45 HOH HOH A . B 2 HOH 46 265 46 HOH HOH A . B 2 HOH 47 266 47 HOH HOH A . B 2 HOH 48 267 48 HOH HOH A . B 2 HOH 49 268 49 HOH HOH A . B 2 HOH 50 269 50 HOH HOH A . B 2 HOH 51 270 51 HOH HOH A . B 2 HOH 52 271 52 HOH HOH A . B 2 HOH 53 272 53 HOH HOH A . B 2 HOH 54 273 54 HOH HOH A . B 2 HOH 55 274 55 HOH HOH A . B 2 HOH 56 275 56 HOH HOH A . B 2 HOH 57 276 57 HOH HOH A . B 2 HOH 58 277 58 HOH HOH A . B 2 HOH 59 278 59 HOH HOH A . B 2 HOH 60 279 60 HOH HOH A . B 2 HOH 61 280 61 HOH HOH A . B 2 HOH 62 281 62 HOH HOH A . B 2 HOH 63 282 63 HOH HOH A . B 2 HOH 64 283 64 HOH HOH A . B 2 HOH 65 284 65 HOH HOH A . B 2 HOH 66 285 66 HOH HOH A . B 2 HOH 67 286 67 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 42 A MSE 41 ? MET SELENOMETHIONINE 2 A MSE 75 A MSE 74 ? MET SELENOMETHIONINE 3 A MSE 77 A MSE 76 ? MET SELENOMETHIONINE 4 A MSE 86 A MSE 85 ? MET SELENOMETHIONINE 5 A MSE 115 A MSE 114 ? MET SELENOMETHIONINE 6 A MSE 129 A MSE 128 ? MET SELENOMETHIONINE 7 A MSE 137 A MSE 136 ? MET SELENOMETHIONINE 8 A MSE 144 A MSE 143 ? MET SELENOMETHIONINE 9 A MSE 189 A MSE 188 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3260 ? 1 MORE -37 ? 1 'SSA (A^2)' 20400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 45.5600000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 4 'Structure model' '_struct_ref_seq.db_align_beg' 13 4 'Structure model' '_struct_ref_seq.db_align_end' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 16.8570 _pdbx_refine_tls.origin_y 12.5880 _pdbx_refine_tls.origin_z 59.1770 _pdbx_refine_tls.T[1][1] -0.1387 _pdbx_refine_tls.T[2][2] -0.2537 _pdbx_refine_tls.T[3][3] -0.1604 _pdbx_refine_tls.T[1][2] -0.0222 _pdbx_refine_tls.T[1][3] 0.0511 _pdbx_refine_tls.T[2][3] 0.0416 _pdbx_refine_tls.L[1][1] 1.3259 _pdbx_refine_tls.L[2][2] 1.9321 _pdbx_refine_tls.L[3][3] 3.8969 _pdbx_refine_tls.L[1][2] -0.5728 _pdbx_refine_tls.L[1][3] 1.5926 _pdbx_refine_tls.L[2][3] -0.4221 _pdbx_refine_tls.S[1][1] 0.0824 _pdbx_refine_tls.S[2][2] 0.0367 _pdbx_refine_tls.S[3][3] -0.1192 _pdbx_refine_tls.S[1][2] -0.0571 _pdbx_refine_tls.S[1][3] -0.0520 _pdbx_refine_tls.S[2][3] 0.0758 _pdbx_refine_tls.S[2][1] 0.2665 _pdbx_refine_tls.S[3][1] -0.2073 _pdbx_refine_tls.S[3][2] -0.0660 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 5 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 220 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 219 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3DV8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 43 ? ? -154.71 64.04 2 1 PHE A 72 ? ? -116.64 -169.00 3 1 MSE A 74 ? ? 78.16 -11.15 4 1 LYS A 168 ? ? -106.56 63.79 5 1 ARG A 202 ? ? -48.39 102.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 86 ? CG ? A ARG 87 CG 2 1 Y 1 A ARG 86 ? CD ? A ARG 87 CD 3 1 Y 1 A ARG 86 ? NE ? A ARG 87 NE 4 1 Y 1 A ARG 86 ? CZ ? A ARG 87 CZ 5 1 Y 1 A ARG 86 ? NH1 ? A ARG 87 NH1 6 1 Y 1 A ARG 86 ? NH2 ? A ARG 87 NH2 7 1 Y 1 A LYS 211 ? CG ? A LYS 212 CG 8 1 Y 1 A LYS 211 ? CD ? A LYS 212 CD 9 1 Y 1 A LYS 211 ? CE ? A LYS 212 CE 10 1 Y 1 A LYS 211 ? NZ ? A LYS 212 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A SER 2 ? A SER 3 4 1 Y 1 A PHE 3 ? A PHE 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #