HEADER STRUCTURAL PROTEIN, MOTOR PROTEIN 18-JUL-08 3DVP TITLE PAK1 PEPTIDE BOUND LC8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 1, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8 KDA DYNEIN LIGHT CHAIN, CUT UP PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: P21 ACTIVATED KINASE PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CTP, CDLC1, DDLC1, CG6998; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE REPRESENTS A SEGMENT FROM NATURALLY SOURCE 13 OCCURRING PROTEIN IN HUMANS KEYWDS PAK1, LC8, DLC1, PIN, COMPLEX, DYNEIN, MICROTUBULE, MOTOR PROTEIN, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.M.LIGHTCAP,J.C.WILLIAMS REVDAT 6 21-FEB-24 3DVP 1 REMARK REVDAT 5 20-OCT-21 3DVP 1 SEQADV REVDAT 4 04-APR-18 3DVP 1 REMARK REVDAT 3 25-OCT-17 3DVP 1 REMARK REVDAT 2 13-JUL-11 3DVP 1 VERSN REVDAT 1 20-JAN-09 3DVP 0 JRNL AUTH C.M.LIGHTCAP,S.SUN,J.D.LEAR,U.RODECK,T.POLENOVA,J.C.WILLIAMS JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE PAK1-LC8 JRNL TITL 2 INTERACTION. JRNL REF J.BIOL.CHEM. V. 283 27314 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18650427 JRNL DOI 10.1074/JBC.M800758200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 6095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 5.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1551 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2098 ; 2.162 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 184 ; 6.501 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;35.703 ;24.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 260 ;18.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;16.476 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1188 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 939 ; 0.832 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1514 ; 1.441 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 612 ; 2.529 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 584 ; 3.940 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7030 4.2320 0.6480 REMARK 3 T TENSOR REMARK 3 T11: -0.1742 T22: -0.0042 REMARK 3 T33: -0.0673 T12: 0.0306 REMARK 3 T13: 0.0129 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.2009 L22: 4.7308 REMARK 3 L33: 1.9003 L12: 0.3983 REMARK 3 L13: -0.5311 L23: -0.1771 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: -0.0807 S13: 0.0842 REMARK 3 S21: 0.0870 S22: -0.0056 S23: 0.2623 REMARK 3 S31: -0.0640 S32: -0.2733 S33: -0.0275 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3600 -4.1790 0.4430 REMARK 3 T TENSOR REMARK 3 T11: -0.1809 T22: -0.0183 REMARK 3 T33: -0.0533 T12: -0.0047 REMARK 3 T13: 0.0171 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 2.2134 L22: 3.2616 REMARK 3 L33: 2.4185 L12: -0.2852 REMARK 3 L13: 0.9232 L23: 0.2043 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0077 S13: -0.0812 REMARK 3 S21: 0.0267 S22: 0.0011 S23: -0.1535 REMARK 3 S31: -0.0319 S32: 0.2272 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 213 C 221 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3520 10.0790 -2.1680 REMARK 3 T TENSOR REMARK 3 T11: -0.0834 T22: -0.1304 REMARK 3 T33: 0.0117 T12: -0.0131 REMARK 3 T13: 0.0040 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 6.7897 L22: 7.2044 REMARK 3 L33: 10.5954 L12: -0.0598 REMARK 3 L13: 0.0283 L23: -3.9017 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: 0.2542 S13: 0.1826 REMARK 3 S21: -0.3135 S22: -0.3001 S23: -0.1238 REMARK 3 S31: -1.1616 S32: 0.1721 S33: 0.2604 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 213 D 221 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6220 -10.0060 -2.5130 REMARK 3 T TENSOR REMARK 3 T11: -0.0487 T22: -0.0574 REMARK 3 T33: 0.0099 T12: 0.0114 REMARK 3 T13: -0.0389 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.3387 L22: 3.9436 REMARK 3 L33: 20.2870 L12: 1.0005 REMARK 3 L13: -1.1788 L23: 7.2145 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: 0.1184 S13: -0.1007 REMARK 3 S21: 0.0198 S22: -0.0936 S23: 0.0005 REMARK 3 S31: 0.8546 S32: 0.2668 S33: -0.0119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : XENOCS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ONYX REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 11.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 200 MM NACL, 27% (W/V) PEG REMARK 280 4000, AND 10% 0.1 M (NH4)6COCL3, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 273K, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.70200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.40050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.68900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.40050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.70200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.68900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ASP A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 MET B -1 REMARK 465 ASP B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 ARG B 4 REMARK 465 THR C 212 REMARK 465 THR D 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 PRO C 213 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 13 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP B 47 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 13 129.43 -176.03 REMARK 500 ASN A 51 150.03 76.38 REMARK 500 ASN A 61 100.09 -162.82 REMARK 500 ARG A 71 7.45 80.22 REMARK 500 ASN B 51 155.03 60.45 REMARK 500 SER B 88 118.56 -168.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DVH RELATED DB: PDB REMARK 900 RELATED ID: 3DVT RELATED DB: PDB DBREF 3DVP A 1 89 UNP Q24117 DYL1_DROME 1 89 DBREF 3DVP B 1 89 UNP Q24117 DYL1_DROME 1 89 DBREF 3DVP C 212 221 UNP Q13153 PAK1_HUMAN 212 221 DBREF 3DVP D 212 221 UNP Q13153 PAK1_HUMAN 212 221 SEQADV 3DVP MET A -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVP ASP A 0 UNP Q24117 EXPRESSION TAG SEQADV 3DVP PRO A 36 UNP Q24117 LYS 36 ENGINEERED MUTATION SEQADV 3DVP MET B -1 UNP Q24117 EXPRESSION TAG SEQADV 3DVP ASP B 0 UNP Q24117 EXPRESSION TAG SEQADV 3DVP PRO B 36 UNP Q24117 LYS 36 ENGINEERED MUTATION SEQRES 1 A 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 A 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 A 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU PRO ASP SEQRES 4 A 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 A 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 A 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 A 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 B 91 MET ASP MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA SEQRES 2 B 91 ASP MET SER GLU GLU MET GLN GLN ASP ALA VAL ASP CYS SEQRES 3 B 91 ALA THR GLN ALA LEU GLU LYS TYR ASN ILE GLU PRO ASP SEQRES 4 B 91 ILE ALA ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR SEQRES 5 B 91 ASN PRO THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SEQRES 6 B 91 SER TYR VAL THR HIS GLU THR ARG HIS PHE ILE TYR PHE SEQRES 7 B 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 C 10 THR PRO THR ARG ASP VAL ALA THR SER PRO SEQRES 1 D 10 THR PRO THR ARG ASP VAL ALA THR SER PRO FORMUL 5 HOH *49(H2 O) HELIX 1 1 SER A 14 TYR A 32 1 19 HELIX 2 2 ILE A 34 ASN A 51 1 18 HELIX 3 3 SER B 14 TYR B 32 1 19 HELIX 4 4 ILE B 34 ASN B 51 1 18 SHEET 1 A 6 ALA A 6 ASP A 12 0 SHEET 2 A 6 PHE A 73 LEU A 78 -1 O TYR A 77 N VAL A 7 SHEET 3 A 6 ALA A 82 LYS A 87 -1 O ILE A 83 N PHE A 76 SHEET 4 A 6 TRP A 54 GLU A 69 -1 N GLU A 69 O LYS A 87 SHEET 5 A 6 TRP B 54 GLU B 69 -1 O VAL B 58 N GLY A 63 SHEET 6 A 6 THR C 214 THR C 219 0 SHEET 1 B 6 VAL B 7 MET B 13 0 SHEET 2 B 6 HIS B 72 LEU B 78 -1 O PHE B 73 N ASP B 12 SHEET 3 B 6 VAL B 81 LYS B 87 -1 O ILE B 83 N PHE B 76 SHEET 4 B 6 TRP B 54 GLU B 69 -1 N GLY B 59 O ALA B 82 SHEET 5 B 6 TRP A 54 GLU A 69 -1 N GLY A 63 O VAL B 58 SHEET 6 B 6 THR D 214 THR D 219 0 CISPEP 1 PRO A 52 THR A 53 0 -0.11 CISPEP 2 PRO B 52 THR B 53 0 0.41 CRYST1 47.404 57.378 64.801 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015432 0.00000