HEADER TRANSPORT PROTEIN 22-JUL-08 3DWD TITLE CRYSTAL STRUCTURE OF THE ARFGAP DOMAIN OF HUMAN ARFGAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ARF-GAP DOMAIN, UNP RESIDUES 1-128; COMPND 5 SYNONYM: ADP-RIBOSYLATION FACTOR 1 GTPASE-ACTIVATING PROTEIN, ARF1 COMPND 6 GAP, ARF1-DIRECTED GTPASE-ACTIVATING PROTEIN, GAP PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARFGAP1, ARF1GAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-V2R; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC (GI:145307000) KEYWDS GAP, GTPASE ACTIVATING PROTEIN, STRUCTURAL GENOMICS CONSORTIUM (SGC), KEYWDS 2 ER-GOLGI TRANSPORT, GOLGI APPARATUS, GTPASE ACTIVATION, METAL- KEYWDS 3 BINDING, PHOSPHOPROTEIN, PROTEIN TRANSPORT, TRANSPORT, ZINC-FINGER, KEYWDS 4 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,Y.TONG,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,M.WILKSTROM,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 30-AUG-23 3DWD 1 REMARK SEQADV REVDAT 4 25-OCT-17 3DWD 1 REMARK REVDAT 3 13-JUL-11 3DWD 1 VERSN REVDAT 2 24-FEB-09 3DWD 1 VERSN REVDAT 1 05-AUG-08 3DWD 0 JRNL AUTH L.NEDYALKOVA,Y.TONG,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,C.BOUNTRA,M.WILKSTROM,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE ARFGAP DOMAIN OF HUMAN ARFGAP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.794 REMARK 3 FREE R VALUE TEST SET COUNT : 588 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1757 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.32100 REMARK 3 B22 (A**2) : -2.32100 REMARK 3 B33 (A**2) : 3.48100 REMARK 3 B12 (A**2) : -1.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.354 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1806 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1201 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2445 ; 1.445 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2886 ; 0.924 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.217 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;36.521 ;23.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;15.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2043 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 396 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1138 ; 1.309 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 466 ; 0.324 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1791 ; 2.025 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 668 ; 1.536 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 654 ; 2.181 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6908 -9.3906 0.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.0442 REMARK 3 T33: 0.1984 T12: 0.0244 REMARK 3 T13: -0.0384 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 6.2822 L22: 9.9794 REMARK 3 L33: 3.7666 L12: 2.9208 REMARK 3 L13: -1.3290 L23: -1.8800 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.2826 S13: -0.8669 REMARK 3 S21: 0.7418 S22: -0.0760 S23: -0.7078 REMARK 3 S31: -0.2738 S32: -0.2281 S33: 0.0594 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0409 -12.3032 -38.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.1536 T22: 0.1217 REMARK 3 T33: 0.2309 T12: 0.0379 REMARK 3 T13: 0.0087 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 4.7280 L22: 7.9902 REMARK 3 L33: 2.9756 L12: 1.6051 REMARK 3 L13: 0.5877 L23: 1.8558 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0035 S13: 0.8760 REMARK 3 S21: -0.3478 S22: -0.0811 S23: 0.3805 REMARK 3 S31: -0.3787 S32: -0.2922 S33: 0.0879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. HYDROGENS HAVE BEEN REMARK 3 ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3DWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12298 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM REMARK 200 STARTING MODEL: PDB ENTRY 2GF9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, 0.1M TRIS, 1:100 REMARK 280 CHYMOTRYPSIN, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS REMARK 300 MACROMOLECULE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 65 REMARK 465 LYS A 66 REMARK 465 GLY A 121 REMARK 465 ARG A 122 REMARK 465 GLU A 123 REMARK 465 TRP A 124 REMARK 465 SER A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 SER A 128 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 63 REMARK 465 MET B 64 REMARK 465 ASP B 65 REMARK 465 LYS B 66 REMARK 465 GLY B 121 REMARK 465 ARG B 122 REMARK 465 GLU B 123 REMARK 465 TRP B 124 REMARK 465 SER B 125 REMARK 465 LEU B 126 REMARK 465 GLU B 127 REMARK 465 SER B 128 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 LEU A 43 CG CD1 CD2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 SER A 61 OG REMARK 470 VAL A 62 CG1 CG2 REMARK 470 THR A 63 OG1 CG2 REMARK 470 MET A 64 CG SD CE REMARK 470 GLU A 85 CD OE1 OE2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 SER B 3 OG REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 15 CG1 CG2 REMARK 470 GLN B 16 CD OE1 NE2 REMARK 470 ASP B 17 CG OD1 OD2 REMARK 470 LEU B 43 CG CD1 CD2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 ARG B 84 CD NE CZ NH1 NH2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 112 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 15 24.46 -71.29 REMARK 500 GLN B 16 -141.61 -118.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 22 SG REMARK 620 2 CYS A 25 SG 105.6 REMARK 620 3 CYS A 42 SG 110.1 113.2 REMARK 620 4 CYS A 45 SG 108.6 121.3 97.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 22 SG REMARK 620 2 CYS B 25 SG 102.7 REMARK 620 3 CYS B 42 SG 110.2 112.6 REMARK 620 4 CYS B 45 SG 107.2 125.7 98.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 502 DBREF 3DWD A 1 128 UNP Q8N6T3 ARFG1_HUMAN 1 128 DBREF 3DWD B 1 128 UNP Q8N6T3 ARFG1_HUMAN 1 128 SEQADV 3DWD MET A -18 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD GLY A -17 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER A -16 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER A -15 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS A -14 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS A -13 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS A -12 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS A -11 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS A -10 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS A -9 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER A -8 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER A -7 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD GLY A -6 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD LEU A -5 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD VAL A -4 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD PRO A -3 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD ARG A -2 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD GLY A -1 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER A 0 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD MET B -18 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD GLY B -17 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER B -16 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER B -15 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS B -14 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS B -13 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS B -12 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS B -11 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS B -10 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD HIS B -9 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER B -8 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER B -7 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD GLY B -6 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD LEU B -5 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD VAL B -4 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD PRO B -3 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD ARG B -2 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD GLY B -1 UNP Q8N6T3 EXPRESSION TAG SEQADV 3DWD SER B 0 UNP Q8N6T3 EXPRESSION TAG SEQRES 1 A 147 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 147 LEU VAL PRO ARG GLY SER MET ALA SER PRO ARG THR ARG SEQRES 3 A 147 LYS VAL LEU LYS GLU VAL ARG VAL GLN ASP GLU ASN ASN SEQRES 4 A 147 VAL CYS PHE GLU CYS GLY ALA PHE ASN PRO GLN TRP VAL SEQRES 5 A 147 SER VAL THR TYR GLY ILE TRP ILE CYS LEU GLU CYS SER SEQRES 6 A 147 GLY ARG HIS ARG GLY LEU GLY VAL HIS LEU SER PHE VAL SEQRES 7 A 147 ARG SER VAL THR MET ASP LYS TRP LYS ASP ILE GLU LEU SEQRES 8 A 147 GLU LYS MET LYS ALA GLY GLY ASN ALA LYS PHE ARG GLU SEQRES 9 A 147 PHE LEU GLU SER GLN GLU ASP TYR ASP PRO CYS TRP SER SEQRES 10 A 147 LEU GLN GLU LYS TYR ASN SER ARG ALA ALA ALA LEU PHE SEQRES 11 A 147 ARG ASP LYS VAL VAL ALA LEU ALA GLU GLY ARG GLU TRP SEQRES 12 A 147 SER LEU GLU SER SEQRES 1 B 147 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 147 LEU VAL PRO ARG GLY SER MET ALA SER PRO ARG THR ARG SEQRES 3 B 147 LYS VAL LEU LYS GLU VAL ARG VAL GLN ASP GLU ASN ASN SEQRES 4 B 147 VAL CYS PHE GLU CYS GLY ALA PHE ASN PRO GLN TRP VAL SEQRES 5 B 147 SER VAL THR TYR GLY ILE TRP ILE CYS LEU GLU CYS SER SEQRES 6 B 147 GLY ARG HIS ARG GLY LEU GLY VAL HIS LEU SER PHE VAL SEQRES 7 B 147 ARG SER VAL THR MET ASP LYS TRP LYS ASP ILE GLU LEU SEQRES 8 B 147 GLU LYS MET LYS ALA GLY GLY ASN ALA LYS PHE ARG GLU SEQRES 9 B 147 PHE LEU GLU SER GLN GLU ASP TYR ASP PRO CYS TRP SER SEQRES 10 B 147 LEU GLN GLU LYS TYR ASN SER ARG ALA ALA ALA LEU PHE SEQRES 11 B 147 ARG ASP LYS VAL VAL ALA LEU ALA GLU GLY ARG GLU TRP SEQRES 12 B 147 SER LEU GLU SER HET ZN A 501 1 HET UNX A 502 1 HET ZN B 501 1 HET UNX B 502 1 HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 UNX 2(X) FORMUL 7 HOH *11(H2 O) HELIX 1 1 SER A 3 VAL A 15 1 13 HELIX 2 2 CYS A 42 GLY A 53 1 12 HELIX 3 3 LYS A 68 GLY A 78 1 11 HELIX 4 4 GLY A 79 SER A 89 1 11 HELIX 5 5 SER A 98 ASN A 104 1 7 HELIX 6 6 SER A 105 GLU A 120 1 16 HELIX 7 7 SER B 3 VAL B 15 1 13 HELIX 8 8 THR B 36 GLY B 38 5 3 HELIX 9 9 CYS B 42 ARG B 50 1 9 HELIX 10 10 LYS B 68 GLY B 78 1 11 HELIX 11 11 GLY B 79 SER B 89 1 11 HELIX 12 12 SER B 98 ASN B 104 1 7 HELIX 13 13 SER B 105 GLU B 120 1 16 SHEET 1 A 3 ILE A 39 ILE A 41 0 SHEET 2 A 3 TRP A 32 SER A 34 -1 N TRP A 32 O ILE A 41 SHEET 3 A 3 VAL A 59 SER A 61 -1 O ARG A 60 N VAL A 33 SHEET 1 B 3 ILE B 39 ILE B 41 0 SHEET 2 B 3 TRP B 32 SER B 34 -1 N TRP B 32 O ILE B 41 SHEET 3 B 3 VAL B 59 SER B 61 -1 O ARG B 60 N VAL B 33 SSBOND 1 CYS A 96 CYS B 96 1555 1555 2.07 LINK SG CYS A 22 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 25 ZN ZN A 501 1555 1555 2.37 LINK SG CYS A 42 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 45 ZN ZN A 501 1555 1555 2.36 LINK SG CYS B 22 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 25 ZN ZN B 501 1555 1555 2.32 LINK SG CYS B 42 ZN ZN B 501 1555 1555 2.34 LINK SG CYS B 45 ZN ZN B 501 1555 1555 2.32 SITE 1 AC1 4 CYS A 22 CYS A 25 CYS A 42 CYS A 45 SITE 1 AC2 4 CYS B 22 CYS B 25 CYS B 42 CYS B 45 SITE 1 AC3 3 GLN B 31 CYS B 42 LEU B 43 SITE 1 AC4 3 GLN A 31 CYS A 42 LEU A 43 CRYST1 82.422 82.422 81.008 90.00 90.00 120.00 P 6 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012133 0.007005 0.000000 0.00000 SCALE2 0.000000 0.014010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012344 0.00000