data_3DWH # _entry.id 3DWH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DWH pdb_00003dwh 10.2210/pdb3dwh/pdb RCSB RCSB048575 ? ? WWPDB D_1000048575 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-21 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Source and taxonomy' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' entity 7 4 'Structure model' entity_src_nat 8 4 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 4 'Structure model' '_entity.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DWH _pdbx_database_status.recvd_initial_deposition_date 2008-07-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qian, C.' 1 'Jakoncic, J.' 2 'Zhou, M.' 3 # _citation.id primary _citation.title 'Structure and Hemimethylated CpG Binding of the SRA Domain from Human UHRF1.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 34490 _citation.page_last 34494 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18945682 _citation.pdbx_database_id_DOI 10.1074/jbc.C800169200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qian, C.' 1 ? primary 'Li, S.' 2 ? primary 'Jakoncic, J.' 3 ? primary 'Zeng, L.' 4 ? primary 'Walsh, M.J.' 5 ? primary 'Zhou, M.M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase UHRF1' 23151.871 1 6.3.2.- ? 'SRA domain, YDG Domain, residues 414-617' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? 'This sequence occurs naturally in humans.' 4 water nat water 18.015 131 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Ubiquitin-like PHD and RING finger domain-containing protein 1, Ubiquitin-like-containing PHD and RING finger domains protein 1, Inverted CCAAT box-binding protein of 90 kDa, Transcription factor ICBP90, Nuclear zinc finger protein Np95, Nuclear protein 95, HuNp95, RING finger protein 106 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGN KRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKG KSGFLVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALAN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGN KRTAEQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKG KSGFLVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALAN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 PRO n 1 6 SER n 1 7 ASN n 1 8 HIS n 1 9 TYR n 1 10 GLY n 1 11 PRO n 1 12 ILE n 1 13 PRO n 1 14 GLY n 1 15 ILE n 1 16 PRO n 1 17 VAL n 1 18 GLY n 1 19 THR n 1 20 MET n 1 21 TRP n 1 22 ARG n 1 23 PHE n 1 24 ARG n 1 25 VAL n 1 26 GLN n 1 27 VAL n 1 28 SER n 1 29 GLU n 1 30 SER n 1 31 GLY n 1 32 VAL n 1 33 HIS n 1 34 ARG n 1 35 PRO n 1 36 HIS n 1 37 VAL n 1 38 ALA n 1 39 GLY n 1 40 ILE n 1 41 HIS n 1 42 GLY n 1 43 ARG n 1 44 SER n 1 45 ASN n 1 46 ASP n 1 47 GLY n 1 48 ALA n 1 49 TYR n 1 50 SER n 1 51 LEU n 1 52 VAL n 1 53 LEU n 1 54 ALA n 1 55 GLY n 1 56 GLY n 1 57 TYR n 1 58 GLU n 1 59 ASP n 1 60 ASP n 1 61 VAL n 1 62 ASP n 1 63 HIS n 1 64 GLY n 1 65 ASN n 1 66 PHE n 1 67 PHE n 1 68 THR n 1 69 TYR n 1 70 THR n 1 71 GLY n 1 72 SER n 1 73 GLY n 1 74 GLY n 1 75 ARG n 1 76 ASP n 1 77 LEU n 1 78 SER n 1 79 GLY n 1 80 ASN n 1 81 LYS n 1 82 ARG n 1 83 THR n 1 84 ALA n 1 85 GLU n 1 86 GLN n 1 87 SER n 1 88 CYS n 1 89 ASP n 1 90 GLN n 1 91 LYS n 1 92 LEU n 1 93 THR n 1 94 ASN n 1 95 THR n 1 96 ASN n 1 97 ARG n 1 98 ALA n 1 99 LEU n 1 100 ALA n 1 101 LEU n 1 102 ASN n 1 103 CYS n 1 104 PHE n 1 105 ALA n 1 106 PRO n 1 107 ILE n 1 108 ASN n 1 109 ASP n 1 110 GLN n 1 111 GLU n 1 112 GLY n 1 113 ALA n 1 114 GLU n 1 115 ALA n 1 116 LYS n 1 117 ASP n 1 118 TRP n 1 119 ARG n 1 120 SER n 1 121 GLY n 1 122 LYS n 1 123 PRO n 1 124 VAL n 1 125 ARG n 1 126 VAL n 1 127 VAL n 1 128 ARG n 1 129 ASN n 1 130 VAL n 1 131 LYS n 1 132 GLY n 1 133 GLY n 1 134 LYS n 1 135 ASN n 1 136 SER n 1 137 LYS n 1 138 TYR n 1 139 ALA n 1 140 PRO n 1 141 ALA n 1 142 GLU n 1 143 GLY n 1 144 ASN n 1 145 ARG n 1 146 TYR n 1 147 ASP n 1 148 GLY n 1 149 ILE n 1 150 TYR n 1 151 LYS n 1 152 VAL n 1 153 VAL n 1 154 LYS n 1 155 TYR n 1 156 TRP n 1 157 PRO n 1 158 GLU n 1 159 LYS n 1 160 GLY n 1 161 LYS n 1 162 SER n 1 163 GLY n 1 164 PHE n 1 165 LEU n 1 166 VAL n 1 167 TRP n 1 168 ARG n 1 169 TYR n 1 170 LEU n 1 171 LEU n 1 172 ARG n 1 173 ARG n 1 174 ASP n 1 175 ASP n 1 176 ASP n 1 177 GLU n 1 178 PRO n 1 179 GLY n 1 180 PRO n 1 181 TRP n 1 182 THR n 1 183 LYS n 1 184 GLU n 1 185 GLY n 1 186 LYS n 1 187 ASP n 1 188 ARG n 1 189 ILE n 1 190 LYS n 1 191 LYS n 1 192 LEU n 1 193 GLY n 1 194 LEU n 1 195 THR n 1 196 MET n 1 197 GLN n 1 198 TYR n 1 199 PRO n 1 200 GLU n 1 201 GLY n 1 202 TYR n 1 203 LEU n 1 204 GLU n 1 205 ALA n 1 206 LEU n 1 207 ALA n 1 208 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'UHRF1, ICBP90, NP95, RNF106' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(de3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 410 410 GLY GLY A . n A 1 2 SER 2 411 411 SER SER A . n A 1 3 HIS 3 412 412 HIS HIS A . n A 1 4 MET 4 413 413 MET MET A . n A 1 5 PRO 5 414 414 PRO PRO A . n A 1 6 SER 6 415 415 SER SER A . n A 1 7 ASN 7 416 416 ASN ASN A . n A 1 8 HIS 8 417 417 HIS HIS A . n A 1 9 TYR 9 418 418 TYR TYR A . n A 1 10 GLY 10 419 419 GLY GLY A . n A 1 11 PRO 11 420 420 PRO PRO A . n A 1 12 ILE 12 421 421 ILE ILE A . n A 1 13 PRO 13 422 422 PRO PRO A . n A 1 14 GLY 14 423 423 GLY GLY A . n A 1 15 ILE 15 424 424 ILE ILE A . n A 1 16 PRO 16 425 425 PRO PRO A . n A 1 17 VAL 17 426 426 VAL VAL A . n A 1 18 GLY 18 427 427 GLY GLY A . n A 1 19 THR 19 428 428 THR THR A . n A 1 20 MET 20 429 429 MET MET A . n A 1 21 TRP 21 430 430 TRP TRP A . n A 1 22 ARG 22 431 431 ARG ARG A . n A 1 23 PHE 23 432 432 PHE PHE A . n A 1 24 ARG 24 433 433 ARG ARG A . n A 1 25 VAL 25 434 434 VAL VAL A . n A 1 26 GLN 26 435 435 GLN GLN A . n A 1 27 VAL 27 436 436 VAL VAL A . n A 1 28 SER 28 437 437 SER SER A . n A 1 29 GLU 29 438 438 GLU GLU A . n A 1 30 SER 30 439 439 SER SER A . n A 1 31 GLY 31 440 440 GLY GLY A . n A 1 32 VAL 32 441 441 VAL VAL A . n A 1 33 HIS 33 442 442 HIS HIS A . n A 1 34 ARG 34 443 443 ARG ARG A . n A 1 35 PRO 35 444 444 PRO PRO A . n A 1 36 HIS 36 445 445 HIS HIS A . n A 1 37 VAL 37 446 446 VAL VAL A . n A 1 38 ALA 38 447 447 ALA ALA A . n A 1 39 GLY 39 448 448 GLY GLY A . n A 1 40 ILE 40 449 449 ILE ILE A . n A 1 41 HIS 41 450 450 HIS HIS A . n A 1 42 GLY 42 451 451 GLY GLY A . n A 1 43 ARG 43 452 452 ARG ARG A . n A 1 44 SER 44 453 453 SER SER A . n A 1 45 ASN 45 454 454 ASN ASN A . n A 1 46 ASP 46 455 455 ASP ASP A . n A 1 47 GLY 47 456 456 GLY GLY A . n A 1 48 ALA 48 457 457 ALA ALA A . n A 1 49 TYR 49 458 458 TYR TYR A . n A 1 50 SER 50 459 459 SER SER A . n A 1 51 LEU 51 460 460 LEU LEU A . n A 1 52 VAL 52 461 461 VAL VAL A . n A 1 53 LEU 53 462 462 LEU LEU A . n A 1 54 ALA 54 463 463 ALA ALA A . n A 1 55 GLY 55 464 464 GLY GLY A . n A 1 56 GLY 56 465 465 GLY GLY A . n A 1 57 TYR 57 466 466 TYR TYR A . n A 1 58 GLU 58 467 467 GLU ALA A . n A 1 59 ASP 59 468 468 ASP ASP A . n A 1 60 ASP 60 469 469 ASP ASP A . n A 1 61 VAL 61 470 470 VAL VAL A . n A 1 62 ASP 62 471 471 ASP ASP A . n A 1 63 HIS 63 472 472 HIS HIS A . n A 1 64 GLY 64 473 473 GLY GLY A . n A 1 65 ASN 65 474 474 ASN ASN A . n A 1 66 PHE 66 475 475 PHE PHE A . n A 1 67 PHE 67 476 476 PHE PHE A . n A 1 68 THR 68 477 477 THR THR A . n A 1 69 TYR 69 478 478 TYR TYR A . n A 1 70 THR 70 479 479 THR THR A . n A 1 71 GLY 71 480 480 GLY GLY A . n A 1 72 SER 72 481 481 SER SER A . n A 1 73 GLY 73 482 482 GLY GLY A . n A 1 74 GLY 74 483 483 GLY GLY A . n A 1 75 ARG 75 484 ? ? ? A . n A 1 76 ASP 76 485 ? ? ? A . n A 1 77 LEU 77 486 ? ? ? A . n A 1 78 SER 78 487 ? ? ? A . n A 1 79 GLY 79 488 ? ? ? A . n A 1 80 ASN 80 489 ? ? ? A . n A 1 81 LYS 81 490 ? ? ? A . n A 1 82 ARG 82 491 ? ? ? A . n A 1 83 THR 83 492 ? ? ? A . n A 1 84 ALA 84 493 ? ? ? A . n A 1 85 GLU 85 494 ? ? ? A . n A 1 86 GLN 86 495 ? ? ? A . n A 1 87 SER 87 496 496 SER SER A . n A 1 88 CYS 88 497 497 CYS CYS A . n A 1 89 ASP 89 498 498 ASP ASP A . n A 1 90 GLN 90 499 499 GLN GLN A . n A 1 91 LYS 91 500 500 LYS LYS A . n A 1 92 LEU 92 501 501 LEU LEU A . n A 1 93 THR 93 502 502 THR THR A . n A 1 94 ASN 94 503 503 ASN ASN A . n A 1 95 THR 95 504 504 THR THR A . n A 1 96 ASN 96 505 505 ASN ASN A . n A 1 97 ARG 97 506 506 ARG ARG A . n A 1 98 ALA 98 507 507 ALA ALA A . n A 1 99 LEU 99 508 508 LEU LEU A . n A 1 100 ALA 100 509 509 ALA ALA A . n A 1 101 LEU 101 510 510 LEU LEU A . n A 1 102 ASN 102 511 511 ASN ASN A . n A 1 103 CYS 103 512 512 CYS CYS A . n A 1 104 PHE 104 513 513 PHE PHE A . n A 1 105 ALA 105 514 514 ALA ALA A . n A 1 106 PRO 106 515 515 PRO PRO A . n A 1 107 ILE 107 516 516 ILE ILE A . n A 1 108 ASN 108 517 517 ASN ASN A . n A 1 109 ASP 109 518 518 ASP ASP A . n A 1 110 GLN 110 519 519 GLN GLN A . n A 1 111 GLU 111 520 520 GLU GLU A . n A 1 112 GLY 112 521 521 GLY GLY A . n A 1 113 ALA 113 522 522 ALA ALA A . n A 1 114 GLU 114 523 523 GLU GLU A . n A 1 115 ALA 115 524 524 ALA ALA A . n A 1 116 LYS 116 525 525 LYS LYS A . n A 1 117 ASP 117 526 526 ASP ASP A . n A 1 118 TRP 118 527 527 TRP TRP A . n A 1 119 ARG 119 528 528 ARG ARG A . n A 1 120 SER 120 529 529 SER SER A . n A 1 121 GLY 121 530 530 GLY GLY A . n A 1 122 LYS 122 531 531 LYS LYS A . n A 1 123 PRO 123 532 532 PRO PRO A . n A 1 124 VAL 124 533 533 VAL VAL A . n A 1 125 ARG 125 534 534 ARG ARG A . n A 1 126 VAL 126 535 535 VAL VAL A . n A 1 127 VAL 127 536 536 VAL VAL A . n A 1 128 ARG 128 537 537 ARG ARG A . n A 1 129 ASN 129 538 538 ASN ASN A . n A 1 130 VAL 130 539 539 VAL VAL A . n A 1 131 LYS 131 540 540 LYS LYS A . n A 1 132 GLY 132 541 541 GLY GLY A . n A 1 133 GLY 133 542 542 GLY GLY A . n A 1 134 LYS 134 543 543 LYS LYS A . n A 1 135 ASN 135 544 544 ASN ASN A . n A 1 136 SER 136 545 545 SER SER A . n A 1 137 LYS 137 546 546 LYS LYS A . n A 1 138 TYR 138 547 547 TYR TYR A . n A 1 139 ALA 139 548 548 ALA ALA A . n A 1 140 PRO 140 549 549 PRO PRO A . n A 1 141 ALA 141 550 550 ALA ALA A . n A 1 142 GLU 142 551 551 GLU GLU A . n A 1 143 GLY 143 552 552 GLY GLY A . n A 1 144 ASN 144 553 553 ASN ASN A . n A 1 145 ARG 145 554 554 ARG ARG A . n A 1 146 TYR 146 555 555 TYR TYR A . n A 1 147 ASP 147 556 556 ASP ASP A . n A 1 148 GLY 148 557 557 GLY GLY A . n A 1 149 ILE 149 558 558 ILE ILE A . n A 1 150 TYR 150 559 559 TYR TYR A . n A 1 151 LYS 151 560 560 LYS LYS A . n A 1 152 VAL 152 561 561 VAL VAL A . n A 1 153 VAL 153 562 562 VAL VAL A . n A 1 154 LYS 154 563 563 LYS LYS A . n A 1 155 TYR 155 564 564 TYR TYR A . n A 1 156 TRP 156 565 565 TRP TRP A . n A 1 157 PRO 157 566 566 PRO PRO A . n A 1 158 GLU 158 567 567 GLU GLU A . n A 1 159 LYS 159 568 568 LYS LYS A . n A 1 160 GLY 160 569 569 GLY GLY A . n A 1 161 LYS 161 570 570 LYS LYS A . n A 1 162 SER 162 571 571 SER SER A . n A 1 163 GLY 163 572 572 GLY GLY A . n A 1 164 PHE 164 573 573 PHE PHE A . n A 1 165 LEU 165 574 574 LEU LEU A . n A 1 166 VAL 166 575 575 VAL VAL A . n A 1 167 TRP 167 576 576 TRP TRP A . n A 1 168 ARG 168 577 577 ARG ARG A . n A 1 169 TYR 169 578 578 TYR TYR A . n A 1 170 LEU 170 579 579 LEU LEU A . n A 1 171 LEU 171 580 580 LEU LEU A . n A 1 172 ARG 172 581 581 ARG ARG A . n A 1 173 ARG 173 582 582 ARG ARG A . n A 1 174 ASP 174 583 583 ASP ASP A . n A 1 175 ASP 175 584 584 ASP ASP A . n A 1 176 ASP 176 585 585 ASP ASP A . n A 1 177 GLU 177 586 586 GLU GLU A . n A 1 178 PRO 178 587 587 PRO PRO A . n A 1 179 GLY 179 588 588 GLY GLY A . n A 1 180 PRO 180 589 589 PRO PRO A . n A 1 181 TRP 181 590 590 TRP TRP A . n A 1 182 THR 182 591 591 THR THR A . n A 1 183 LYS 183 592 592 LYS LYS A . n A 1 184 GLU 184 593 593 GLU GLU A . n A 1 185 GLY 185 594 594 GLY GLY A . n A 1 186 LYS 186 595 595 LYS LYS A . n A 1 187 ASP 187 596 596 ASP ASP A . n A 1 188 ARG 188 597 597 ARG ARG A . n A 1 189 ILE 189 598 598 ILE ILE A . n A 1 190 LYS 190 599 599 LYS LYS A . n A 1 191 LYS 191 600 600 LYS LYS A . n A 1 192 LEU 192 601 601 LEU LEU A . n A 1 193 GLY 193 602 602 GLY GLY A . n A 1 194 LEU 194 603 603 LEU LEU A . n A 1 195 THR 195 604 604 THR THR A . n A 1 196 MET 196 605 605 MET MET A . n A 1 197 GLN 197 606 606 GLN GLN A . n A 1 198 TYR 198 607 607 TYR TYR A . n A 1 199 PRO 199 608 608 PRO PRO A . n A 1 200 GLU 200 609 609 GLU GLU A . n A 1 201 GLY 201 610 610 GLY GLY A . n A 1 202 TYR 202 611 611 TYR TYR A . n A 1 203 LEU 203 612 612 LEU LEU A . n A 1 204 GLU 204 613 613 GLU GLU A . n A 1 205 ALA 205 614 614 ALA GLY A . n A 1 206 LEU 206 615 ? ? ? A . n A 1 207 ALA 207 616 ? ? ? A . n A 1 208 ASN 208 617 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 1 SO4 SO4 A . C 2 SO4 1 618 1 SO4 SO4 A . D 3 GOL 1 619 1 GOL GOL A . E 4 HOH 1 620 1 HOH HOH A . E 4 HOH 2 621 2 HOH HOH A . E 4 HOH 3 622 4 HOH HOH A . E 4 HOH 4 623 5 HOH HOH A . E 4 HOH 5 624 6 HOH HOH A . E 4 HOH 6 625 7 HOH HOH A . E 4 HOH 7 626 8 HOH HOH A . E 4 HOH 8 627 9 HOH HOH A . E 4 HOH 9 628 10 HOH HOH A . E 4 HOH 10 629 11 HOH HOH A . E 4 HOH 11 630 13 HOH HOH A . E 4 HOH 12 631 14 HOH HOH A . E 4 HOH 13 632 15 HOH HOH A . E 4 HOH 14 633 16 HOH HOH A . E 4 HOH 15 634 17 HOH HOH A . E 4 HOH 16 635 18 HOH HOH A . E 4 HOH 17 636 19 HOH HOH A . E 4 HOH 18 637 20 HOH HOH A . E 4 HOH 19 638 22 HOH HOH A . E 4 HOH 20 639 24 HOH HOH A . E 4 HOH 21 640 25 HOH HOH A . E 4 HOH 22 641 27 HOH HOH A . E 4 HOH 23 642 28 HOH HOH A . E 4 HOH 24 643 29 HOH HOH A . E 4 HOH 25 644 30 HOH HOH A . E 4 HOH 26 645 31 HOH HOH A . E 4 HOH 27 646 32 HOH HOH A . E 4 HOH 28 647 33 HOH HOH A . E 4 HOH 29 648 35 HOH HOH A . E 4 HOH 30 649 36 HOH HOH A . E 4 HOH 31 650 37 HOH HOH A . E 4 HOH 32 651 38 HOH HOH A . E 4 HOH 33 652 40 HOH HOH A . E 4 HOH 34 653 43 HOH HOH A . E 4 HOH 35 654 44 HOH HOH A . E 4 HOH 36 655 45 HOH HOH A . E 4 HOH 37 656 47 HOH HOH A . E 4 HOH 38 657 48 HOH HOH A . E 4 HOH 39 658 49 HOH HOH A . E 4 HOH 40 659 50 HOH HOH A . E 4 HOH 41 660 51 HOH HOH A . E 4 HOH 42 661 52 HOH HOH A . E 4 HOH 43 662 54 HOH HOH A . E 4 HOH 44 663 55 HOH HOH A . E 4 HOH 45 664 56 HOH HOH A . E 4 HOH 46 665 57 HOH HOH A . E 4 HOH 47 666 59 HOH HOH A . E 4 HOH 48 667 60 HOH HOH A . E 4 HOH 49 668 61 HOH HOH A . E 4 HOH 50 669 63 HOH HOH A . E 4 HOH 51 670 64 HOH HOH A . E 4 HOH 52 671 65 HOH HOH A . E 4 HOH 53 672 66 HOH HOH A . E 4 HOH 54 673 67 HOH HOH A . E 4 HOH 55 674 68 HOH HOH A . E 4 HOH 56 675 69 HOH HOH A . E 4 HOH 57 676 70 HOH HOH A . E 4 HOH 58 677 71 HOH HOH A . E 4 HOH 59 678 72 HOH HOH A . E 4 HOH 60 679 73 HOH HOH A . E 4 HOH 61 680 74 HOH HOH A . E 4 HOH 62 681 75 HOH HOH A . E 4 HOH 63 682 76 HOH HOH A . E 4 HOH 64 683 77 HOH HOH A . E 4 HOH 65 684 78 HOH HOH A . E 4 HOH 66 685 79 HOH HOH A . E 4 HOH 67 686 80 HOH HOH A . E 4 HOH 68 687 81 HOH HOH A . E 4 HOH 69 688 82 HOH HOH A . E 4 HOH 70 689 83 HOH HOH A . E 4 HOH 71 690 84 HOH HOH A . E 4 HOH 72 691 85 HOH HOH A . E 4 HOH 73 692 86 HOH HOH A . E 4 HOH 74 693 87 HOH HOH A . E 4 HOH 75 694 88 HOH HOH A . E 4 HOH 76 695 89 HOH HOH A . E 4 HOH 77 696 90 HOH HOH A . E 4 HOH 78 697 91 HOH HOH A . E 4 HOH 79 698 92 HOH HOH A . E 4 HOH 80 699 3 HOH HOH A . E 4 HOH 81 700 5 HOH HOH A . E 4 HOH 82 701 6 HOH HOH A . E 4 HOH 83 702 7 HOH HOH A . E 4 HOH 84 703 9 HOH HOH A . E 4 HOH 85 704 10 HOH HOH A . E 4 HOH 86 705 15 HOH HOH A . E 4 HOH 87 706 16 HOH HOH A . E 4 HOH 88 707 17 HOH HOH A . E 4 HOH 89 708 19 HOH HOH A . E 4 HOH 90 709 20 HOH HOH A . E 4 HOH 91 710 21 HOH HOH A . E 4 HOH 92 711 23 HOH HOH A . E 4 HOH 93 712 24 HOH HOH A . E 4 HOH 94 713 27 HOH HOH A . E 4 HOH 95 714 28 HOH HOH A . E 4 HOH 96 715 29 HOH HOH A . E 4 HOH 97 716 30 HOH HOH A . E 4 HOH 98 717 32 HOH HOH A . E 4 HOH 99 718 33 HOH HOH A . E 4 HOH 100 719 34 HOH HOH A . E 4 HOH 101 720 35 HOH HOH A . E 4 HOH 102 721 36 HOH HOH A . E 4 HOH 103 722 37 HOH HOH A . E 4 HOH 104 723 38 HOH HOH A . E 4 HOH 105 724 39 HOH HOH A . E 4 HOH 106 725 40 HOH HOH A . E 4 HOH 107 726 41 HOH HOH A . E 4 HOH 108 727 42 HOH HOH A . E 4 HOH 109 728 43 HOH HOH A . E 4 HOH 110 729 44 HOH HOH A . E 4 HOH 111 730 45 HOH HOH A . E 4 HOH 112 731 47 HOH HOH A . E 4 HOH 113 732 48 HOH HOH A . E 4 HOH 114 733 2 HOH HOH A . E 4 HOH 115 734 4 HOH HOH A . E 4 HOH 116 735 6 HOH HOH A . E 4 HOH 117 736 7 HOH HOH A . E 4 HOH 118 737 8 HOH HOH A . E 4 HOH 119 738 9 HOH HOH A . E 4 HOH 120 739 10 HOH HOH A . E 4 HOH 121 740 11 HOH HOH A . E 4 HOH 122 741 13 HOH HOH A . E 4 HOH 123 742 15 HOH HOH A . E 4 HOH 124 743 16 HOH HOH A . E 4 HOH 125 744 17 HOH HOH A . E 4 HOH 126 745 18 HOH HOH A . E 4 HOH 127 746 20 HOH HOH A . E 4 HOH 128 747 21 HOH HOH A . E 4 HOH 129 748 22 HOH HOH A . E 4 HOH 130 749 23 HOH HOH A . E 4 HOH 131 750 25 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 467 ? CG ? A GLU 58 CG 2 1 Y 1 A GLU 467 ? CD ? A GLU 58 CD 3 1 Y 1 A GLU 467 ? OE1 ? A GLU 58 OE1 4 1 Y 1 A GLU 467 ? OE2 ? A GLU 58 OE2 5 1 Y 1 A LYS 568 ? CD ? A LYS 159 CD 6 1 Y 1 A LYS 568 ? CE ? A LYS 159 CE 7 1 Y 1 A LYS 568 ? NZ ? A LYS 159 NZ 8 1 Y 1 A LYS 595 ? CE ? A LYS 186 CE 9 1 Y 1 A LYS 595 ? NZ ? A LYS 186 NZ 10 1 Y 1 A LYS 599 ? CD ? A LYS 190 CD 11 1 Y 1 A LYS 599 ? CE ? A LYS 190 CE 12 1 Y 1 A LYS 599 ? NZ ? A LYS 190 NZ 13 1 Y 1 A LYS 600 ? CD ? A LYS 191 CD 14 1 Y 1 A LYS 600 ? CE ? A LYS 191 CE 15 1 Y 1 A LYS 600 ? NZ ? A LYS 191 NZ 16 1 Y 1 A ALA 614 ? CB ? A ALA 205 CB # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 MOLREP phasing . ? 5 # _cell.entry_id 3DWH _cell.length_a 65.557 _cell.length_b 65.557 _cell.length_c 95.362 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DWH _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DWH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_percent_sol 51.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;100mM Tris-Hcl 1.2M ammonium Sulfate 0.2M NaCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'MAR CCD 165 mm' 2008-06-27 ? 2 CCD 'ADSC QUANTUM 210' 2008-06-18 ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'NSLS BEAMLINE X4C' NSLS X4C ? ? 2 SYNCHROTRON 'NSLS BEAMLINE X6A' NSLS X6A ? ? # _reflns.entry_id 3DWH _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 20 _reflns.number_all ? _reflns.number_obs 17595 _reflns.percent_possible_obs 79 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DWH _refine.ls_number_reflns_obs 16701 _refine.ls_number_reflns_all 17830 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 98.82 _refine.ls_R_factor_obs 0.199 _refine.ls_R_factor_all 0.20126 _refine.ls_R_factor_R_work 0.19859 _refine.ls_R_factor_R_free 0.25267 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 894 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 19.747 _refine.aniso_B[1][1] 0.32 _refine.aniso_B[2][2] 0.32 _refine.aniso_B[3][3] -0.47 _refine.aniso_B[1][2] 0.16 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.161 _refine.pdbx_overall_ESU_R_Free 0.159 _refine.overall_SU_ML 0.102 _refine.overall_SU_B 3.474 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1500 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1647 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.021 ? 1568 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.608 1.948 ? 2125 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.424 5.000 ? 195 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.986 23.026 ? 76 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.487 15.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.908 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.116 0.200 ? 207 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1238 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.227 0.200 ? 684 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 1051 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.146 0.200 ? 118 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.243 0.200 ? 41 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.134 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.151 1.500 ? 978 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.864 2.000 ? 1521 'X-RAY DIFFRACTION' ? r_scbond_it 2.597 3.000 ? 690 'X-RAY DIFFRACTION' ? r_scangle_it 3.952 4.500 ? 602 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.000 _refine_ls_shell.number_reflns_R_work 1219 _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.percent_reflns_obs 98.78 _refine_ls_shell.R_factor_R_free 0.270 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3DWH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3DWH _struct.title 'Structural and Functional Analysis of SRA domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DWH _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;Beta Barrel, Cell cycle, DNA damage, DNA repair, DNA-binding, Ligase, Metal-binding, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Ubl conjugation pathway, Zinc-finger ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UHRF1_HUMAN _struct_ref.pdbx_db_accession Q96T88 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTA EQSCDQKLTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGF LVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALAN ; _struct_ref.pdbx_align_begin 414 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DWH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 208 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96T88 _struct_ref_seq.db_align_beg 414 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 617 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 414 _struct_ref_seq.pdbx_auth_seq_align_end 617 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DWH GLY A 1 ? UNP Q96T88 ? ? 'expression tag' 410 1 1 3DWH SER A 2 ? UNP Q96T88 ? ? 'expression tag' 411 2 1 3DWH HIS A 3 ? UNP Q96T88 ? ? 'expression tag' 412 3 1 3DWH MET A 4 ? UNP Q96T88 ? ? 'expression tag' 413 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 23 ? SER A 30 ? PHE A 432 SER A 439 1 ? 8 HELX_P HELX_P2 2 THR A 93 ? CYS A 103 ? THR A 502 CYS A 512 1 ? 11 HELX_P HELX_P3 3 ASP A 117 ? GLY A 121 ? ASP A 526 GLY A 530 5 ? 5 HELX_P HELX_P4 4 LYS A 131 ? SER A 136 ? LYS A 540 SER A 545 5 ? 6 HELX_P HELX_P5 5 THR A 182 ? GLY A 193 ? THR A 591 GLY A 602 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 203 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 612 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLU _struct_mon_prot_cis.pdbx_label_seq_id_2 204 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLU _struct_mon_prot_cis.pdbx_auth_seq_id_2 613 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 16.87 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 20 ? TRP A 21 ? MET A 429 TRP A 430 A 2 ASN A 144 ? LYS A 159 ? ASN A 553 LYS A 568 A 3 LEU A 165 ? ARG A 173 ? LEU A 574 ARG A 582 A 4 PHE A 66 ? THR A 70 ? PHE A 475 THR A 479 B 1 ILE A 40 ? ARG A 43 ? ILE A 449 ARG A 452 B 2 GLY A 47 ? LEU A 53 ? GLY A 456 LEU A 462 B 3 VAL A 124 ? ASN A 129 ? VAL A 533 ASN A 538 B 4 ASN A 144 ? LYS A 159 ? ASN A 553 LYS A 568 B 5 ALA A 113 ? GLU A 114 ? ALA A 522 GLU A 523 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 21 ? N TRP A 430 O ASN A 144 ? O ASN A 553 A 2 3 N GLU A 158 ? N GLU A 567 O VAL A 166 ? O VAL A 575 A 3 4 O LEU A 171 ? O LEU A 580 N PHE A 67 ? N PHE A 476 B 1 2 N HIS A 41 ? N HIS A 450 O TYR A 49 ? O TYR A 458 B 2 3 N LEU A 53 ? N LEU A 462 O ASN A 129 ? O ASN A 538 B 3 4 N VAL A 126 ? N VAL A 535 O ASP A 147 ? O ASP A 556 B 4 5 O TYR A 155 ? O TYR A 564 N ALA A 113 ? N ALA A 522 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 1 ? 5 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software A SO4 618 ? 6 'BINDING SITE FOR RESIDUE SO4 A 618' AC3 Software A GOL 619 ? 4 'BINDING SITE FOR RESIDUE GOL A 619' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 22 ? ARG A 431 . ? 1_555 ? 2 AC1 5 PHE A 23 ? PHE A 432 . ? 1_555 ? 3 AC1 5 TRP A 118 ? TRP A 527 . ? 3_454 ? 4 AC1 5 ARG A 119 ? ARG A 528 . ? 3_454 ? 5 AC1 5 ARG A 172 ? ARG A 581 . ? 3_454 ? 6 AC2 6 HIS A 3 ? HIS A 412 . ? 1_555 ? 7 AC2 6 SER A 6 ? SER A 415 . ? 1_555 ? 8 AC2 6 ASN A 7 ? ASN A 416 . ? 1_555 ? 9 AC2 6 ARG A 34 ? ARG A 443 . ? 1_555 ? 10 AC2 6 LYS A 183 ? LYS A 592 . ? 3_454 ? 11 AC2 6 HOH E . ? HOH A 695 . ? 3_454 ? 12 AC3 4 PHE A 23 ? PHE A 432 . ? 1_555 ? 13 AC3 4 ARG A 24 ? ARG A 433 . ? 1_555 ? 14 AC3 4 ARG A 119 ? ARG A 528 . ? 3_454 ? 15 AC3 4 HOH E . ? HOH A 701 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 474 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 687 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 416 ? ? -76.29 23.19 2 1 ASP A 455 ? ? -137.22 -69.19 3 1 ALA A 463 ? ? -141.27 37.51 4 1 TYR A 466 ? ? 57.73 101.42 5 1 ASN A 503 ? ? 53.07 -129.14 6 1 ASP A 526 ? ? -104.11 61.46 7 1 ASP A 583 ? ? -151.63 80.92 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 484 ? A ARG 75 2 1 Y 1 A ASP 485 ? A ASP 76 3 1 Y 1 A LEU 486 ? A LEU 77 4 1 Y 1 A SER 487 ? A SER 78 5 1 Y 1 A GLY 488 ? A GLY 79 6 1 Y 1 A ASN 489 ? A ASN 80 7 1 Y 1 A LYS 490 ? A LYS 81 8 1 Y 1 A ARG 491 ? A ARG 82 9 1 Y 1 A THR 492 ? A THR 83 10 1 Y 1 A ALA 493 ? A ALA 84 11 1 Y 1 A GLU 494 ? A GLU 85 12 1 Y 1 A GLN 495 ? A GLN 86 13 1 Y 1 A LEU 615 ? A LEU 206 14 1 Y 1 A ALA 616 ? A ALA 207 15 1 Y 1 A ASN 617 ? A ASN 208 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 SO4 S S N N 318 SO4 O1 O N N 319 SO4 O2 O N N 320 SO4 O3 O N N 321 SO4 O4 O N N 322 THR N N N N 323 THR CA C N S 324 THR C C N N 325 THR O O N N 326 THR CB C N R 327 THR OG1 O N N 328 THR CG2 C N N 329 THR OXT O N N 330 THR H H N N 331 THR H2 H N N 332 THR HA H N N 333 THR HB H N N 334 THR HG1 H N N 335 THR HG21 H N N 336 THR HG22 H N N 337 THR HG23 H N N 338 THR HXT H N N 339 TRP N N N N 340 TRP CA C N S 341 TRP C C N N 342 TRP O O N N 343 TRP CB C N N 344 TRP CG C Y N 345 TRP CD1 C Y N 346 TRP CD2 C Y N 347 TRP NE1 N Y N 348 TRP CE2 C Y N 349 TRP CE3 C Y N 350 TRP CZ2 C Y N 351 TRP CZ3 C Y N 352 TRP CH2 C Y N 353 TRP OXT O N N 354 TRP H H N N 355 TRP H2 H N N 356 TRP HA H N N 357 TRP HB2 H N N 358 TRP HB3 H N N 359 TRP HD1 H N N 360 TRP HE1 H N N 361 TRP HE3 H N N 362 TRP HZ2 H N N 363 TRP HZ3 H N N 364 TRP HH2 H N N 365 TRP HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 VAL N N N N 391 VAL CA C N S 392 VAL C C N N 393 VAL O O N N 394 VAL CB C N N 395 VAL CG1 C N N 396 VAL CG2 C N N 397 VAL OXT O N N 398 VAL H H N N 399 VAL H2 H N N 400 VAL HA H N N 401 VAL HB H N N 402 VAL HG11 H N N 403 VAL HG12 H N N 404 VAL HG13 H N N 405 VAL HG21 H N N 406 VAL HG22 H N N 407 VAL HG23 H N N 408 VAL HXT H N N 409 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 SO4 S O1 doub N N 303 SO4 S O2 doub N N 304 SO4 S O3 sing N N 305 SO4 S O4 sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # _atom_sites.entry_id 3DWH _atom_sites.fract_transf_matrix[1][1] 0.015254 _atom_sites.fract_transf_matrix[1][2] 0.008807 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017614 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010486 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_