HEADER LYASE 23-JUL-08 3DX5 TITLE CRYSTAL STRUCTURE OF THE PROBABLE 3-DHS DEHYDRATASE ASBF INVOLVED IN TITLE 2 THE PETROBACTIN SYNTHESIS FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ASBF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 1392; SOURCE 5 STRAIN: STERNE; SOURCE 6 GENE: BAS1843, BA_1986, GBAA1986; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG26 KEYWDS BETA-ALPHA BARREL, PETROBACTIN SYNTHESIS, ASB LOCUS, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,L.STOLS,W.ESCHENFELDT,B.F.PFLEGER,D.H.SHERMAN, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 13-JUL-11 3DX5 1 VERSN REVDAT 4 09-JUN-09 3DX5 1 REVDAT REVDAT 3 24-FEB-09 3DX5 1 VERSN REVDAT 2 27-JAN-09 3DX5 1 JRNL REVDAT 1 02-SEP-08 3DX5 0 JRNL AUTH B.F.PFLEGER,Y.KIM,T.D.NUSCA,N.MALTSEVA,J.Y.LEE,C.M.RATH, JRNL AUTH 2 J.B.SCAGLIONE,B.K.JANES,E.C.ANDERSON,N.H.BERGMAN,P.C.HANNA, JRNL AUTH 3 A.JOACHIMIAK,D.H.SHERMAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF ASBF: ORIGIN OF THE JRNL TITL 2 STEALTH 3,4-DIHYDROXYBENZOIC ACID SUBUNIT FOR PETROBACTIN JRNL TITL 3 BIOSYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 17133 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18955706 JRNL DOI 10.1073/PNAS.0808118105 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1151 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.044 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2587 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3531 ; 1.468 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 5.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;41.369 ;25.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;14.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;24.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2054 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 0.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2498 ; 1.412 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1057 ; 2.511 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1033 ; 4.023 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 65.6262 70.4113 2.1516 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.0299 REMARK 3 T33: 0.0228 T12: -0.0096 REMARK 3 T13: 0.0176 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.7774 L22: 0.8213 REMARK 3 L33: 1.4143 L12: -0.0827 REMARK 3 L13: 0.0616 L23: 0.1661 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0356 S13: 0.0189 REMARK 3 S21: -0.0669 S22: -0.0041 S23: 0.0357 REMARK 3 S31: 0.0663 S32: -0.0232 S33: 0.0185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB048599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.900 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXD, RESOLVE, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 3.2 M SOUDIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.53733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.26867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.40300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.13433 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.67167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.53733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 24.26867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 12.13433 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.40300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.67167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 134.48300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.40300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 299 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 387 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 275 REMARK 465 GLU A 276 REMARK 465 VAL A 277 REMARK 465 VAL A 278 REMARK 465 THR A 279 REMARK 465 SER A 280 REMARK 465 GLU A 281 REMARK 465 ASN A 282 REMARK 465 LEU A 283 REMARK 465 TYR A 284 REMARK 465 PHE A 285 REMARK 465 GLN A 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 274 CG OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 ILE A 73 OH TYR A 121 2.18 REMARK 500 CD1 ILE A 73 CZ TYR A 121 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 6 CB CYS A 6 SG -0.116 REMARK 500 CYS A 56 CB CYS A 56 SG -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 73 CG1 - CB - CG2 ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 66 150.56 179.65 REMARK 500 ASP A 69 -154.74 -138.67 REMARK 500 THR A 149 30.55 -98.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 287 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 142 OE2 REMARK 620 2 ASP A 172 OD2 100.0 REMARK 620 3 GLU A 253 OE1 173.7 85.9 REMARK 620 4 GLU A 253 OE2 118.4 141.7 55.8 REMARK 620 5 DHB A 289 O3 94.1 88.9 88.2 87.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHB A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 291 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC65718 RELATED DB: TARGETDB DBREF 3DX5 A 1 280 UNP Q81RQ4 Q81RQ4_BACAN 1 280 SEQADV 3DX5 GLU A 281 UNP Q81RQ4 EXPRESSION TAG SEQADV 3DX5 ASN A 282 UNP Q81RQ4 EXPRESSION TAG SEQADV 3DX5 LEU A 283 UNP Q81RQ4 EXPRESSION TAG SEQADV 3DX5 TYR A 284 UNP Q81RQ4 EXPRESSION TAG SEQADV 3DX5 PHE A 285 UNP Q81RQ4 EXPRESSION TAG SEQADV 3DX5 GLN A 286 UNP Q81RQ4 EXPRESSION TAG SEQRES 1 A 286 MSE LYS TYR SER LEU CYS THR ILE SER PHE ARG HIS GLN SEQRES 2 A 286 LEU ILE SER PHE THR ASP ILE VAL GLN PHE ALA TYR GLU SEQRES 3 A 286 ASN GLY PHE GLU GLY ILE GLU LEU TRP GLY THR HIS ALA SEQRES 4 A 286 GLN ASN LEU TYR MSE GLN GLU TYR GLU THR THR GLU ARG SEQRES 5 A 286 GLU LEU ASN CYS LEU LYS ASP LYS THR LEU GLU ILE THR SEQRES 6 A 286 MSE ILE SER ASP TYR LEU ASP ILE SER LEU SER ALA ASP SEQRES 7 A 286 PHE GLU LYS THR ILE GLU LYS CYS GLU GLN LEU ALA ILE SEQRES 8 A 286 LEU ALA ASN TRP PHE LYS THR ASN LYS ILE ARG THR PHE SEQRES 9 A 286 ALA GLY GLN LYS GLY SER ALA ASP PHE SER GLN GLN GLU SEQRES 10 A 286 ARG GLN GLU TYR VAL ASN ARG ILE ARG MSE ILE CYS GLU SEQRES 11 A 286 LEU PHE ALA GLN HIS ASN MSE TYR VAL LEU LEU GLU THR SEQRES 12 A 286 HIS PRO ASN THR LEU THR ASP THR LEU PRO SER THR LEU SEQRES 13 A 286 GLU LEU LEU GLY GLU VAL ASP HIS PRO ASN LEU LYS ILE SEQRES 14 A 286 ASN LEU ASP PHE LEU HIS ILE TRP GLU SER GLY ALA ASP SEQRES 15 A 286 PRO VAL ASP SER PHE GLN GLN LEU ARG PRO TRP ILE GLN SEQRES 16 A 286 HIS TYR HIS PHE LYS ASN ILE SER SER ALA ASP TYR LEU SEQRES 17 A 286 HIS VAL PHE GLU PRO ASN ASN VAL TYR ALA ALA ALA GLY SEQRES 18 A 286 ASN ARG THR GLY MSE VAL PRO LEU PHE GLU GLY ILE VAL SEQRES 19 A 286 ASN TYR ASP GLU ILE ILE GLN GLU VAL ARG ASP THR ASP SEQRES 20 A 286 HIS PHE ALA SER LEU GLU TRP PHE GLY HIS ASN ALA LYS SEQRES 21 A 286 ASP ILE LEU LYS ALA GLU MSE LYS VAL LEU THR ASN ARG SEQRES 22 A 286 ASN LEU GLU VAL VAL THR SER GLU ASN LEU TYR PHE GLN MODRES 3DX5 MSE A 1 MET SELENOMETHIONINE MODRES 3DX5 MSE A 44 MET SELENOMETHIONINE MODRES 3DX5 MSE A 66 MET SELENOMETHIONINE MODRES 3DX5 MSE A 127 MET SELENOMETHIONINE MODRES 3DX5 MSE A 137 MET SELENOMETHIONINE MODRES 3DX5 MSE A 226 MET SELENOMETHIONINE MODRES 3DX5 MSE A 267 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 44 16 HET MSE A 66 8 HET MSE A 127 8 HET MSE A 137 16 HET MSE A 226 8 HET MSE A 267 8 HET MN A 287 1 HET CL A 288 1 HET DHB A 289 11 HET TRS A 290 16 HET GOL A 291 6 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM DHB 3,4-DIHYDROXYBENZOIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MN MN 2+ FORMUL 3 CL CL 1- FORMUL 4 DHB C7 H6 O4 FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *231(H2 O) HELIX 1 1 ILE A 8 ARG A 11 5 4 HELIX 2 2 SER A 16 ASN A 27 1 12 HELIX 3 3 GLY A 36 GLU A 46 1 11 HELIX 4 4 GLU A 46 LEU A 57 1 12 HELIX 5 5 LYS A 58 THR A 61 5 4 HELIX 6 6 ASP A 78 LYS A 97 1 20 HELIX 7 7 GLY A 109 PHE A 113 5 5 HELIX 8 8 SER A 114 HIS A 135 1 22 HELIX 9 9 THR A 151 ASP A 163 1 13 HELIX 10 10 PHE A 173 SER A 179 1 7 HELIX 11 11 ASP A 182 ARG A 191 1 10 HELIX 12 12 SER A 204 PHE A 211 5 8 HELIX 13 13 GLU A 212 ALA A 218 1 7 HELIX 14 14 PRO A 228 GLY A 232 5 5 HELIX 15 15 ASN A 235 ARG A 244 1 10 HELIX 16 16 ASN A 258 ARG A 273 1 16 SHEET 1 A 9 LYS A 2 CYS A 6 0 SHEET 2 A 9 GLY A 31 TRP A 35 1 O GLU A 33 N LEU A 5 SHEET 3 A 9 ILE A 64 SER A 68 1 O THR A 65 N ILE A 32 SHEET 4 A 9 LYS A 100 THR A 103 1 O ARG A 102 N ILE A 67 SHEET 5 A 9 TYR A 138 GLU A 142 1 O LEU A 140 N ILE A 101 SHEET 6 A 9 LEU A 167 ASP A 172 1 O LYS A 168 N VAL A 139 SHEET 7 A 9 ILE A 194 PHE A 199 1 O GLN A 195 N ILE A 169 SHEET 8 A 9 PHE A 249 LEU A 252 1 O SER A 251 N PHE A 199 SHEET 9 A 9 LYS A 2 CYS A 6 1 N LYS A 2 O ALA A 250 SHEET 1 B 2 ASN A 201 ILE A 202 0 SHEET 2 B 2 MSE A 226 VAL A 227 -1 O VAL A 227 N ASN A 201 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C TYR A 43 N AMSE A 44 1555 1555 1.33 LINK C TYR A 43 N BMSE A 44 1555 1555 1.33 LINK C AMSE A 44 N AGLN A 45 1555 1555 1.33 LINK C BMSE A 44 N BGLN A 45 1555 1555 1.33 LINK C THR A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N ILE A 67 1555 1555 1.33 LINK C ARG A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N ILE A 128 1555 1555 1.33 LINK C AASN A 136 N AMSE A 137 1555 1555 1.32 LINK C BASN A 136 N BMSE A 137 1555 1555 1.33 LINK C AMSE A 137 N TYR A 138 1555 1555 1.33 LINK C BMSE A 137 N TYR A 138 1555 1555 1.33 LINK C GLY A 225 N MSE A 226 1555 1555 1.34 LINK C MSE A 226 N VAL A 227 1555 1555 1.33 LINK C AGLU A 266 N MSE A 267 1555 1555 1.32 LINK C BGLU A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N LYS A 268 1555 1555 1.34 LINK OE2 GLU A 142 MN MN A 287 1555 1555 2.08 LINK OD2 ASP A 172 MN MN A 287 1555 1555 2.14 LINK OE1 GLU A 253 MN MN A 287 1555 1555 2.35 LINK OE2 GLU A 253 MN MN A 287 1555 1555 2.38 LINK MN MN A 287 O3 DHB A 289 1555 1555 2.14 SITE 1 AC1 5 GLU A 142 ASP A 172 HIS A 198 LYS A 200 SITE 2 AC1 5 GLU A 253 SITE 1 AC2 6 GLN A 45 GLU A 46 TYR A 47 LYS A 264 SITE 2 AC2 6 LYS A 268 HOH A 464 SITE 1 AC3 13 ILE A 8 TYR A 70 ARG A 102 GLU A 142 SITE 2 AC3 13 HIS A 144 ASP A 172 HIS A 175 LYS A 200 SITE 3 AC3 13 PHE A 211 TYR A 217 GLU A 253 PHE A 255 SITE 4 AC3 13 HOH A 370 SITE 1 AC4 7 SER A 110 PHE A 113 ARG A 118 HOH A 399 SITE 2 AC4 7 HOH A 511 HOH A 512 HOH A 518 SITE 1 AC5 5 LEU A 54 TRP A 95 LYS A 97 HOH A 357 SITE 2 AC5 5 HOH A 364 CRYST1 134.483 134.483 72.806 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007436 0.004293 0.000000 0.00000 SCALE2 0.000000 0.008586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013735 0.00000 HETATM 1 N MSE A 1 74.802 80.029 -10.123 1.00 26.76 N HETATM 2 CA MSE A 1 73.507 79.557 -9.572 1.00 25.17 C HETATM 3 C MSE A 1 73.072 80.303 -8.297 1.00 23.80 C HETATM 4 O MSE A 1 73.746 81.237 -7.850 1.00 24.48 O HETATM 5 CB MSE A 1 73.553 78.041 -9.351 1.00 26.25 C HETATM 6 CG MSE A 1 74.751 77.531 -8.584 1.00 25.82 C HETATM 7 SE MSE A 1 74.277 75.715 -8.176 0.65 23.83 SE HETATM 8 CE MSE A 1 72.328 75.908 -8.152 1.00 25.92 C