HEADER TRANSFERASE 24-JUL-08 3DXQ TITLE CRYSTAL STRUCTURE OF CHOLINE/ETHANOLAMINE KINASE FAMILY PROTEIN TITLE 2 (NP_106042.1) FROM MESORHIZOBIUM LOTI AT 2.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE/ETHANOLAMINE KINASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_COMMON: MESORHIZOBIUM LOTI; SOURCE 4 ORGANISM_TAXID: 381; SOURCE 5 GENE: NP_106042.1, MLL5367; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_106042.1, CHOLINE/ETHANOLAMINE KINASE FAMILY PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, PHOSPHOTRANSFERASE ENZYME FAMILY, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3DXQ 1 SEQADV REVDAT 5 24-JUL-19 3DXQ 1 REMARK LINK REVDAT 4 25-OCT-17 3DXQ 1 REMARK REVDAT 3 13-JUL-11 3DXQ 1 VERSN REVDAT 2 24-FEB-09 3DXQ 1 VERSN REVDAT 1 05-AUG-08 3DXQ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CHOLINE/ETHANOLAMINE KINASE FAMILY JRNL TITL 2 PROTEIN (NP_106042.1) FROM MESORHIZOBIUM LOTI AT 2.55 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 23862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 61.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.99000 REMARK 3 B22 (A**2) : -2.99000 REMARK 3 B33 (A**2) : -2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.609 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4573 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3123 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6206 ; 1.345 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7530 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 3.885 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;30.183 ;22.634 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;14.471 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;14.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5216 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 993 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1091 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3131 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2323 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2370 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.284 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2985 ; 1.490 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1189 ; 0.325 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4612 ; 2.378 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1814 ; 4.163 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1592 ; 5.501 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 17 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 2 3 REMARK 3 1 B 1 B 2 3 REMARK 3 2 A 3 A 11 1 REMARK 3 2 B 3 B 11 1 REMARK 3 3 A 12 A 16 4 REMARK 3 3 B 12 B 16 4 REMARK 3 4 A 19 A 24 4 REMARK 3 4 B 19 B 24 4 REMARK 3 5 A 36 A 42 1 REMARK 3 5 B 36 B 42 1 REMARK 3 6 A 52 A 74 1 REMARK 3 6 B 52 B 74 1 REMARK 3 7 A 83 A 87 3 REMARK 3 7 B 83 B 87 3 REMARK 3 8 A 88 A 125 1 REMARK 3 8 B 88 B 125 1 REMARK 3 9 A 126 A 126 2 REMARK 3 9 B 126 B 126 2 REMARK 3 10 A 127 A 137 1 REMARK 3 10 B 127 B 137 1 REMARK 3 11 A 149 A 194 1 REMARK 3 11 B 149 B 194 1 REMARK 3 12 A 195 A 195 2 REMARK 3 12 B 195 B 195 2 REMARK 3 13 A 196 A 258 1 REMARK 3 13 B 196 B 258 1 REMARK 3 14 A 259 A 259 2 REMARK 3 14 B 259 B 259 2 REMARK 3 15 A 260 A 264 1 REMARK 3 15 B 260 B 264 1 REMARK 3 16 A 265 A 272 4 REMARK 3 16 B 265 B 272 4 REMARK 3 17 A 273 A 300 1 REMARK 3 17 B 273 B 300 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3008 ; 0.040 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 262 ; 0.400 ; 0.250 REMARK 3 LOOSE POSITIONAL 1 A (A): 50 ; 0.360 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 3008 ; 0.320 ; 1.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 262 ; 0.930 ; 3.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 50 ; 4.510 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6167 104.2140 42.0293 REMARK 3 T TENSOR REMARK 3 T11: -0.0854 T22: 0.0069 REMARK 3 T33: 0.0177 T12: 0.0200 REMARK 3 T13: -0.0794 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.3438 L22: 2.3377 REMARK 3 L33: 0.9147 L12: 0.5968 REMARK 3 L13: 0.1425 L23: 0.7804 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.0777 S13: 0.2144 REMARK 3 S21: 0.1359 S22: -0.1506 S23: 0.4617 REMARK 3 S31: -0.1895 S32: -0.2829 S33: 0.1036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7818 63.9747 38.0449 REMARK 3 T TENSOR REMARK 3 T11: -0.0103 T22: -0.0786 REMARK 3 T33: -0.1342 T12: -0.0708 REMARK 3 T13: -0.0651 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 1.6254 L22: 1.0706 REMARK 3 L33: 0.1411 L12: 0.0925 REMARK 3 L13: -0.0029 L23: 0.3835 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.0347 S13: -0.0487 REMARK 3 S21: 0.0084 S22: -0.1168 S23: 0.0213 REMARK 3 S31: 0.1974 S32: -0.0985 S33: 0.0884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 3DXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97882,0.97949,0.91837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.566 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NANO3, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 86.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 GLU A 50 REMARK 465 THR A 142 REMARK 465 LYS A 143 REMARK 465 GLY B 0 REMARK 465 GLY B 45 REMARK 465 LYS B 46 REMARK 465 GLY B 47 REMARK 465 THR B 48 REMARK 465 GLU B 49 REMARK 465 GLU B 50 REMARK 465 TYR B 51 REMARK 465 ILE B 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 MSE A 2 CG SE CE REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ILE A 52 CG1 CG2 CD1 REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 ASN A 144 CG OD1 ND2 REMARK 470 VAL A 145 CG1 CG2 REMARK 470 LEU A 261 CG CD1 CD2 REMARK 470 VAL A 267 CG1 CG2 REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 MSE B 1 CG SE CE REMARK 470 MSE B 2 CG SE CE REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 THR B 30 OG1 CG2 REMARK 470 ASN B 31 CG OD1 ND2 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 54 NE CZ NH1 NH2 REMARK 470 LYS B 66 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 177 -20.45 77.74 REMARK 500 THR A 187 -156.33 -82.22 REMARK 500 ASP A 195 77.53 69.63 REMARK 500 ASP A 268 -175.57 -176.66 REMARK 500 THR B 30 -79.58 -74.26 REMARK 500 ASN B 31 -168.03 -79.35 REMARK 500 CYS B 177 -20.42 77.92 REMARK 500 THR B 187 -156.10 -78.54 REMARK 500 ASP B 195 76.70 67.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 386994 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3DXQ A 1 300 UNP Q98BZ3 Q98BZ3_RHILO 1 300 DBREF 3DXQ B 1 300 UNP Q98BZ3 Q98BZ3_RHILO 1 300 SEQADV 3DXQ GLY A 0 UNP Q98BZ3 EXPRESSION TAG SEQADV 3DXQ GLY B 0 UNP Q98BZ3 EXPRESSION TAG SEQRES 1 A 301 GLY MSE MSE THR ASP GLU ALA ARG ALA LYS LEU ALA ALA SEQRES 2 A 301 ILE PRO MSE LEU ALA GLY TYR THR GLY PRO LEU GLU ARG SEQRES 3 A 301 LEU GLY GLY LEU THR ASN LEU VAL PHE ARG ALA GLY ASP SEQRES 4 A 301 LEU CYS LEU ARG ILE PRO GLY LYS GLY THR GLU GLU TYR SEQRES 5 A 301 ILE ASN ARG ALA ASN GLU ALA VAL ALA ALA ARG GLU ALA SEQRES 6 A 301 ALA LYS ALA GLY VAL SER PRO GLU VAL LEU HIS VAL ASP SEQRES 7 A 301 PRO ALA THR GLY VAL MSE VAL THR ARG TYR ILE ALA GLY SEQRES 8 A 301 ALA GLN THR MSE SER PRO GLU LYS PHE LYS THR ARG PRO SEQRES 9 A 301 GLY SER PRO ALA ARG ALA GLY GLU ALA PHE ARG LYS LEU SEQRES 10 A 301 HIS GLY SER GLY ALA VAL PHE PRO PHE ARG PHE GLU LEU SEQRES 11 A 301 PHE ALA MSE ILE ASP ASP TYR LEU LYS VAL LEU SER THR SEQRES 12 A 301 LYS ASN VAL THR LEU PRO ALA GLY TYR HIS ASP VAL VAL SEQRES 13 A 301 ARG GLU ALA GLY GLY VAL ARG SER ALA LEU ALA ALA HIS SEQRES 14 A 301 PRO LEU PRO LEU ALA ALA CYS HIS CYS ASP PRO LEU CYS SEQRES 15 A 301 GLU ASN PHE LEU ASP THR GLY GLU ARG MSE TRP ILE VAL SEQRES 16 A 301 ASP TRP GLU TYR SER GLY MSE ASN ASP PRO LEU TRP ASP SEQRES 17 A 301 LEU GLY ASP LEU SER VAL GLU GLY LYS PHE ASN ALA ASN SEQRES 18 A 301 GLN ASP GLU GLU LEU MSE ARG ALA TYR PHE GLY GLY GLU SEQRES 19 A 301 ALA ARG PRO ALA GLU ARG GLY ARG VAL VAL ILE TYR LYS SEQRES 20 A 301 ALA MSE CYS ASP LEU LEU TRP THR LEU TRP GLY LEU ILE SEQRES 21 A 301 GLN LEU ALA ASN ASP ASN PRO VAL ASP ASP PHE ARG ALA SEQRES 22 A 301 TYR ALA ASP GLY ARG PHE ALA ARG CYS LYS ALA LEU MSE SEQRES 23 A 301 GLU THR PRO GLU PHE SER ARG HIS LEU ALA ALA VAL ARG SEQRES 24 A 301 MSE GLY SEQRES 1 B 301 GLY MSE MSE THR ASP GLU ALA ARG ALA LYS LEU ALA ALA SEQRES 2 B 301 ILE PRO MSE LEU ALA GLY TYR THR GLY PRO LEU GLU ARG SEQRES 3 B 301 LEU GLY GLY LEU THR ASN LEU VAL PHE ARG ALA GLY ASP SEQRES 4 B 301 LEU CYS LEU ARG ILE PRO GLY LYS GLY THR GLU GLU TYR SEQRES 5 B 301 ILE ASN ARG ALA ASN GLU ALA VAL ALA ALA ARG GLU ALA SEQRES 6 B 301 ALA LYS ALA GLY VAL SER PRO GLU VAL LEU HIS VAL ASP SEQRES 7 B 301 PRO ALA THR GLY VAL MSE VAL THR ARG TYR ILE ALA GLY SEQRES 8 B 301 ALA GLN THR MSE SER PRO GLU LYS PHE LYS THR ARG PRO SEQRES 9 B 301 GLY SER PRO ALA ARG ALA GLY GLU ALA PHE ARG LYS LEU SEQRES 10 B 301 HIS GLY SER GLY ALA VAL PHE PRO PHE ARG PHE GLU LEU SEQRES 11 B 301 PHE ALA MSE ILE ASP ASP TYR LEU LYS VAL LEU SER THR SEQRES 12 B 301 LYS ASN VAL THR LEU PRO ALA GLY TYR HIS ASP VAL VAL SEQRES 13 B 301 ARG GLU ALA GLY GLY VAL ARG SER ALA LEU ALA ALA HIS SEQRES 14 B 301 PRO LEU PRO LEU ALA ALA CYS HIS CYS ASP PRO LEU CYS SEQRES 15 B 301 GLU ASN PHE LEU ASP THR GLY GLU ARG MSE TRP ILE VAL SEQRES 16 B 301 ASP TRP GLU TYR SER GLY MSE ASN ASP PRO LEU TRP ASP SEQRES 17 B 301 LEU GLY ASP LEU SER VAL GLU GLY LYS PHE ASN ALA ASN SEQRES 18 B 301 GLN ASP GLU GLU LEU MSE ARG ALA TYR PHE GLY GLY GLU SEQRES 19 B 301 ALA ARG PRO ALA GLU ARG GLY ARG VAL VAL ILE TYR LYS SEQRES 20 B 301 ALA MSE CYS ASP LEU LEU TRP THR LEU TRP GLY LEU ILE SEQRES 21 B 301 GLN LEU ALA ASN ASP ASN PRO VAL ASP ASP PHE ARG ALA SEQRES 22 B 301 TYR ALA ASP GLY ARG PHE ALA ARG CYS LYS ALA LEU MSE SEQRES 23 B 301 GLU THR PRO GLU PHE SER ARG HIS LEU ALA ALA VAL ARG SEQRES 24 B 301 MSE GLY MODRES 3DXQ MSE A 1 MET SELENOMETHIONINE MODRES 3DXQ MSE A 2 MET SELENOMETHIONINE MODRES 3DXQ MSE A 15 MET SELENOMETHIONINE MODRES 3DXQ MSE A 83 MET SELENOMETHIONINE MODRES 3DXQ MSE A 94 MET SELENOMETHIONINE MODRES 3DXQ MSE A 132 MET SELENOMETHIONINE MODRES 3DXQ MSE A 191 MET SELENOMETHIONINE MODRES 3DXQ MSE A 201 MET SELENOMETHIONINE MODRES 3DXQ MSE A 226 MET SELENOMETHIONINE MODRES 3DXQ MSE A 248 MET SELENOMETHIONINE MODRES 3DXQ MSE A 285 MET SELENOMETHIONINE MODRES 3DXQ MSE A 299 MET SELENOMETHIONINE MODRES 3DXQ MSE B 1 MET SELENOMETHIONINE MODRES 3DXQ MSE B 2 MET SELENOMETHIONINE MODRES 3DXQ MSE B 15 MET SELENOMETHIONINE MODRES 3DXQ MSE B 83 MET SELENOMETHIONINE MODRES 3DXQ MSE B 94 MET SELENOMETHIONINE MODRES 3DXQ MSE B 132 MET SELENOMETHIONINE MODRES 3DXQ MSE B 191 MET SELENOMETHIONINE MODRES 3DXQ MSE B 201 MET SELENOMETHIONINE MODRES 3DXQ MSE B 226 MET SELENOMETHIONINE MODRES 3DXQ MSE B 248 MET SELENOMETHIONINE MODRES 3DXQ MSE B 285 MET SELENOMETHIONINE MODRES 3DXQ MSE B 299 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 2 5 HET MSE A 15 8 HET MSE A 83 8 HET MSE A 94 8 HET MSE A 132 8 HET MSE A 191 8 HET MSE A 201 8 HET MSE A 226 8 HET MSE A 248 8 HET MSE A 285 8 HET MSE A 299 13 HET MSE B 1 5 HET MSE B 2 5 HET MSE B 15 8 HET MSE B 83 8 HET MSE B 94 8 HET MSE B 132 8 HET MSE B 191 8 HET MSE B 201 8 HET MSE B 226 8 HET MSE B 248 8 HET MSE B 285 8 HET MSE B 299 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 24(C5 H11 N O2 SE) HELIX 1 1 MSE A 1 LEU A 10 1 10 HELIX 2 2 ASN A 53 ALA A 67 1 15 HELIX 3 3 SER A 95 ARG A 102 1 8 HELIX 4 4 GLY A 104 GLY A 118 1 15 HELIX 5 5 GLU A 128 SER A 141 1 14 HELIX 6 6 GLY A 150 ALA A 167 1 18 HELIX 7 7 LEU A 180 GLU A 182 5 3 HELIX 8 8 PRO A 204 GLY A 215 1 12 HELIX 9 9 ASN A 218 GLY A 231 1 14 HELIX 10 10 ARG A 235 ASN A 263 1 29 HELIX 11 11 ASP A 269 THR A 287 1 19 HELIX 12 12 THR A 287 GLY A 300 1 14 HELIX 13 13 MSE B 1 ALA B 11 1 11 HELIX 14 14 ILE B 13 ALA B 17 5 5 HELIX 15 15 ASN B 53 ALA B 67 1 15 HELIX 16 16 SER B 95 ARG B 102 1 8 HELIX 17 17 GLY B 104 GLY B 118 1 15 HELIX 18 18 GLU B 128 SER B 141 1 14 HELIX 19 19 GLY B 150 ALA B 167 1 18 HELIX 20 20 LEU B 180 GLU B 182 5 3 HELIX 21 21 ASP B 203 GLY B 215 1 13 HELIX 22 22 ASN B 218 GLY B 231 1 14 HELIX 23 23 ARG B 235 ASN B 263 1 29 HELIX 24 24 ASP B 269 THR B 287 1 19 HELIX 25 25 THR B 287 GLY B 300 1 14 SHEET 1 A 5 LEU A 23 LEU A 26 0 SHEET 2 A 5 ASN A 31 ALA A 36 -1 O VAL A 33 N LEU A 26 SHEET 3 A 5 LEU A 39 PRO A 44 -1 O ILE A 43 N LEU A 32 SHEET 4 A 5 MSE A 83 ARG A 86 -1 O THR A 85 N CYS A 40 SHEET 5 A 5 VAL A 73 VAL A 76 -1 N LEU A 74 O VAL A 84 SHEET 1 B 3 GLN A 92 THR A 93 0 SHEET 2 B 3 PHE A 184 ASP A 186 -1 O ASP A 186 N GLN A 92 SHEET 3 B 3 MSE A 191 ILE A 193 -1 O TRP A 192 N LEU A 185 SHEET 1 C 2 ALA A 173 CYS A 175 0 SHEET 2 C 2 GLY A 200 ASN A 202 -1 O ASN A 202 N ALA A 173 SHEET 1 D 5 LEU B 23 ARG B 25 0 SHEET 2 D 5 LEU B 32 ALA B 36 -1 O ARG B 35 N GLU B 24 SHEET 3 D 5 LEU B 39 ILE B 43 -1 O LEU B 39 N ALA B 36 SHEET 4 D 5 MSE B 83 ARG B 86 -1 O THR B 85 N CYS B 40 SHEET 5 D 5 VAL B 73 VAL B 76 -1 N HIS B 75 O VAL B 84 SHEET 1 E 3 GLN B 92 THR B 93 0 SHEET 2 E 3 PHE B 184 ASP B 186 -1 O ASP B 186 N GLN B 92 SHEET 3 E 3 MSE B 191 ILE B 193 -1 O TRP B 192 N LEU B 185 SHEET 1 F 2 ALA B 173 CYS B 175 0 SHEET 2 F 2 GLY B 200 ASN B 202 -1 O ASN B 202 N ALA B 173 LINK C MSE A 1 N MSE A 2 1555 1555 1.33 LINK C MSE A 2 N THR A 3 1555 1555 1.33 LINK C PRO A 14 N MSE A 15 1555 1555 1.32 LINK C MSE A 15 N LEU A 16 1555 1555 1.33 LINK C VAL A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N VAL A 84 1555 1555 1.33 LINK C THR A 93 N MSE A 94 1555 1555 1.32 LINK C MSE A 94 N SER A 95 1555 1555 1.33 LINK C ALA A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N ILE A 133 1555 1555 1.33 LINK C ARG A 190 N MSE A 191 1555 1555 1.32 LINK C MSE A 191 N TRP A 192 1555 1555 1.33 LINK C GLY A 200 N MSE A 201 1555 1555 1.33 LINK C MSE A 201 N ASN A 202 1555 1555 1.34 LINK C LEU A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N ARG A 227 1555 1555 1.32 LINK C ALA A 247 N MSE A 248 1555 1555 1.33 LINK C MSE A 248 N CYS A 249 1555 1555 1.33 LINK C LEU A 284 N MSE A 285 1555 1555 1.33 LINK C MSE A 285 N GLU A 286 1555 1555 1.32 LINK C ARG A 298 N MSE A 299 1555 1555 1.33 LINK C MSE A 299 N GLY A 300 1555 1555 1.33 LINK C MSE B 1 N MSE B 2 1555 1555 1.33 LINK C MSE B 2 N THR B 3 1555 1555 1.33 LINK C PRO B 14 N MSE B 15 1555 1555 1.32 LINK C MSE B 15 N LEU B 16 1555 1555 1.34 LINK C VAL B 82 N MSE B 83 1555 1555 1.31 LINK C MSE B 83 N VAL B 84 1555 1555 1.34 LINK C THR B 93 N MSE B 94 1555 1555 1.32 LINK C MSE B 94 N SER B 95 1555 1555 1.33 LINK C ALA B 131 N MSE B 132 1555 1555 1.34 LINK C MSE B 132 N ILE B 133 1555 1555 1.33 LINK C ARG B 190 N MSE B 191 1555 1555 1.32 LINK C MSE B 191 N TRP B 192 1555 1555 1.33 LINK C GLY B 200 N MSE B 201 1555 1555 1.33 LINK C MSE B 201 N ASN B 202 1555 1555 1.34 LINK C LEU B 225 N MSE B 226 1555 1555 1.32 LINK C MSE B 226 N ARG B 227 1555 1555 1.32 LINK C ALA B 247 N MSE B 248 1555 1555 1.32 LINK C MSE B 248 N CYS B 249 1555 1555 1.33 LINK C LEU B 284 N MSE B 285 1555 1555 1.32 LINK C MSE B 285 N GLU B 286 1555 1555 1.33 LINK C ARG B 298 N MSE B 299 1555 1555 1.31 LINK C MSE B 299 N GLY B 300 1555 1555 1.33 CRYST1 102.070 173.620 39.930 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009797 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025044 0.00000 HETATM 1 N MSE A 1 26.123 132.046 52.126 1.00 79.14 N HETATM 2 CA MSE A 1 25.981 131.287 53.395 1.00 79.12 C HETATM 3 C MSE A 1 26.373 129.828 53.183 1.00 78.47 C HETATM 4 O MSE A 1 27.129 129.276 53.975 1.00 78.96 O HETATM 5 CB MSE A 1 24.544 131.381 53.922 1.00 79.08 C HETATM 6 N MSE A 2 25.862 129.214 52.114 1.00 77.50 N HETATM 7 CA MSE A 2 26.140 127.799 51.806 1.00 76.16 C HETATM 8 C MSE A 2 27.642 127.533 51.726 1.00 75.02 C HETATM 9 O MSE A 2 28.131 126.543 52.271 1.00 75.68 O HETATM 10 CB MSE A 2 25.468 127.371 50.489 1.00 74.91 C