HEADER HYDROLASE 25-JUL-08 3DYC TITLE STRUCTURE OF E322Y ALKALINE PHOSPHATASE IN COMPLEX WITH INORGANIC TITLE 2 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ALKALINE PHOSPHATASE; COMPND 5 SYNONYM: APASE; COMPND 6 EC: 3.1.3.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: STRAIN K12; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 STRAIN: K-12 MG1655; SOURCE 6 GENE: PHOA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SM547 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMAL_P2X KEYWDS ALPHA/BETA/ALPHA, HYDROLASE, MAGNESIUM, METAL-BINDING, PERIPLASM, KEYWDS 2 PHOSPHOPROTEIN, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR J.G.ZALATAN,T.D.FENN,D.HERSCHLAG REVDAT 5 20-OCT-21 3DYC 1 REMARK SEQADV LINK REVDAT 4 09-JUN-09 3DYC 1 REVDAT REVDAT 3 24-FEB-09 3DYC 1 VERSN REVDAT 2 09-DEC-08 3DYC 1 JRNL REVDAT 1 21-OCT-08 3DYC 0 JRNL AUTH J.G.ZALATAN,T.D.FENN,D.HERSCHLAG JRNL TITL COMPARATIVE ENZYMOLOGY IN THE ALKALINE PHOSPHATASE JRNL TITL 2 SUPERFAMILY TO DETERMINE THE CATALYTIC ROLE OF AN JRNL TITL 3 ACTIVE-SITE METAL ION. JRNL REF J.MOL.BIOL. V. 384 1174 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18851975 JRNL DOI 10.1016/J.JMB.2008.09.059 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 84969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4630 - 7.1490 0.99 2880 130 0.1600 0.1700 REMARK 3 2 7.1490 - 5.6770 1.00 2843 144 0.1590 0.2080 REMARK 3 3 5.6770 - 4.9600 0.99 2793 177 0.1340 0.1780 REMARK 3 4 4.9600 - 4.5070 0.97 2799 138 0.1190 0.1820 REMARK 3 5 4.5070 - 4.1840 0.97 2759 163 0.1280 0.1680 REMARK 3 6 4.1840 - 3.9380 0.97 2783 139 0.1440 0.2090 REMARK 3 7 3.9380 - 3.7400 0.98 2766 161 0.1430 0.2080 REMARK 3 8 3.7400 - 3.5780 0.97 2788 140 0.1520 0.2340 REMARK 3 9 3.5780 - 3.4400 0.97 2738 160 0.1500 0.2010 REMARK 3 10 3.4400 - 3.3210 0.97 2772 136 0.1560 0.1920 REMARK 3 11 3.3210 - 3.2170 0.98 2809 124 0.1720 0.2310 REMARK 3 12 3.2170 - 3.1250 0.98 2786 165 0.1760 0.2240 REMARK 3 13 3.1250 - 3.0430 0.98 2772 167 0.1960 0.2680 REMARK 3 14 3.0430 - 2.9690 0.98 2784 174 0.1970 0.3290 REMARK 3 15 2.9690 - 2.9010 0.98 2804 147 0.2030 0.3120 REMARK 3 16 2.9010 - 2.8400 0.99 2809 148 0.2000 0.2930 REMARK 3 17 2.8400 - 2.7830 0.99 2824 157 0.2170 0.2990 REMARK 3 18 2.7830 - 2.7300 1.00 2816 149 0.2190 0.3200 REMARK 3 19 2.7300 - 2.6820 0.99 2818 166 0.2160 0.2990 REMARK 3 20 2.6820 - 2.6360 0.99 2796 172 0.2050 0.2780 REMARK 3 21 2.6360 - 2.5940 0.99 2824 136 0.2140 0.2860 REMARK 3 22 2.5940 - 2.5540 1.00 2834 164 0.2130 0.3210 REMARK 3 23 2.5540 - 2.5160 0.99 2838 139 0.2360 0.3120 REMARK 3 24 2.5160 - 2.4810 0.99 2786 169 0.2490 0.3370 REMARK 3 25 2.4810 - 2.4470 0.96 2779 121 0.2530 0.3220 REMARK 3 26 2.4470 - 2.4150 0.90 2596 127 0.2570 0.3260 REMARK 3 27 2.4150 - 2.3850 0.83 2355 133 0.2770 0.3800 REMARK 3 28 2.3850 - 2.3570 0.74 2128 100 0.2650 0.2950 REMARK 3 29 2.3570 - 2.3290 0.67 1884 106 0.2810 0.3680 REMARK 3 30 2.3290 - 2.3030 0.58 1675 79 0.2920 0.3470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.68800 REMARK 3 B22 (A**2) : 6.68800 REMARK 3 B33 (A**2) : -13.37500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6690 REMARK 3 ANGLE : 1.000 9080 REMARK 3 CHIRALITY : 0.070 1036 REMARK 3 PLANARITY : 0.004 1208 REMARK 3 DIHEDRAL : 18.903 2398 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 54.2322 -31.2482 -10.2225 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: 0.1892 REMARK 3 T33: 0.1807 T12: -0.0510 REMARK 3 T13: -0.0117 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.3950 L22: 0.6246 REMARK 3 L33: 0.3162 L12: 0.3613 REMARK 3 L13: -0.0460 L23: 0.1469 REMARK 3 S TENSOR REMARK 3 S11: 0.1367 S12: -0.1099 S13: 0.0157 REMARK 3 S21: 0.0644 S22: -0.1479 S23: 0.0087 REMARK 3 S31: 0.0915 S32: -0.0661 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 62.6917 -0.2302 -24.2904 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.1380 REMARK 3 T33: 0.1978 T12: 0.0253 REMARK 3 T13: 0.0484 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.3028 L22: 0.5417 REMARK 3 L33: 0.3933 L12: 0.0364 REMARK 3 L13: -0.0176 L23: 0.1361 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: -0.0504 S13: 0.0363 REMARK 3 S21: -0.1497 S22: -0.0932 S23: 0.0216 REMARK 3 S31: -0.1003 S32: 0.0036 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2825 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FLUORIDE, 20% PEG 3350, REMARK 280 AND 0.5 MM ZINC CHLORIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.63300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.63300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.63300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.63300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.63300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.63300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -251.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 THR B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 109.63 -55.09 REMARK 500 ASN A 9 116.49 -161.62 REMARK 500 THR A 111 -31.64 -138.65 REMARK 500 ALA A 217 -156.93 -120.84 REMARK 500 HIS A 425 5.75 82.63 REMARK 500 ALA B 217 168.68 179.53 REMARK 500 ALA B 249 114.07 -160.50 REMARK 500 THR B 367 -167.50 -160.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 ASP A 369 OD2 94.9 REMARK 620 3 HIS A 370 NE2 109.0 95.9 REMARK 620 4 PO4 A 452 O2 106.7 141.9 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 327 OD1 REMARK 620 2 HIS A 331 NE2 98.5 REMARK 620 3 HIS A 412 NE2 95.4 94.5 REMARK 620 4 PO4 A 452 O1 132.4 110.4 118.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 51 OD1 REMARK 620 2 ASP B 369 OD2 90.2 REMARK 620 3 HIS B 370 NE2 109.9 93.0 REMARK 620 4 PO4 B 452 O2 104.6 153.4 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 327 OD1 REMARK 620 2 HIS B 331 NE2 101.5 REMARK 620 3 HIS B 412 NE2 98.7 100.8 REMARK 620 4 PO4 B 452 O2 80.5 164.2 94.3 REMARK 620 5 PO4 B 452 O4 131.8 106.6 113.1 62.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 452 DBREF 3DYC A 4 449 UNP P00634 PPB_ECOLI 26 471 DBREF 3DYC B 4 449 UNP P00634 PPB_ECOLI 26 471 SEQADV 3DYC TYR A 322 UNP P00634 GLU 344 ENGINEERED MUTATION SEQADV 3DYC TYR B 322 UNP P00634 GLU 344 ENGINEERED MUTATION SEQRES 1 A 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 A 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 A 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 A 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 A 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 A 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 A 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 A 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA ALA SEQRES 9 A 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 A 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 A 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 A 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 A 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 A 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 A 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 A 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 A 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 A 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 A 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 A 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 A 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 A 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 A 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 A 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 A 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL TYR GLY ALA SER SEQRES 26 A 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 A 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 A 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 A 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 A 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 A 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 A 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 A 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 A 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 A 449 LYS ALA ALA LEU GLY LEU LYS SEQRES 1 B 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 B 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 B 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 B 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 B 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 B 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 B 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 B 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP SER ALA ALA SEQRES 9 B 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 B 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 B 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 B 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 B 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 B 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 B 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 B 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 B 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 B 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 B 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 B 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 B 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 B 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 B 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 B 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 B 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL TYR GLY ALA SER SEQRES 26 B 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 B 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 B 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 B 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 B 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 B 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 B 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 B 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 B 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 B 449 LYS ALA ALA LEU GLY LEU LYS HET ZN A 450 1 HET ZN A 451 1 HET PO4 A 452 5 HET ZN A 453 1 HET ZN A 454 1 HET ZN B 450 1 HET ZN B 451 1 HET PO4 B 452 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 11 HOH *440(H2 O) HELIX 1 1 GLN A 29 ASP A 35 1 7 HELIX 2 2 GLY A 54 GLU A 66 1 13 HELIX 3 3 GLY A 74 LEU A 78 5 5 HELIX 4 4 ASP A 101 GLY A 112 1 12 HELIX 5 5 THR A 131 ALA A 139 1 9 HELIX 6 6 ASP A 153 ALA A 158 1 6 HELIX 7 7 GLY A 170 CYS A 178 1 9 HELIX 8 8 PRO A 179 ALA A 182 5 4 HELIX 9 9 SER A 190 ARG A 199 1 10 HELIX 10 10 GLY A 207 ALA A 212 1 6 HELIX 11 11 THR A 224 ARG A 232 1 9 HELIX 12 12 ASP A 239 VAL A 246 1 8 HELIX 13 13 HIS A 276 LYS A 281 1 6 HELIX 14 14 THR A 298 SER A 311 1 14 HELIX 15 15 ALA A 324 ALA A 332 1 9 HELIX 16 16 ASN A 334 GLY A 360 1 27 HELIX 17 17 HIS A 425 VAL A 430 5 6 HELIX 18 18 GLN A 435 LEU A 446 1 12 HELIX 19 19 GLN B 29 ASP B 35 1 7 HELIX 20 20 GLY B 54 GLY B 67 1 14 HELIX 21 21 GLY B 74 LEU B 78 5 5 HELIX 22 22 ASP B 101 GLY B 112 1 12 HELIX 23 23 THR B 131 ALA B 139 1 9 HELIX 24 24 ASP B 153 ALA B 158 1 6 HELIX 25 25 GLY B 170 CYS B 178 1 9 HELIX 26 26 ALA B 182 GLY B 186 5 5 HELIX 27 27 SER B 190 ARG B 199 1 10 HELIX 28 28 ALA B 208 GLU B 213 5 6 HELIX 29 29 THR B 224 ARG B 232 1 9 HELIX 30 30 ASP B 239 SER B 245 1 7 HELIX 31 31 HIS B 276 LYS B 281 1 6 HELIX 32 32 THR B 298 SER B 311 1 14 HELIX 33 33 ALA B 324 ALA B 332 1 9 HELIX 34 34 ASN B 334 GLY B 360 1 27 HELIX 35 35 HIS B 425 VAL B 430 5 6 HELIX 36 36 GLN B 435 LEU B 446 1 12 SHEET 1 A10 GLN A 235 VAL A 237 0 SHEET 2 A10 LEU A 255 LEU A 258 1 O LEU A 256 N GLN A 235 SHEET 3 A10 VAL A 202 GLY A 206 1 N THR A 203 O GLY A 257 SHEET 4 A10 ALA A 142 GLU A 150 1 N ASN A 145 O VAL A 202 SHEET 5 A10 PHE A 317 GLY A 323 1 O GLN A 320 N VAL A 146 SHEET 6 A10 ASN A 44 GLY A 50 1 N LEU A 47 O VAL A 321 SHEET 7 A10 THR A 362 ALA A 368 1 O ILE A 365 N LEU A 48 SHEET 8 A10 LEU A 417 TYR A 422 -1 O TYR A 422 N VAL A 364 SHEET 9 A10 LEU A 80 THR A 85 -1 N GLY A 82 O ILE A 419 SHEET 10 A10 GLY A 431 ASP A 434 1 O THR A 433 N THR A 85 SHEET 1 B 2 ALA A 88 LEU A 89 0 SHEET 2 B 2 PRO A 96 ASP A 97 -1 O ASP A 97 N ALA A 88 SHEET 1 C 2 TRP A 268 LEU A 269 0 SHEET 2 C 2 THR A 287 PRO A 288 -1 O THR A 287 N LEU A 269 SHEET 1 D 4 THR A 274 TYR A 275 0 SHEET 2 D 4 LEU A 386 ASN A 391 -1 O THR A 387 N THR A 274 SHEET 3 D 4 VAL A 397 TYR A 402 -1 O MET A 398 N LEU A 390 SHEET 4 D 4 GLN A 375 VAL A 377 -1 N GLN A 375 O SER A 401 SHEET 1 E10 GLN B 235 VAL B 237 0 SHEET 2 E10 LEU B 255 LEU B 258 1 O LEU B 256 N GLN B 235 SHEET 3 E10 VAL B 202 GLY B 206 1 N THR B 203 O GLY B 257 SHEET 4 E10 ALA B 142 GLU B 150 1 N SER B 147 O LEU B 204 SHEET 5 E10 PHE B 317 GLY B 323 1 O GLN B 320 N VAL B 146 SHEET 6 E10 ASN B 44 GLY B 50 1 N ILE B 49 O VAL B 321 SHEET 7 E10 THR B 362 ALA B 368 1 O ILE B 365 N LEU B 48 SHEET 8 E10 LEU B 417 TYR B 422 -1 O TYR B 422 N VAL B 364 SHEET 9 E10 LEU B 80 THR B 85 -1 N LEU B 80 O ALA B 421 SHEET 10 E10 GLY B 431 ASP B 434 1 O THR B 433 N GLN B 83 SHEET 1 F 2 ALA B 88 LEU B 89 0 SHEET 2 F 2 PRO B 96 ASP B 97 -1 O ASP B 97 N ALA B 88 SHEET 1 G 2 TRP B 268 LEU B 269 0 SHEET 2 G 2 THR B 287 PRO B 288 -1 O THR B 287 N LEU B 269 SHEET 1 H 4 THR B 274 TYR B 275 0 SHEET 2 H 4 LEU B 386 ASN B 391 -1 O THR B 387 N THR B 274 SHEET 3 H 4 VAL B 397 TYR B 402 -1 O TYR B 402 N LEU B 386 SHEET 4 H 4 GLN B 375 VAL B 377 -1 N GLN B 375 O SER B 401 SSBOND 1 CYS A 168 CYS A 178 1555 1555 2.05 SSBOND 2 CYS A 286 CYS A 336 1555 1555 2.05 SSBOND 3 CYS B 168 CYS B 178 1555 1555 2.04 SSBOND 4 CYS B 286 CYS B 336 1555 1555 2.05 LINK OD1 ASP A 51 ZN ZN A 451 1555 1555 2.15 LINK NE2 HIS A 125 ZN ZN A 453 1555 1555 2.26 LINK OD1 ASP A 327 ZN ZN A 450 1555 1555 2.25 LINK NE2 HIS A 331 ZN ZN A 450 1555 1555 2.18 LINK OD2 ASP A 369 ZN ZN A 451 1555 1555 2.18 LINK NE2 HIS A 370 ZN ZN A 451 1555 1555 2.18 LINK NE2 HIS A 412 ZN ZN A 450 1555 1555 2.07 LINK ZN ZN A 450 O1 PO4 A 452 1555 1555 2.21 LINK ZN ZN A 451 O2 PO4 A 452 1555 1555 2.01 LINK OD1 ASP B 51 ZN ZN B 450 1555 1555 2.09 LINK OD1 ASP B 327 ZN ZN B 451 1555 1555 2.22 LINK NE2 HIS B 331 ZN ZN B 451 1555 1555 1.99 LINK OD2 ASP B 369 ZN ZN B 450 1555 1555 2.01 LINK NE2 HIS B 370 ZN ZN B 450 1555 1555 2.12 LINK NE2 HIS B 412 ZN ZN B 451 1555 1555 2.08 LINK ZN ZN B 450 O2 PO4 B 452 1555 1555 2.12 LINK ZN ZN B 451 O2 PO4 B 452 1555 1555 2.40 LINK ZN ZN B 451 O4 PO4 B 452 1555 1555 2.29 SITE 1 AC1 4 ASP A 327 HIS A 331 HIS A 412 PO4 A 452 SITE 1 AC2 6 ASP A 51 SER A 102 ASP A 327 ASP A 369 SITE 2 AC2 6 HIS A 370 PO4 A 452 SITE 1 AC3 11 ASP A 51 ASP A 101 SER A 102 ARG A 166 SITE 2 AC3 11 ASP A 327 HIS A 331 HIS A 370 HIS A 412 SITE 3 AC3 11 ZN A 450 ZN A 451 HOH A 628 SITE 1 AC4 2 HIS A 125 ASP B 304 SITE 1 AC5 3 THR A 17 ASP A 304 HIS B 125 SITE 1 AC6 6 ASP B 51 SER B 102 ASP B 327 ASP B 369 SITE 2 AC6 6 HIS B 370 PO4 B 452 SITE 1 AC7 4 ASP B 327 HIS B 331 HIS B 412 PO4 B 452 SITE 1 AC8 12 ASP B 51 ASP B 101 SER B 102 ARG B 166 SITE 2 AC8 12 ASP B 327 HIS B 331 HIS B 370 HIS B 412 SITE 3 AC8 12 ZN B 450 ZN B 451 HOH B 527 HOH B 596 CRYST1 161.609 161.609 139.266 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006188 0.003573 0.000000 0.00000 SCALE2 0.000000 0.007145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007181 0.00000