HEADER STRUCTURAL PROTEIN 28-JUL-08 3DYJ TITLE CRYSTAL STRUCTURE OF THE R11R12 DOMAINS OF TALIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TALIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TALIN ROD (UNP RESIDUES:1974-2293); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TLN1, TLN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-151 KEYWDS TALIN, HELIX BUNDLES, CYTOSKELETAL PROTEIN, INTEGRIN-BINDIN SITE, KEYWDS 2 IBS2, CELL MEMBRANE, CELL PROJECTION, CYTOPLASM, CYTOSKELETON, KEYWDS 3 MEMBRANE, PHOSPHOPROTEIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.GINGRAS,M.G.JOYCE,D.R.CRITCHLEY,J.EMSLEY REVDAT 3 25-AUG-21 3DYJ 1 TITLE SEQADV LINK REVDAT 2 07-APR-09 3DYJ 1 JRNL REVDAT 1 27-JAN-09 3DYJ 0 JRNL AUTH A.R.GINGRAS,W.H.ZIEGLER,A.A.BOBKOV,M.G.JOYCE,D.FASCI, JRNL AUTH 2 M.HIMMEL,S.ROTHEMUND,A.RITTER,J.G.GROSSMANN,B.PATEL,N.BATE, JRNL AUTH 3 B.T.GOULT,J.EMSLEY,I.L.BARSUKOV,G.C.ROBERTS,R.C.LIDDINGTON, JRNL AUTH 4 M.H.GINSBERG,D.R.CRITCHLEY JRNL TITL STRUCTURAL DETERMINANTS OF INTEGRIN BINDING TO THE TALIN ROD JRNL REF J.BIOL.CHEM. V. 284 8866 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19176533 JRNL DOI 10.1074/JBC.M805937200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 49457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.774 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4726 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6410 ; 1.454 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 4.839 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;40.945 ;25.227 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 840 ;15.849 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3422 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2657 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3425 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 322 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 101 ; 0.304 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3238 ; 1.074 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5056 ; 1.683 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1626 ; 3.280 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1354 ; 5.068 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1977 A 2001 REMARK 3 RESIDUE RANGE : A 2012 A 2037 REMARK 3 RESIDUE RANGE : A 2041 A 2069 REMARK 3 RESIDUE RANGE : A 2074 A 2102 REMARK 3 RESIDUE RANGE : A 2109 A 2136 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3896 32.4070 4.4452 REMARK 3 T TENSOR REMARK 3 T11: -0.1191 T22: -0.2000 REMARK 3 T33: -0.1262 T12: -0.0054 REMARK 3 T13: 0.0260 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.5505 L22: 1.7147 REMARK 3 L33: 4.1034 L12: 0.3415 REMARK 3 L13: 0.8600 L23: -0.3874 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.1086 S13: -0.0301 REMARK 3 S21: 0.1512 S22: 0.0276 S23: -0.0183 REMARK 3 S31: 0.0758 S32: 0.1268 S33: -0.0523 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2140 A 2161 REMARK 3 RESIDUE RANGE : A 2172 A 2194 REMARK 3 RESIDUE RANGE : A 2199 A 2224 REMARK 3 RESIDUE RANGE : A 2230 A 2259 REMARK 3 RESIDUE RANGE : A 2264 A 2289 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7736 20.1333 -39.1872 REMARK 3 T TENSOR REMARK 3 T11: -0.1469 T22: -0.0567 REMARK 3 T33: -0.1061 T12: 0.0002 REMARK 3 T13: 0.0153 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.9228 L22: 3.0154 REMARK 3 L33: 4.0151 L12: 1.0413 REMARK 3 L13: 1.2000 L23: 3.3131 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.0700 S13: 0.0203 REMARK 3 S21: 0.0842 S22: -0.0762 S23: 0.0447 REMARK 3 S31: 0.0820 S32: -0.3274 S33: 0.0427 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1977 B 2001 REMARK 3 RESIDUE RANGE : B 2012 B 2037 REMARK 3 RESIDUE RANGE : B 2041 B 2069 REMARK 3 RESIDUE RANGE : B 2074 B 2102 REMARK 3 RESIDUE RANGE : B 2109 B 2136 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0512 2.9583 -49.7518 REMARK 3 T TENSOR REMARK 3 T11: -0.1352 T22: -0.1555 REMARK 3 T33: -0.1110 T12: -0.0142 REMARK 3 T13: 0.0460 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.4879 L22: 1.7613 REMARK 3 L33: 3.4692 L12: -0.3600 REMARK 3 L13: 0.4145 L23: 0.6437 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: 0.0419 S13: -0.0814 REMARK 3 S21: 0.0217 S22: -0.0219 S23: -0.0111 REMARK 3 S31: 0.1253 S32: -0.2540 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2140 B 2161 REMARK 3 RESIDUE RANGE : B 2172 B 2194 REMARK 3 RESIDUE RANGE : B 2199 B 2224 REMARK 3 RESIDUE RANGE : B 2230 B 2259 REMARK 3 RESIDUE RANGE : B 2264 B 2289 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3447 -6.9696 -5.7673 REMARK 3 T TENSOR REMARK 3 T11: -0.1081 T22: 0.0038 REMARK 3 T33: -0.0661 T12: -0.0338 REMARK 3 T13: -0.0093 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.8257 L22: 2.1967 REMARK 3 L33: 3.3783 L12: -0.4312 REMARK 3 L13: 0.8125 L23: -2.0900 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: 0.1948 S13: 0.2259 REMARK 3 S21: 0.0332 S22: -0.0723 S23: -0.1284 REMARK 3 S31: -0.0984 S32: 0.3598 S33: 0.1440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9757 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : GE(220) CRYSTAL AND MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : DENZO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 1% PEG 3350, 100MM HEPES REMARK 280 (PH 7.5), 10MM SODIUM THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 273K, PH 7.50, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.82400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1962 REMARK 465 ILE A 1963 REMARK 465 ASP A 1964 REMARK 465 PRO A 1965 REMARK 465 PHE A 1966 REMARK 465 THR A 1967 REMARK 465 GLY A 1968 REMARK 465 ILE A 1969 REMARK 465 ASP A 1970 REMARK 465 PRO A 1971 REMARK 465 PHE A 1972 REMARK 465 THR A 1973 REMARK 465 GLY A 1974 REMARK 465 GLY A 2292 REMARK 465 THR A 2293 REMARK 465 GLY B 1962 REMARK 465 ILE B 1963 REMARK 465 ASP B 1964 REMARK 465 PRO B 1965 REMARK 465 PHE B 1966 REMARK 465 THR B 1967 REMARK 465 GLY B 1968 REMARK 465 ILE B 1969 REMARK 465 ASP B 1970 REMARK 465 PRO B 1971 REMARK 465 PHE B 1972 REMARK 465 THR B 1973 REMARK 465 GLY B 1974 REMARK 465 GLY B 2292 REMARK 465 THR B 2293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 299 O HOH A 330 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B1997 CG - SE - CE ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A2040 138.94 -38.85 REMARK 500 ALA A2102 109.15 -50.87 REMARK 500 LYS B2260 87.84 -174.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 3DYJ A 1974 2293 UNP P26039 TLN1_MOUSE 1974 2293 DBREF 3DYJ B 1974 2293 UNP P26039 TLN1_MOUSE 1974 2293 SEQADV 3DYJ GLY A 1962 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ILE A 1963 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ASP A 1964 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PRO A 1965 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PHE A 1966 UNP P26039 EXPRESSION TAG SEQADV 3DYJ THR A 1967 UNP P26039 EXPRESSION TAG SEQADV 3DYJ GLY A 1968 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ILE A 1969 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ASP A 1970 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PRO A 1971 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PHE A 1972 UNP P26039 EXPRESSION TAG SEQADV 3DYJ THR A 1973 UNP P26039 EXPRESSION TAG SEQADV 3DYJ GLY B 1962 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ILE B 1963 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ASP B 1964 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PRO B 1965 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PHE B 1966 UNP P26039 EXPRESSION TAG SEQADV 3DYJ THR B 1967 UNP P26039 EXPRESSION TAG SEQADV 3DYJ GLY B 1968 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ILE B 1969 UNP P26039 EXPRESSION TAG SEQADV 3DYJ ASP B 1970 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PRO B 1971 UNP P26039 EXPRESSION TAG SEQADV 3DYJ PHE B 1972 UNP P26039 EXPRESSION TAG SEQADV 3DYJ THR B 1973 UNP P26039 EXPRESSION TAG SEQRES 1 A 332 GLY ILE ASP PRO PHE THR GLY ILE ASP PRO PHE THR GLY SEQRES 2 A 332 THR GLN ALA CYS ILE THR ALA ALA SER ALA VAL SER GLY SEQRES 3 A 332 ILE ILE ALA ASP LEU ASP THR THR ILE MSE PHE ALA THR SEQRES 4 A 332 ALA GLY THR LEU ASN ARG GLU GLY ALA GLU THR PHE ALA SEQRES 5 A 332 ASP HIS ARG GLU GLY ILE LEU LYS THR ALA LYS VAL LEU SEQRES 6 A 332 VAL GLU ASP THR LYS VAL LEU VAL GLN ASN ALA ALA GLY SEQRES 7 A 332 SER GLN GLU LYS LEU ALA GLN ALA ALA GLN SER SER VAL SEQRES 8 A 332 ALA THR ILE THR ARG LEU ALA ASP VAL VAL LYS LEU GLY SEQRES 9 A 332 ALA ALA SER LEU GLY ALA GLU ASP PRO GLU THR GLN VAL SEQRES 10 A 332 VAL LEU ILE ASN ALA VAL LYS ASP VAL ALA LYS ALA LEU SEQRES 11 A 332 GLY ASP LEU ILE SER ALA THR LYS ALA ALA ALA GLY LYS SEQRES 12 A 332 VAL GLY ASP ASP PRO ALA VAL TRP GLN LEU LYS ASN SER SEQRES 13 A 332 ALA LYS VAL MSE VAL THR ASN VAL THR SER LEU LEU LYS SEQRES 14 A 332 THR VAL LYS ALA VAL GLU ASP GLU ALA THR LYS GLY THR SEQRES 15 A 332 ARG ALA LEU GLU ALA THR THR GLU HIS ILE ARG GLN GLU SEQRES 16 A 332 LEU ALA VAL PHE CYS SER PRO GLU PRO PRO ALA LYS THR SEQRES 17 A 332 SER THR PRO GLU ASP PHE ILE ARG MSE THR LYS GLY ILE SEQRES 18 A 332 THR MSE ALA THR ALA LYS ALA VAL ALA ALA GLY ASN SER SEQRES 19 A 332 CYS ARG GLN GLU ASP VAL ILE ALA THR ALA ASN LEU SER SEQRES 20 A 332 ARG ARG ALA ILE ALA ASP MSE LEU ARG ALA CYS LYS GLU SEQRES 21 A 332 ALA ALA PHE HIS PRO GLU VAL ALA PRO ASP VAL ARG LEU SEQRES 22 A 332 ARG ALA LEU HIS TYR GLY ARG GLU CYS ALA ASN GLY TYR SEQRES 23 A 332 LEU GLU LEU LEU ASP HIS VAL LEU LEU THR LEU GLN LYS SEQRES 24 A 332 PRO ASN PRO ASP LEU LYS GLN GLN LEU THR GLY HIS SER SEQRES 25 A 332 LYS ARG VAL ALA GLY SER VAL THR GLU LEU ILE GLN ALA SEQRES 26 A 332 ALA GLU ALA MSE LYS GLY THR SEQRES 1 B 332 GLY ILE ASP PRO PHE THR GLY ILE ASP PRO PHE THR GLY SEQRES 2 B 332 THR GLN ALA CYS ILE THR ALA ALA SER ALA VAL SER GLY SEQRES 3 B 332 ILE ILE ALA ASP LEU ASP THR THR ILE MSE PHE ALA THR SEQRES 4 B 332 ALA GLY THR LEU ASN ARG GLU GLY ALA GLU THR PHE ALA SEQRES 5 B 332 ASP HIS ARG GLU GLY ILE LEU LYS THR ALA LYS VAL LEU SEQRES 6 B 332 VAL GLU ASP THR LYS VAL LEU VAL GLN ASN ALA ALA GLY SEQRES 7 B 332 SER GLN GLU LYS LEU ALA GLN ALA ALA GLN SER SER VAL SEQRES 8 B 332 ALA THR ILE THR ARG LEU ALA ASP VAL VAL LYS LEU GLY SEQRES 9 B 332 ALA ALA SER LEU GLY ALA GLU ASP PRO GLU THR GLN VAL SEQRES 10 B 332 VAL LEU ILE ASN ALA VAL LYS ASP VAL ALA LYS ALA LEU SEQRES 11 B 332 GLY ASP LEU ILE SER ALA THR LYS ALA ALA ALA GLY LYS SEQRES 12 B 332 VAL GLY ASP ASP PRO ALA VAL TRP GLN LEU LYS ASN SER SEQRES 13 B 332 ALA LYS VAL MSE VAL THR ASN VAL THR SER LEU LEU LYS SEQRES 14 B 332 THR VAL LYS ALA VAL GLU ASP GLU ALA THR LYS GLY THR SEQRES 15 B 332 ARG ALA LEU GLU ALA THR THR GLU HIS ILE ARG GLN GLU SEQRES 16 B 332 LEU ALA VAL PHE CYS SER PRO GLU PRO PRO ALA LYS THR SEQRES 17 B 332 SER THR PRO GLU ASP PHE ILE ARG MSE THR LYS GLY ILE SEQRES 18 B 332 THR MSE ALA THR ALA LYS ALA VAL ALA ALA GLY ASN SER SEQRES 19 B 332 CYS ARG GLN GLU ASP VAL ILE ALA THR ALA ASN LEU SER SEQRES 20 B 332 ARG ARG ALA ILE ALA ASP MSE LEU ARG ALA CYS LYS GLU SEQRES 21 B 332 ALA ALA PHE HIS PRO GLU VAL ALA PRO ASP VAL ARG LEU SEQRES 22 B 332 ARG ALA LEU HIS TYR GLY ARG GLU CYS ALA ASN GLY TYR SEQRES 23 B 332 LEU GLU LEU LEU ASP HIS VAL LEU LEU THR LEU GLN LYS SEQRES 24 B 332 PRO ASN PRO ASP LEU LYS GLN GLN LEU THR GLY HIS SER SEQRES 25 B 332 LYS ARG VAL ALA GLY SER VAL THR GLU LEU ILE GLN ALA SEQRES 26 B 332 ALA GLU ALA MSE LYS GLY THR MODRES 3DYJ MSE A 1997 MET SELENOMETHIONINE MODRES 3DYJ MSE A 2121 MET SELENOMETHIONINE MODRES 3DYJ MSE A 2178 MET SELENOMETHIONINE MODRES 3DYJ MSE A 2184 MET SELENOMETHIONINE MODRES 3DYJ MSE A 2215 MET SELENOMETHIONINE MODRES 3DYJ MSE A 2290 MET SELENOMETHIONINE MODRES 3DYJ MSE B 1997 MET SELENOMETHIONINE MODRES 3DYJ MSE B 2121 MET SELENOMETHIONINE MODRES 3DYJ MSE B 2178 MET SELENOMETHIONINE MODRES 3DYJ MSE B 2184 MET SELENOMETHIONINE MODRES 3DYJ MSE B 2215 MET SELENOMETHIONINE MODRES 3DYJ MSE B 2290 MET SELENOMETHIONINE HET MSE A1997 8 HET MSE A2121 8 HET MSE A2178 8 HET MSE A2184 8 HET MSE A2215 8 HET MSE A2290 8 HET MSE B1997 8 HET MSE B2121 8 HET MSE B2178 8 HET MSE B2184 8 HET MSE B2215 8 HET MSE B2290 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *332(H2 O) HELIX 1 1 THR A 1975 ALA A 2001 1 27 HELIX 2 2 THR A 2011 ASP A 2014 5 4 HELIX 3 3 HIS A 2015 ALA A 2037 1 23 HELIX 4 4 SER A 2040 LEU A 2069 1 30 HELIX 5 5 ASP A 2073 ALA A 2101 1 29 HELIX 6 6 ASP A 2108 SER A 2162 1 55 HELIX 7 7 THR A 2171 CYS A 2196 1 26 HELIX 8 8 ARG A 2197 PHE A 2224 1 28 HELIX 9 9 ALA A 2229 LYS A 2260 1 32 HELIX 10 10 ASN A 2262 ALA A 2289 1 28 HELIX 11 11 THR B 1975 ALA B 2001 1 27 HELIX 12 12 THR B 2011 ALA B 2038 1 28 HELIX 13 13 SER B 2040 LEU B 2069 1 30 HELIX 14 14 ASP B 2073 ALA B 2102 1 30 HELIX 15 15 ASP B 2108 CYS B 2161 1 54 HELIX 16 16 THR B 2171 CYS B 2196 1 26 HELIX 17 17 ARG B 2197 PHE B 2224 1 28 HELIX 18 18 ALA B 2229 LYS B 2260 1 32 HELIX 19 19 ASN B 2262 MSE B 2290 1 29 LINK C ILE A1996 N MSE A1997 1555 1555 1.34 LINK C MSE A1997 N PHE A1998 1555 1555 1.33 LINK C VAL A2120 N MSE A2121 1555 1555 1.34 LINK C MSE A2121 N VAL A2122 1555 1555 1.33 LINK C ARG A2177 N MSE A2178 1555 1555 1.34 LINK C MSE A2178 N THR A2179 1555 1555 1.33 LINK C THR A2183 N MSE A2184 1555 1555 1.34 LINK C MSE A2184 N ALA A2185 1555 1555 1.32 LINK C ASP A2214 N MSE A2215 1555 1555 1.34 LINK C MSE A2215 N LEU A2216 1555 1555 1.35 LINK C ALA A2289 N MSE A2290 1555 1555 1.33 LINK C MSE A2290 N LYS A2291 1555 1555 1.33 LINK C ILE B1996 N MSE B1997 1555 1555 1.33 LINK C MSE B1997 N PHE B1998 1555 1555 1.34 LINK C VAL B2120 N MSE B2121 1555 1555 1.32 LINK C MSE B2121 N VAL B2122 1555 1555 1.34 LINK C ARG B2177 N MSE B2178 1555 1555 1.33 LINK C MSE B2178 N THR B2179 1555 1555 1.33 LINK C THR B2183 N MSE B2184 1555 1555 1.33 LINK C MSE B2184 N ALA B2185 1555 1555 1.33 LINK C ASP B2214 N MSE B2215 1555 1555 1.34 LINK C MSE B2215 N LEU B2216 1555 1555 1.33 LINK C ALA B2289 N MSE B2290 1555 1555 1.33 LINK C MSE B2290 N LYS B2291 1555 1555 1.34 CRYST1 58.713 57.648 92.547 90.00 102.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017032 0.000000 0.003920 0.00000 SCALE2 0.000000 0.017347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011088 0.00000