HEADER LYASE 29-JUL-08 3DZ4
TITLE HUMAN ADOMETDC WITH 5'-[(2-CARBOXAMIDOETHYL)METHYLAMINO]-5'-DEOXY-8-
TITLE 2 METHYLADENOSINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN;
COMPND 3 CHAIN: B;
COMPND 4 SYNONYM: ADOMETDC, SAMDC, S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA
COMPND 5 CHAIN, S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN;
COMPND 6 EC: 4.1.1.50;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN;
COMPND 10 CHAIN: A;
COMPND 11 SYNONYM: ADOMETDC, SAMDC, S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA
COMPND 12 CHAIN, S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN;
COMPND 13 EC: 4.1.1.50;
COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: AMD1, AMD;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606;
SOURCE 15 GENE: AMD1, AMD;
SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 18 EXPRESSION_SYSTEM_STRAIN: JM109;
SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PQE30
KEYWDS COMPLEXES OF ADOMETDC WITH 8-SUBSTITUTED LIGANDS, DECARBOXYLASE,
KEYWDS 2 LYASE, PYRUVATE, S-ADENOSYL-L-METHIONINE, SPERMIDINE BIOSYNTHESIS,
KEYWDS 3 ZYMOGEN
EXPDTA X-RAY DIFFRACTION
AUTHOR S.BALE,D.E.MCCLOSKEY,A.E.PEGG,J.A.SECRIST III,W.C.GUIDA,S.E.EALICK
REVDAT 6 30-OCT-24 3DZ4 1 REMARK
REVDAT 5 15-NOV-23 3DZ4 1 LINK ATOM
REVDAT 4 30-AUG-23 3DZ4 1 COMPND REMARK SEQADV HETNAM
REVDAT 4 2 1 LINK
REVDAT 3 25-OCT-17 3DZ4 1 REMARK
REVDAT 2 12-JAN-10 3DZ4 1 JRNL
REVDAT 1 10-MAR-09 3DZ4 0
JRNL AUTH D.E.MCCLOSKEY,S.BALE,J.A.SECRIST III,A.TIWARI,T.H.MOSS III,
JRNL AUTH 2 J.VALIYAVEETTIL,W.H.BROOKS,W.C.GUIDA,A.E.PEGG,S.E.EALICK
JRNL TITL NEW INSIGHTS INTO THE DESIGN OF INHIBITORS OF HUMAN
JRNL TITL 2 S-ADENOSYLMETHIONINE DECARBOXYLASE: STUDIES OF ADENINE C8
JRNL TITL 3 SUBSTITUTION IN STRUCTURAL ANALOGUES OF S-ADENOSYLMETHIONINE
JRNL REF J.MED.CHEM. V. 52 1388 2009
JRNL REFN ISSN 0022-2623
JRNL PMID 19209891
JRNL DOI 10.1021/JM801126A
REMARK 2
REMARK 2 RESOLUTION. 1.84 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS 1.2
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : ENGH & HUBER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.11
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 218874.000
REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1
REMARK 3 NUMBER OF REFLECTIONS : 27656
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.204
REMARK 3 FREE R VALUE : 0.237
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 1337
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 6
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.90
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3920
REMARK 3 BIN R VALUE (WORKING SET) : 0.2290
REMARK 3 BIN FREE R VALUE : 0.3010
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 209
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2494
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 32
REMARK 3 SOLVENT ATOMS : 222
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 16.90
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.54
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 10.65000
REMARK 3 B22 (A**2) : -2.42000
REMARK 3 B33 (A**2) : -8.23000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -3.20000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21
REMARK 3 ESD FROM SIGMAA (A) : 0.11
REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25
REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.006
REMARK 3 BOND ANGLES (DEGREES) : 1.300
REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30
REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.180 ; 2.000
REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000
REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.010 ; 2.500
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : FLAT MODEL
REMARK 3 KSOL : 0.40
REMARK 3 BSOL : 39.08
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM
REMARK 3 PARAMETER FILE 2 : PYRUVOYL.PARAM
REMARK 3 PARAMETER FILE 3 : MAP.PARAM
REMARK 3 PARAMETER FILE 4 : WATER.PARAM
REMARK 3 PARAMETER FILE 5 : NULL
REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP
REMARK 3 TOPOLOGY FILE 2 : PYRUVOYL.TOP
REMARK 3 TOPOLOGY FILE 3 : MAP.TOP
REMARK 3 TOPOLOGY FILE 4 : NULL
REMARK 3 TOPOLOGY FILE 5 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4
REMARK 4 3DZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-08.
REMARK 100 THE DEPOSITION ID IS D_1000048670.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-MAY-06
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : CHESS
REMARK 200 BEAMLINE : A1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27656
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6
REMARK 200 DATA REDUNDANCY : 3.200
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : 0.06000
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1
REMARK 200 DATA REDUNDANCY IN SHELL : 2.60
REMARK 200 R MERGE FOR SHELL (I) : 0.14000
REMARK 200 R SYM FOR SHELL (I) : 0.14000
REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: CNS
REMARK 200 STARTING MODEL: 1I7B.PDB
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.14
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 100 MM TRIS, 10 MM DTT,
REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.90900
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.47450
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.90900
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.47450
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13800 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 413 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET B 1
REMARK 465 GLU B 2
REMARK 465 ALA B 3
REMARK 465 ASP B 24
REMARK 465 ALA B 25
REMARK 465 ASN B 26
REMARK 465 PRO A 165
REMARK 465 GLU A 166
REMARK 465 SER A 167
REMARK 465 ARG A 168
REMARK 465 VAL A 169
REMARK 465 ILE A 170
REMARK 465 THR A 294
REMARK 465 VAL A 295
REMARK 465 LEU A 296
REMARK 465 ALA A 297
REMARK 465 SER A 298
REMARK 465 PRO A 299
REMARK 465 GLN A 300
REMARK 465 LYS A 328
REMARK 465 GLN A 329
REMARK 465 GLN A 330
REMARK 465 GLN A 331
REMARK 465 GLN A 332
REMARK 465 GLN A 333
REMARK 465 SER A 334
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 PYR A 68 C SER A 69 N 0.193
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN B 48 41.17 73.78
REMARK 500 SER A 73 -169.07 -118.13
REMARK 500 CYS A 82 -157.46 -133.45
REMARK 500 LEU A 86 68.84 -105.18
REMARK 500 ARG A 114 149.24 -174.74
REMARK 500 PRO A 126 31.73 -95.07
REMARK 500 SER A 154 -143.45 -143.76
REMARK 500 PHE A 250 42.29 -160.02
REMARK 500 ARG A 269 -71.35 -48.27
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 68
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PUT B 350
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8M A 368
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 1JEN RELATED DB: PDB
REMARK 900 RELATED ID: 1I72 RELATED DB: PDB
REMARK 900 RELATED ID: 1I7B RELATED DB: PDB
REMARK 900 RELATED ID: 1I7C RELATED DB: PDB
REMARK 900 RELATED ID: 1I7M RELATED DB: PDB
REMARK 900 RELATED ID: 1I79 RELATED DB: PDB
REMARK 900 RELATED ID: 3DZ2 RELATED DB: PDB
REMARK 900 RELATED ID: 3DZ3 RELATED DB: PDB
REMARK 900 RELATED ID: 3DZ5 RELATED DB: PDB
REMARK 900 RELATED ID: 3DZ6 RELATED DB: PDB
REMARK 900 RELATED ID: 3DZ7 RELATED DB: PDB
DBREF 3DZ4 B 1 67 UNP P17707 DCAM_HUMAN 1 67
DBREF 3DZ4 A 69 334 UNP P17707 DCAM_HUMAN 69 334
SEQADV 3DZ4 PYR A 68 UNP P17707 INSERTION
SEQRES 1 B 67 MET GLU ALA ALA HIS PHE PHE GLU GLY THR GLU LYS LEU
SEQRES 2 B 67 LEU GLU VAL TRP PHE SER ARG GLN GLN PRO ASP ALA ASN
SEQRES 3 B 67 GLN GLY SER GLY ASP LEU ARG THR ILE PRO ARG SER GLU
SEQRES 4 B 67 TRP ASP ILE LEU LEU LYS ASP VAL GLN CYS SER ILE ILE
SEQRES 5 B 67 SER VAL THR LYS THR ASP LYS GLN GLU ALA TYR VAL LEU
SEQRES 6 B 67 SER GLU
SEQRES 1 A 267 PYR SER MET PHE VAL SER LYS ARG ARG PHE ILE LEU LYS
SEQRES 2 A 267 THR CYS GLY THR THR LEU LEU LEU LYS ALA LEU VAL PRO
SEQRES 3 A 267 LEU LEU LYS LEU ALA ARG ASP TYR SER GLY PHE ASP SER
SEQRES 4 A 267 ILE GLN SER PHE PHE TYR SER ARG LYS ASN PHE MET LYS
SEQRES 5 A 267 PRO SER HIS GLN GLY TYR PRO HIS ARG ASN PHE GLN GLU
SEQRES 6 A 267 GLU ILE GLU PHE LEU ASN ALA ILE PHE PRO ASN GLY ALA
SEQRES 7 A 267 ALA TYR CYS MET GLY ARG MET ASN SER ASP CYS TRP TYR
SEQRES 8 A 267 LEU TYR THR LEU ASP PHE PRO GLU SER ARG VAL ILE SER
SEQRES 9 A 267 GLN PRO ASP GLN THR LEU GLU ILE LEU MET SER GLU LEU
SEQRES 10 A 267 ASP PRO ALA VAL MET ASP GLN PHE TYR MET LYS ASP GLY
SEQRES 11 A 267 VAL THR ALA LYS ASP VAL THR ARG GLU SER GLY ILE ARG
SEQRES 12 A 267 ASP LEU ILE PRO GLY SER VAL ILE ASP ALA THR MET PHE
SEQRES 13 A 267 ASN PRO CYS GLY TYR SER MET ASN GLY MET LYS SER ASP
SEQRES 14 A 267 GLY THR TYR TRP THR ILE HIS ILE THR PRO GLU PRO GLU
SEQRES 15 A 267 PHE SER TYR VAL SER PHE GLU THR ASN LEU SER GLN THR
SEQRES 16 A 267 SER TYR ASP ASP LEU ILE ARG LYS VAL VAL GLU VAL PHE
SEQRES 17 A 267 LYS PRO GLY LYS PHE VAL THR THR LEU PHE VAL ASN GLN
SEQRES 18 A 267 SER SER LYS CYS ARG THR VAL LEU ALA SER PRO GLN LYS
SEQRES 19 A 267 ILE GLU GLY PHE LYS ARG LEU ASP CYS GLN SER ALA MET
SEQRES 20 A 267 PHE ASN ASP TYR ASN PHE VAL PHE THR SER PHE ALA LYS
SEQRES 21 A 267 LYS GLN GLN GLN GLN GLN SER
HET PYR A 68 5
HET PUT B 350 6
HET C8M A 368 26
HETNAM PYR PYRUVIC ACID
HETNAM PUT 1,4-DIAMINOBUTANE
HETNAM C8M 3-[{[(2R,3S,4R,5R)-5-(6-AMINO-8-METHYL-9H-PURIN-9-YL)-
HETNAM 2 C8M 3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}(METHYL)
HETNAM 3 C8M AMINO]PROPANAMID E
HETSYN PUT PUTRESCINE
HETSYN C8M 5'-[(2-CARBOXAMIDOMETHYL)METHYLAMINO]-5'-DEOXY-8-
HETSYN 2 C8M METHYLADENOSINE
FORMUL 2 PYR C3 H4 O3
FORMUL 3 PUT C4 H12 N2
FORMUL 4 C8M C15 H23 N7 O4
FORMUL 5 HOH *222(H2 O)
HELIX 1 1 ASP B 31 ILE B 35 5 5
HELIX 2 2 PRO B 36 GLN B 48 1 13
HELIX 3 3 LEU A 86 LYS A 89 5 4
HELIX 4 4 ALA A 90 GLY A 103 1 14
HELIX 5 5 LYS A 119 GLN A 123 5 5
HELIX 6 6 ASN A 129 ALA A 139 1 11
HELIX 7 7 ASP A 185 GLN A 191 1 7
HELIX 8 8 THR A 199 SER A 207 1 9
HELIX 9 9 ILE A 209 ILE A 213 5 5
HELIX 10 10 GLU A 247 PHE A 250 5 4
HELIX 11 11 TYR A 264 LYS A 276 1 13
SHEET 1 A 8 SER B 50 LYS B 56 0
SHEET 2 A 8 GLN B 60 SER B 66 -1 O ALA B 62 N THR B 55
SHEET 3 A 8 MET A 70 SER A 73 -1 O VAL A 72 N GLU B 61
SHEET 4 A 8 ARG A 76 THR A 81 -1 O ILE A 78 N PHE A 71
SHEET 5 A 8 LYS B 12 SER B 19 -1 N LEU B 14 O LEU A 79
SHEET 6 A 8 SER A 106 LYS A 115 -1 O SER A 113 N LEU B 13
SHEET 7 A 8 CYS A 156 LEU A 162 -1 O TYR A 158 N ARG A 114
SHEET 8 A 8 GLY A 144 GLY A 150 -1 N MET A 149 O TRP A 157
SHEET 1 B 8 VAL A 217 MET A 222 0
SHEET 2 B 8 TYR A 228 MET A 233 -1 O SER A 229 N THR A 221
SHEET 3 B 8 TYR A 239 THR A 245 -1 O ILE A 244 N TYR A 228
SHEET 4 B 8 TYR A 252 THR A 257 -1 O TYR A 252 N THR A 245
SHEET 5 B 8 GLN A 175 SER A 182 -1 N MET A 181 O VAL A 253
SHEET 6 B 8 LYS A 279 ASN A 287 -1 O LYS A 279 N SER A 182
SHEET 7 B 8 TYR A 318 ALA A 326 -1 O PHE A 325 N PHE A 280
SHEET 8 B 8 LYS A 306 MET A 314 -1 N GLN A 311 O PHE A 322
LINK C PYR A 68 N SER A 69 1555 1555 1.53
CISPEP 1 TYR A 125 PRO A 126 0 0.20
CISPEP 2 ASN A 224 PRO A 225 0 0.28
SITE 1 AC1 5 SER A 69 LYS A 80 THR A 81 HIS A 243
SITE 2 AC1 5 LEU B 65
SITE 1 AC2 8 PHE A 111 ASP A 174 THR A 176 HOH A 375
SITE 2 AC2 8 HOH A 480 LEU B 13 GLU B 15 HOH B 358
SITE 1 AC3 16 CYS A 82 PHE A 223 ASN A 224 CYS A 226
SITE 2 AC3 16 GLY A 227 TYR A 228 SER A 229 ILE A 244
SITE 3 AC3 16 THR A 245 PRO A 246 GLU A 247 HOH A 448
SITE 4 AC3 16 PHE B 7 LEU B 65 SER B 66 GLU B 67
CRYST1 99.818 50.949 68.985 90.00 105.52 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010018 0.000000 0.002782 0.00000
SCALE2 0.000000 0.019627 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015044 0.00000