data_3DZ8 # _entry.id 3DZ8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DZ8 RCSB RCSB048674 WWPDB D_1000048674 # _pdbx_database_status.entry_id 3DZ8 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shen, Y.' 1 'Tong, Y.' 2 'Sukumar, D.' 3 'Tempel, W.' 4 'Loppnau, P.' 5 'Arrowsmith, C.H.' 6 'Edwards, A.M.' 7 'Bountra, C.' 8 'Wilkstrom, M.' 9 'Bochkarev, A.' 10 'Park, H.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title 'Crystal structure of human Rab3B GTPase bound with GDP' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Shen, Y.' 1 primary 'Tong, Y.' 2 primary 'Sukumar, D.' 3 primary 'Tempel, W.' 4 primary 'Loppnau, P.' 5 primary 'Arrowsmith, C.H.' 6 primary 'Edwards, A.M.' 7 primary 'Bountra, C.' 8 primary 'Wilkstrom, M.' 9 primary 'Bochkarev, A.' 10 primary 'Park, H.' 11 # _cell.entry_id 3DZ8 _cell.length_a 56.969 _cell.length_b 50.875 _cell.length_c 73.553 _cell.angle_alpha 90.000 _cell.angle_beta 110.910 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DZ8 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ras-related protein Rab-3B' 22182.936 1 ? ? 'UNP residues 18-190' ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN ATOM OR ION' ? 6 ? ? ? ? 4 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF DFFEASAKENISVRQAFERLVDAICDKMSDS ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF DFFEASAKENISVRQAFERLVDAICDKMSDS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 ARG n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 TYR n 1 16 PHE n 1 17 GLN n 1 18 GLY n 1 19 ASN n 1 20 PHE n 1 21 ASP n 1 22 TYR n 1 23 MET n 1 24 PHE n 1 25 LYS n 1 26 LEU n 1 27 LEU n 1 28 ILE n 1 29 ILE n 1 30 GLY n 1 31 ASN n 1 32 SER n 1 33 SER n 1 34 VAL n 1 35 GLY n 1 36 LYS n 1 37 THR n 1 38 SER n 1 39 PHE n 1 40 LEU n 1 41 PHE n 1 42 ARG n 1 43 TYR n 1 44 ALA n 1 45 ASP n 1 46 ASP n 1 47 THR n 1 48 PHE n 1 49 THR n 1 50 PRO n 1 51 ALA n 1 52 PHE n 1 53 VAL n 1 54 SER n 1 55 THR n 1 56 VAL n 1 57 GLY n 1 58 ILE n 1 59 ASP n 1 60 PHE n 1 61 LYS n 1 62 VAL n 1 63 LYS n 1 64 THR n 1 65 VAL n 1 66 TYR n 1 67 ARG n 1 68 HIS n 1 69 GLU n 1 70 LYS n 1 71 ARG n 1 72 VAL n 1 73 LYS n 1 74 LEU n 1 75 GLN n 1 76 ILE n 1 77 TRP n 1 78 ASP n 1 79 THR n 1 80 ALA n 1 81 GLY n 1 82 GLN n 1 83 GLU n 1 84 ARG n 1 85 TYR n 1 86 ARG n 1 87 THR n 1 88 ILE n 1 89 THR n 1 90 THR n 1 91 ALA n 1 92 TYR n 1 93 TYR n 1 94 ARG n 1 95 GLY n 1 96 ALA n 1 97 MET n 1 98 GLY n 1 99 PHE n 1 100 ILE n 1 101 LEU n 1 102 MET n 1 103 TYR n 1 104 ASP n 1 105 ILE n 1 106 THR n 1 107 ASN n 1 108 GLU n 1 109 GLU n 1 110 SER n 1 111 PHE n 1 112 ASN n 1 113 ALA n 1 114 VAL n 1 115 GLN n 1 116 ASP n 1 117 TRP n 1 118 ALA n 1 119 THR n 1 120 GLN n 1 121 ILE n 1 122 LYS n 1 123 THR n 1 124 TYR n 1 125 SER n 1 126 TRP n 1 127 ASP n 1 128 ASN n 1 129 ALA n 1 130 GLN n 1 131 VAL n 1 132 ILE n 1 133 LEU n 1 134 VAL n 1 135 GLY n 1 136 ASN n 1 137 LYS n 1 138 CYS n 1 139 ASP n 1 140 MET n 1 141 GLU n 1 142 GLU n 1 143 GLU n 1 144 ARG n 1 145 VAL n 1 146 VAL n 1 147 PRO n 1 148 THR n 1 149 GLU n 1 150 LYS n 1 151 GLY n 1 152 GLN n 1 153 LEU n 1 154 LEU n 1 155 ALA n 1 156 GLU n 1 157 GLN n 1 158 LEU n 1 159 GLY n 1 160 PHE n 1 161 ASP n 1 162 PHE n 1 163 PHE n 1 164 GLU n 1 165 ALA n 1 166 SER n 1 167 ALA n 1 168 LYS n 1 169 GLU n 1 170 ASN n 1 171 ILE n 1 172 SER n 1 173 VAL n 1 174 ARG n 1 175 GLN n 1 176 ALA n 1 177 PHE n 1 178 GLU n 1 179 ARG n 1 180 LEU n 1 181 VAL n 1 182 ASP n 1 183 ALA n 1 184 ILE n 1 185 CYS n 1 186 ASP n 1 187 LYS n 1 188 MET n 1 189 SER n 1 190 ASP n 1 191 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RAB3B _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-V2R' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET28-mhl (GI:134105571)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAB3B_HUMAN _struct_ref.pdbx_db_accession P20337 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE RLVDAICDKMSDS ; _struct_ref.pdbx_align_begin 18 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DZ8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 19 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20337 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 18 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DZ8 MET A 1 ? UNP P20337 ? ? 'EXPRESSION TAG' 0 1 1 3DZ8 HIS A 2 ? UNP P20337 ? ? 'EXPRESSION TAG' 1 2 1 3DZ8 HIS A 3 ? UNP P20337 ? ? 'EXPRESSION TAG' 2 3 1 3DZ8 HIS A 4 ? UNP P20337 ? ? 'EXPRESSION TAG' 3 4 1 3DZ8 HIS A 5 ? UNP P20337 ? ? 'EXPRESSION TAG' 4 5 1 3DZ8 HIS A 6 ? UNP P20337 ? ? 'EXPRESSION TAG' 5 6 1 3DZ8 HIS A 7 ? UNP P20337 ? ? 'EXPRESSION TAG' 6 7 1 3DZ8 SER A 8 ? UNP P20337 ? ? 'EXPRESSION TAG' 7 8 1 3DZ8 SER A 9 ? UNP P20337 ? ? 'EXPRESSION TAG' 8 9 1 3DZ8 GLY A 10 ? UNP P20337 ? ? 'EXPRESSION TAG' 9 10 1 3DZ8 ARG A 11 ? UNP P20337 ? ? 'EXPRESSION TAG' 10 11 1 3DZ8 GLU A 12 ? UNP P20337 ? ? 'EXPRESSION TAG' 11 12 1 3DZ8 ASN A 13 ? UNP P20337 ? ? 'EXPRESSION TAG' 12 13 1 3DZ8 LEU A 14 ? UNP P20337 ? ? 'EXPRESSION TAG' 13 14 1 3DZ8 TYR A 15 ? UNP P20337 ? ? 'EXPRESSION TAG' 14 15 1 3DZ8 PHE A 16 ? UNP P20337 ? ? 'EXPRESSION TAG' 15 16 1 3DZ8 GLN A 17 ? UNP P20337 ? ? 'EXPRESSION TAG' 16 17 1 3DZ8 GLY A 18 ? UNP P20337 ? ? 'EXPRESSION TAG' 17 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3DZ8 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 48.5 _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '2M ammonium sulfate, 0.2M sodium acetate, 0.1M HEPES, 5% MPD, pH 7.5, vapor diffusion, sitting drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 2008-05-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E DW' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3DZ8 _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 25.000 _reflns.number_obs 15627 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_chi_squared 1.518 _reflns.pdbx_redundancy 6.700 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 ? ? ? 0.609 ? ? 1.374 3.30 ? 1500 97.90 1 1 1.97 2.05 ? ? ? 0.471 ? ? 1.403 5.00 ? 1569 99.60 2 1 2.05 2.14 ? ? ? 0.370 ? ? 1.515 7.10 ? 1543 99.70 3 1 2.14 2.25 ? ? ? 0.302 ? ? 1.488 7.20 ? 1563 100.00 4 1 2.25 2.39 ? ? ? 0.218 ? ? 1.507 7.20 ? 1561 100.00 5 1 2.39 2.58 ? ? ? 0.156 ? ? 1.532 7.30 ? 1555 100.00 6 1 2.58 2.84 ? ? ? 0.108 ? ? 1.540 7.40 ? 1570 100.00 7 1 2.84 3.25 ? ? ? 0.059 ? ? 1.497 7.50 ? 1570 100.00 8 1 3.25 4.09 ? ? ? 0.033 ? ? 1.506 7.40 ? 1582 100.00 9 1 4.09 25.00 ? ? ? 0.030 ? ? 1.676 7.40 ? 1614 100.00 10 1 # _refine.entry_id 3DZ8 _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.724 _refine.ls_number_reflns_obs 15562 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY ; _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_R_work 0.211 _refine.ls_wR_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.251 _refine.ls_wR_factor_R_free 0.241 _refine.ls_percent_reflns_R_free 4.903 _refine.ls_number_reflns_R_free 763 _refine.B_iso_mean 15.646 _refine.aniso_B[1][1] -1.208 _refine.aniso_B[2][2] 1.537 _refine.aniso_B[3][3] -1.464 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -1.590 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.915 _refine.pdbx_overall_ESU_R 0.165 _refine.pdbx_overall_ESU_R_Free 0.153 _refine.overall_SU_ML 0.112 _refine.overall_SU_B 8.566 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB ENTRY 2GF9' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1390 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1454 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1456 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 962 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1976 1.381 1.955 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2330 0.862 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 179 6.644 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 66 38.192 23.636 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 240 12.066 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 16.515 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 221 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1618 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 324 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 884 1.403 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 364 0.415 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1419 2.134 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 572 1.684 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 556 2.368 3.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.949 1.900 1112 97.482 1037 0.327 47 0.368 . . . . . 'X-RAY DIFFRACTION' 20 2.002 1.949 1117 99.373 1053 0.294 57 0.295 . . . . . 'X-RAY DIFFRACTION' 20 2.059 2.002 1059 99.622 1003 0.231 52 0.289 . . . . . 'X-RAY DIFFRACTION' 20 2.122 2.059 1089 99.816 1020 0.193 67 0.249 . . . . . 'X-RAY DIFFRACTION' 20 2.191 2.122 993 100.000 947 0.215 46 0.220 . . . . . 'X-RAY DIFFRACTION' 20 2.267 2.191 984 99.797 937 0.216 45 0.287 . . . . . 'X-RAY DIFFRACTION' 20 2.351 2.267 960 100.000 919 0.196 41 0.219 . . . . . 'X-RAY DIFFRACTION' 20 2.446 2.351 918 100.000 879 0.169 39 0.196 . . . . . 'X-RAY DIFFRACTION' 20 2.553 2.446 897 100.000 851 0.189 46 0.236 . . . . . 'X-RAY DIFFRACTION' 20 2.675 2.553 815 100.000 768 0.205 47 0.236 . . . . . 'X-RAY DIFFRACTION' 20 2.817 2.675 812 100.000 775 0.209 37 0.216 . . . . . 'X-RAY DIFFRACTION' 20 2.984 2.817 770 100.000 746 0.203 24 0.229 . . . . . 'X-RAY DIFFRACTION' 20 3.185 2.984 730 100.000 692 0.218 38 0.261 . . . . . 'X-RAY DIFFRACTION' 20 3.433 3.185 655 100.000 619 0.213 36 0.205 . . . . . 'X-RAY DIFFRACTION' 20 3.750 3.433 616 100.000 590 0.201 26 0.253 . . . . . 'X-RAY DIFFRACTION' 20 4.174 3.750 571 100.000 541 0.182 30 0.163 . . . . . 'X-RAY DIFFRACTION' 20 4.785 4.174 509 100.000 481 0.172 28 0.245 . . . . . 'X-RAY DIFFRACTION' 20 5.778 4.785 424 100.000 401 0.227 23 0.273 . . . . . 'X-RAY DIFFRACTION' 20 7.851 5.778 348 100.000 326 0.287 22 0.377 . . . . . 'X-RAY DIFFRACTION' 20 20.000 7.851 226 100.000 214 0.239 12 0.423 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3DZ8 _struct.title 'Crystal structure of human Rab3B GTPase bound with GDP' _struct.pdbx_descriptor 'Crystal structure of human Rab3B GTPase bound with GDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DZ8 _struct_keywords.text ;ras, gdp, gtpase, structural genomics consortium, sgc, Cell membrane, GTP-binding, Lipoprotein, Membrane, Methylation, Nucleotide-binding, Phosphoprotein, Prenylation, Protein transport, Transport ; _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 35 ? THR A 47 ? GLY A 34 THR A 46 1 ? 13 HELX_P HELX_P2 2 ASP A 78 ? TYR A 85 ? ASP A 77 TYR A 84 1 ? 8 HELX_P HELX_P3 3 TYR A 85 ? ARG A 94 ? TYR A 84 ARG A 93 1 ? 10 HELX_P HELX_P4 4 ASN A 107 ? ALA A 113 ? ASN A 106 ALA A 112 1 ? 7 HELX_P HELX_P5 5 ALA A 113 ? SER A 125 ? ALA A 112 SER A 124 1 ? 13 HELX_P HELX_P6 6 MET A 140 ? ARG A 144 ? MET A 139 ARG A 143 5 ? 5 HELX_P HELX_P7 7 PRO A 147 ? GLY A 159 ? PRO A 146 GLY A 158 1 ? 13 HELX_P HELX_P8 8 SER A 172 ? MET A 188 ? SER A 171 MET A 187 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 13 ? PHE A 16 ? ASN A 12 PHE A 15 A 2 ASN A 19 ? TYR A 22 ? ASN A 18 TYR A 21 B 1 PHE A 52 ? VAL A 56 ? PHE A 51 VAL A 55 B 2 PHE A 60 ? ARG A 67 ? PHE A 59 ARG A 66 B 3 VAL A 72 ? TRP A 77 ? VAL A 71 TRP A 76 B 4 PHE A 24 ? GLY A 30 ? PHE A 23 GLY A 29 B 5 GLY A 98 ? ASP A 104 ? GLY A 97 ASP A 103 B 6 GLN A 130 ? ASN A 136 ? GLN A 129 ASN A 135 B 7 ASP A 161 ? GLU A 164 ? ASP A 160 GLU A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 14 ? N LEU A 13 O ASP A 21 ? O ASP A 20 B 1 2 N VAL A 56 ? N VAL A 55 O PHE A 60 ? O PHE A 59 B 2 3 N VAL A 65 ? N VAL A 64 O LEU A 74 ? O LEU A 73 B 3 4 O LYS A 73 ? O LYS A 72 N LEU A 26 ? N LEU A 25 B 4 5 N ILE A 29 ? N ILE A 28 O MET A 102 ? O MET A 101 B 5 6 N TYR A 103 ? N TYR A 102 O ASN A 136 ? O ASN A 135 B 6 7 N LEU A 133 ? N LEU A 132 O ASP A 161 ? O ASP A 160 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE GDP A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE UNX A 501' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE UNX A 502' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE UNX A 504' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE UNX A 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 SER A 33 ? SER A 32 . ? 1_555 ? 2 AC1 15 GLY A 35 ? GLY A 34 . ? 1_555 ? 3 AC1 15 LYS A 36 ? LYS A 35 . ? 1_555 ? 4 AC1 15 THR A 37 ? THR A 36 . ? 1_555 ? 5 AC1 15 SER A 38 ? SER A 37 . ? 1_555 ? 6 AC1 15 ASN A 136 ? ASN A 135 . ? 1_555 ? 7 AC1 15 LYS A 137 ? LYS A 136 . ? 1_555 ? 8 AC1 15 ASP A 139 ? ASP A 138 . ? 1_555 ? 9 AC1 15 MET A 140 ? MET A 139 . ? 1_555 ? 10 AC1 15 SER A 166 ? SER A 165 . ? 1_555 ? 11 AC1 15 ALA A 167 ? ALA A 166 . ? 1_555 ? 12 AC1 15 LYS A 168 ? LYS A 167 . ? 1_555 ? 13 AC1 15 HOH I . ? HOH A 511 . ? 1_555 ? 14 AC1 15 HOH I . ? HOH A 520 . ? 1_555 ? 15 AC1 15 HOH I . ? HOH A 522 . ? 1_555 ? 16 AC2 3 SER A 32 ? SER A 31 . ? 1_555 ? 17 AC2 3 ALA A 80 ? ALA A 79 . ? 1_555 ? 18 AC2 3 HOH I . ? HOH A 510 . ? 1_555 ? 19 AC3 5 PHE A 16 ? PHE A 15 . ? 2_656 ? 20 AC3 5 GLN A 17 ? GLN A 16 . ? 2_656 ? 21 AC3 5 ALA A 44 ? ALA A 43 . ? 1_555 ? 22 AC3 5 ASP A 45 ? ASP A 44 . ? 1_555 ? 23 AC3 5 THR A 49 ? THR A 48 . ? 1_555 ? 24 AC4 2 ARG A 67 ? ARG A 66 . ? 1_555 ? 25 AC4 2 ARG A 174 ? ARG A 173 . ? 1_555 ? 26 AC5 2 ASN A 170 ? ASN A 169 . ? 1_555 ? 27 AC5 2 ARG A 174 ? ARG A 173 . ? 1_555 ? # _atom_sites.entry_id 3DZ8 _atom_sites.fract_transf_matrix[1][1] 0.017553 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006708 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019656 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014554 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? A . n A 1 2 HIS 2 1 ? ? ? A . n A 1 3 HIS 3 2 ? ? ? A . n A 1 4 HIS 4 3 ? ? ? A . n A 1 5 HIS 5 4 ? ? ? A . n A 1 6 HIS 6 5 ? ? ? A . n A 1 7 HIS 7 6 ? ? ? A . n A 1 8 SER 8 7 ? ? ? A . n A 1 9 SER 9 8 ? ? ? A . n A 1 10 GLY 10 9 ? ? ? A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 ASN 13 12 12 ASN ASN A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 PHE 16 15 15 PHE PHE A . n A 1 17 GLN 17 16 16 GLN GLN A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 ASN 19 18 18 ASN ASN A . n A 1 20 PHE 20 19 19 PHE PHE A . n A 1 21 ASP 21 20 20 ASP ASP A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 MET 23 22 22 MET MET A . n A 1 24 PHE 24 23 23 PHE PHE A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 ASN 31 30 30 ASN ASN A . n A 1 32 SER 32 31 31 SER SER A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 LYS 36 35 35 LYS LYS A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 PHE 39 38 38 PHE PHE A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 PHE 41 40 40 PHE PHE A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 TYR 43 42 42 TYR TYR A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 ASP 45 44 44 ASP ASP A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 PRO 50 49 49 PRO PRO A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 PHE 52 51 51 PHE PHE A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 VAL 56 55 55 VAL VAL A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 PHE 60 59 59 PHE PHE A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 LYS 63 62 62 LYS LYS A . n A 1 64 THR 64 63 63 THR THR A . n A 1 65 VAL 65 64 64 VAL VAL A . n A 1 66 TYR 66 65 65 TYR TYR A . n A 1 67 ARG 67 66 66 ARG ARG A . n A 1 68 HIS 68 67 67 HIS HIS A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 LYS 70 69 69 LYS LYS A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 LYS 73 72 72 LYS LYS A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 TRP 77 76 76 TRP TRP A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 THR 79 78 78 THR THR A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 ARG 84 83 83 ARG ARG A . n A 1 85 TYR 85 84 84 TYR TYR A . n A 1 86 ARG 86 85 85 ARG ARG A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 ILE 88 87 87 ILE ILE A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 THR 90 89 89 THR THR A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 TYR 92 91 91 TYR TYR A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 ARG 94 93 93 ARG ARG A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 MET 97 96 96 MET MET A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 ILE 100 99 99 ILE ILE A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 MET 102 101 101 MET MET A . n A 1 103 TYR 103 102 102 TYR TYR A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 ASN 107 106 106 ASN ASN A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 SER 110 109 109 SER SER A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 TRP 117 116 116 TRP TRP A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 GLN 120 119 119 GLN GLN A . n A 1 121 ILE 121 120 120 ILE ILE A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 THR 123 122 122 THR THR A . n A 1 124 TYR 124 123 123 TYR TYR A . n A 1 125 SER 125 124 124 SER SER A . n A 1 126 TRP 126 125 125 TRP TRP A . n A 1 127 ASP 127 126 126 ASP ASP A . n A 1 128 ASN 128 127 127 ASN ASN A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 ILE 132 131 131 ILE ILE A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 VAL 134 133 133 VAL VAL A . n A 1 135 GLY 135 134 134 GLY GLY A . n A 1 136 ASN 136 135 135 ASN ASN A . n A 1 137 LYS 137 136 136 LYS LYS A . n A 1 138 CYS 138 137 137 CYS CYS A . n A 1 139 ASP 139 138 138 ASP ASP A . n A 1 140 MET 140 139 139 MET MET A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 GLU 142 141 141 GLU GLU A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 ARG 144 143 143 ARG ARG A . n A 1 145 VAL 145 144 144 VAL VAL A . n A 1 146 VAL 146 145 145 VAL VAL A . n A 1 147 PRO 147 146 146 PRO PRO A . n A 1 148 THR 148 147 147 THR THR A . n A 1 149 GLU 149 148 148 GLU GLU A . n A 1 150 LYS 150 149 149 LYS LYS A . n A 1 151 GLY 151 150 150 GLY GLY A . n A 1 152 GLN 152 151 151 GLN GLN A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 ALA 155 154 154 ALA ALA A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 GLN 157 156 156 GLN GLN A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 GLY 159 158 158 GLY GLY A . n A 1 160 PHE 160 159 159 PHE PHE A . n A 1 161 ASP 161 160 160 ASP ASP A . n A 1 162 PHE 162 161 161 PHE PHE A . n A 1 163 PHE 163 162 162 PHE PHE A . n A 1 164 GLU 164 163 163 GLU GLU A . n A 1 165 ALA 165 164 164 ALA ALA A . n A 1 166 SER 166 165 165 SER SER A . n A 1 167 ALA 167 166 166 ALA ALA A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 ASN 170 169 169 ASN ASN A . n A 1 171 ILE 171 170 170 ILE ILE A . n A 1 172 SER 172 171 171 SER SER A . n A 1 173 VAL 173 172 172 VAL VAL A . n A 1 174 ARG 174 173 173 ARG ARG A . n A 1 175 GLN 175 174 174 GLN GLN A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 PHE 177 176 176 PHE PHE A . n A 1 178 GLU 178 177 177 GLU GLU A . n A 1 179 ARG 179 178 178 ARG ARG A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 ASP 182 181 181 ASP ASP A . n A 1 183 ALA 183 182 182 ALA ALA A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 CYS 185 184 184 CYS CYS A . n A 1 186 ASP 186 185 185 ASP ASP A . n A 1 187 LYS 187 186 186 LYS LYS A . n A 1 188 MET 188 187 187 MET MET A . n A 1 189 SER 189 188 ? ? ? A . n A 1 190 ASP 190 189 ? ? ? A . n A 1 191 SER 191 190 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 201 201 GDP GDP A . C 3 UNX 1 501 501 UNX UNX A . D 3 UNX 1 502 502 UNX UNX A . E 3 UNX 1 503 503 UNX UNX A . F 3 UNX 1 504 504 UNX UNX A . G 3 UNX 1 505 505 UNX UNX A . H 3 UNX 1 506 506 UNX UNX A . I 4 HOH 1 507 1 HOH HOH A . I 4 HOH 2 508 2 HOH HOH A . I 4 HOH 3 509 3 HOH HOH A . I 4 HOH 4 510 4 HOH HOH A . I 4 HOH 5 511 5 HOH HOH A . I 4 HOH 6 512 6 HOH HOH A . I 4 HOH 7 513 7 HOH HOH A . I 4 HOH 8 514 8 HOH HOH A . I 4 HOH 9 515 9 HOH HOH A . I 4 HOH 10 516 10 HOH HOH A . I 4 HOH 11 517 11 HOH HOH A . I 4 HOH 12 518 12 HOH HOH A . I 4 HOH 13 519 13 HOH HOH A . I 4 HOH 14 520 14 HOH HOH A . I 4 HOH 15 521 15 HOH HOH A . I 4 HOH 16 522 16 HOH HOH A . I 4 HOH 17 523 17 HOH HOH A . I 4 HOH 18 524 18 HOH HOH A . I 4 HOH 19 525 19 HOH HOH A . I 4 HOH 20 526 20 HOH HOH A . I 4 HOH 21 527 21 HOH HOH A . I 4 HOH 22 528 22 HOH HOH A . I 4 HOH 23 529 23 HOH HOH A . I 4 HOH 24 530 24 HOH HOH A . I 4 HOH 25 531 25 HOH HOH A . I 4 HOH 26 532 26 HOH HOH A . I 4 HOH 27 533 27 HOH HOH A . I 4 HOH 28 534 28 HOH HOH A . I 4 HOH 29 535 29 HOH HOH A . I 4 HOH 30 536 30 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3890 ? 1 MORE -19 ? 1 'SSA (A^2)' 15190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 30.7178575603 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 68.7089610576 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 14.0635 7.9495 19.0319 0.0998 0.1620 0.1222 -0.0017 0.0118 0.0134 2.2491 0.9063 3.9417 -0.2879 1.0967 -0.2367 0.0117 -0.0209 0.0091 0.5953 0.0624 -0.1674 -0.1411 0.1075 0.2952 'X-RAY DIFFRACTION' 2 ? refined 0.1834 6.3456 16.9318 0.0583 0.1148 0.0726 -0.0124 -0.0313 -0.0085 2.6703 6.8177 10.1764 -0.5362 1.5328 5.6964 0.0801 -0.2703 0.1902 0.1975 -0.1697 0.4493 0.1134 0.2552 -0.6368 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 187 ? 10 A 11 A 188 'X-RAY DIFFRACTION' ? 2 2 A A 201 ? 201 B . B . 'X-RAY DIFFRACTION' ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC 5.5.0044 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 ARP/wARP . ? ? ? ? 'model building' ? ? ? 6 Coot . ? ? ? ? 'model building' ? ? ? 7 MolProbity . ? ? ? ? 'model building' ? ? ? 8 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 32 ? ? 82.26 8.43 2 1 ASP A 58 ? ? -152.76 24.51 3 1 LYS A 136 ? ? 74.96 31.26 4 1 MET A 139 ? ? -96.20 54.11 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 21 ? CG ? A TYR 22 CG 2 1 Y 1 A TYR 21 ? CD1 ? A TYR 22 CD1 3 1 Y 1 A TYR 21 ? CD2 ? A TYR 22 CD2 4 1 Y 1 A TYR 21 ? CE1 ? A TYR 22 CE1 5 1 Y 1 A TYR 21 ? CE2 ? A TYR 22 CE2 6 1 Y 1 A TYR 21 ? CZ ? A TYR 22 CZ 7 1 Y 1 A TYR 21 ? OH ? A TYR 22 OH 8 1 Y 1 A PHE 47 ? CG ? A PHE 48 CG 9 1 Y 1 A PHE 47 ? CD1 ? A PHE 48 CD1 10 1 Y 1 A PHE 47 ? CD2 ? A PHE 48 CD2 11 1 Y 1 A PHE 47 ? CE1 ? A PHE 48 CE1 12 1 Y 1 A PHE 47 ? CE2 ? A PHE 48 CE2 13 1 Y 1 A PHE 47 ? CZ ? A PHE 48 CZ 14 1 Y 1 A GLU 68 ? CG ? A GLU 69 CG 15 1 Y 1 A GLU 68 ? CD ? A GLU 69 CD 16 1 Y 1 A GLU 68 ? OE1 ? A GLU 69 OE1 17 1 Y 1 A GLU 68 ? OE2 ? A GLU 69 OE2 18 1 Y 1 A LYS 69 ? CE ? A LYS 70 CE 19 1 Y 1 A LYS 69 ? NZ ? A LYS 70 NZ 20 1 Y 1 A ARG 85 ? CD ? A ARG 86 CD 21 1 Y 1 A ARG 85 ? NE ? A ARG 86 NE 22 1 Y 1 A ARG 85 ? CZ ? A ARG 86 CZ 23 1 Y 1 A ARG 85 ? NH1 ? A ARG 86 NH1 24 1 Y 1 A ARG 85 ? NH2 ? A ARG 86 NH2 25 1 Y 1 A GLU 108 ? CD ? A GLU 109 CD 26 1 Y 1 A GLU 108 ? OE1 ? A GLU 109 OE1 27 1 Y 1 A GLU 108 ? OE2 ? A GLU 109 OE2 28 1 Y 1 A GLN 114 ? CG ? A GLN 115 CG 29 1 Y 1 A GLN 114 ? CD ? A GLN 115 CD 30 1 Y 1 A GLN 114 ? OE1 ? A GLN 115 OE1 31 1 Y 1 A GLN 114 ? NE2 ? A GLN 115 NE2 32 1 Y 1 A TYR 123 ? CD2 ? A TYR 124 CD2 33 1 Y 1 A TYR 123 ? CE1 ? A TYR 124 CE1 34 1 Y 1 A TYR 123 ? CE2 ? A TYR 124 CE2 35 1 Y 1 A TYR 123 ? CZ ? A TYR 124 CZ 36 1 Y 1 A TYR 123 ? OH ? A TYR 124 OH 37 1 Y 1 A ASP 126 ? CG ? A ASP 127 CG 38 1 Y 1 A ASP 126 ? OD1 ? A ASP 127 OD1 39 1 Y 1 A ASP 126 ? OD2 ? A ASP 127 OD2 40 1 Y 1 A ASN 127 ? CG ? A ASN 128 CG 41 1 Y 1 A ASN 127 ? OD1 ? A ASN 128 OD1 42 1 Y 1 A ASN 127 ? ND2 ? A ASN 128 ND2 43 1 Y 1 A GLU 142 ? CD ? A GLU 143 CD 44 1 Y 1 A GLU 142 ? OE1 ? A GLU 143 OE1 45 1 Y 1 A GLU 142 ? OE2 ? A GLU 143 OE2 46 1 Y 1 A GLU 148 ? CG ? A GLU 149 CG 47 1 Y 1 A GLU 148 ? CD ? A GLU 149 CD 48 1 Y 1 A GLU 148 ? OE1 ? A GLU 149 OE1 49 1 Y 1 A GLU 148 ? OE2 ? A GLU 149 OE2 50 1 Y 1 A GLU 155 ? CD ? A GLU 156 CD 51 1 Y 1 A GLU 155 ? OE1 ? A GLU 156 OE1 52 1 Y 1 A GLU 155 ? OE2 ? A GLU 156 OE2 53 1 Y 1 A PHE 162 ? CD1 ? A PHE 163 CD1 54 1 Y 1 A PHE 162 ? CD2 ? A PHE 163 CD2 55 1 Y 1 A PHE 162 ? CE1 ? A PHE 163 CE1 56 1 Y 1 A PHE 162 ? CE2 ? A PHE 163 CE2 57 1 Y 1 A PHE 162 ? CZ ? A PHE 163 CZ 58 1 Y 1 A LYS 167 ? CD ? A LYS 168 CD 59 1 Y 1 A LYS 167 ? CE ? A LYS 168 CE 60 1 Y 1 A LYS 167 ? NZ ? A LYS 168 NZ 61 1 Y 1 A ARG 178 ? CD ? A ARG 179 CD 62 1 Y 1 A ARG 178 ? NE ? A ARG 179 NE 63 1 Y 1 A ARG 178 ? CZ ? A ARG 179 CZ 64 1 Y 1 A ARG 178 ? NH1 ? A ARG 179 NH1 65 1 Y 1 A ARG 178 ? NH2 ? A ARG 179 NH2 66 1 Y 1 A ASP 185 ? CG ? A ASP 186 CG 67 1 Y 1 A ASP 185 ? OD1 ? A ASP 186 OD1 68 1 Y 1 A ASP 185 ? OD2 ? A ASP 186 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 0 ? A MET 1 2 1 Y 1 A HIS 1 ? A HIS 2 3 1 Y 1 A HIS 2 ? A HIS 3 4 1 Y 1 A HIS 3 ? A HIS 4 5 1 Y 1 A HIS 4 ? A HIS 5 6 1 Y 1 A HIS 5 ? A HIS 6 7 1 Y 1 A HIS 6 ? A HIS 7 8 1 Y 1 A SER 7 ? A SER 8 9 1 Y 1 A SER 8 ? A SER 9 10 1 Y 1 A GLY 9 ? A GLY 10 11 1 Y 1 A SER 188 ? A SER 189 12 1 Y 1 A ASP 189 ? A ASP 190 13 1 Y 1 A SER 190 ? A SER 191 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH #