HEADER TRANSFERASE 30-JUL-08 3DZO TITLE CRYSTAL STRUCTURE OF A RHOPTRY KINASE FROM TOXOPLASMA GONDII COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOPTRY KINASE DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 196-590; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: 33.M001398; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15-MHL KEYWDS RHOPTRY KINASE, TOXOPLASMA, PARASITIC DISEASE, TRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,A.LAM,A.ALI,Y.H.LIN,S.NI,M.RAVICHANDRAN,G.WASNEY, AUTHOR 2 M.VEDADI,I.KOZIERADZKI,M.SCHAPIRA,A.BOCHKAREV,M.WILKSTROM,C.BOUNTRA, AUTHOR 3 C.H.ARROWSMITH,A.M.EDWARDS,D.SIBLEY,R.HUI,W.QIU,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 8 13-NOV-24 3DZO 1 REMARK REVDAT 7 30-AUG-23 3DZO 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 3DZO 1 REMARK REVDAT 5 13-JUL-11 3DZO 1 VERSN REVDAT 4 01-SEP-09 3DZO 1 JRNL REVDAT 3 18-AUG-09 3DZO 1 AUTHOR JRNL REVDAT 2 24-FEB-09 3DZO 1 VERSN REVDAT 1 16-SEP-08 3DZO 0 JRNL AUTH W.QIU,A.WERNIMONT,K.TANG,S.TAYLOR,V.LUNIN,M.SCHAPIRA, JRNL AUTH 2 S.FENTRESS,R.HUI,L.D.SIBLEY JRNL TITL NOVEL STRUCTURAL AND REGULATORY FEATURES OF RHOPTRY JRNL TITL 2 SECRETORY KINASES IN TOXOPLASMA GONDII. JRNL REF EMBO J. V. 28 969 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19197235 JRNL DOI 10.1038/EMBOJ.2009.24 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 34337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.94000 REMARK 3 B22 (A**2) : 1.88000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.28000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.508 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2789 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3818 ; 1.069 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.049 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;35.732 ;23.033 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;14.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2155 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1301 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1907 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.157 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1800 ; 0.363 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2819 ; 0.621 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1122 ; 1.005 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 992 ; 1.520 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5917 6.6974 24.0498 REMARK 3 T TENSOR REMARK 3 T11: -0.0417 T22: 0.2041 REMARK 3 T33: -0.0154 T12: 0.0562 REMARK 3 T13: -0.0493 T23: -0.2071 REMARK 3 L TENSOR REMARK 3 L11: 7.0036 L22: 2.4335 REMARK 3 L33: 2.7109 L12: -0.0262 REMARK 3 L13: -1.0115 L23: -0.8803 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -1.2488 S13: 0.6977 REMARK 3 S21: 0.0025 S22: -0.0507 S23: -0.0356 REMARK 3 S31: -0.0826 S32: 0.1552 S33: 0.0230 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4178 -7.6236 48.0499 REMARK 3 T TENSOR REMARK 3 T11: 0.3147 T22: 0.9199 REMARK 3 T33: 0.2077 T12: 0.1068 REMARK 3 T13: -0.1770 T23: 0.1339 REMARK 3 L TENSOR REMARK 3 L11: 9.5409 L22: 5.3158 REMARK 3 L33: 17.3519 L12: 2.5729 REMARK 3 L13: -0.2030 L23: -1.1399 REMARK 3 S TENSOR REMARK 3 S11: 0.4724 S12: -2.8434 S13: -1.0473 REMARK 3 S21: 0.5291 S22: -0.0857 S23: 0.4412 REMARK 3 S31: 0.3287 S32: -0.7667 S33: -0.3867 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 254 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3783 -6.2737 40.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.2234 T22: 0.9129 REMARK 3 T33: 0.1446 T12: 0.0112 REMARK 3 T13: -0.0897 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 6.3597 L22: 1.2749 REMARK 3 L33: 2.5985 L12: 2.4248 REMARK 3 L13: -2.4517 L23: -1.6959 REMARK 3 S TENSOR REMARK 3 S11: 0.1395 S12: -1.5296 S13: -0.3554 REMARK 3 S21: 0.5517 S22: -0.1651 S23: -0.3720 REMARK 3 S31: 0.0807 S32: 0.4284 S33: 0.0256 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5391 -1.4508 38.6124 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.8896 REMARK 3 T33: 0.0474 T12: 0.0566 REMARK 3 T13: -0.0298 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 3.8052 L22: 6.9586 REMARK 3 L33: 5.3419 L12: 1.8335 REMARK 3 L13: -1.9027 L23: -3.5430 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: -1.6389 S13: -0.0474 REMARK 3 S21: 0.6781 S22: -0.2517 S23: -0.3743 REMARK 3 S31: 0.1590 S32: 0.4930 S33: 0.2397 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 365 A 433 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3992 1.0057 20.6247 REMARK 3 T TENSOR REMARK 3 T11: -0.1390 T22: -0.0220 REMARK 3 T33: -0.0512 T12: 0.0194 REMARK 3 T13: 0.0004 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 7.5310 L22: 1.7051 REMARK 3 L33: 2.4802 L12: -0.6358 REMARK 3 L13: 0.0935 L23: -0.1926 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -1.0905 S13: 0.1657 REMARK 3 S21: 0.0311 S22: 0.1926 S23: -0.1299 REMARK 3 S31: 0.0576 S32: 0.0398 S33: -0.1280 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 434 A 474 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1242 -18.0060 18.3712 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.1023 REMARK 3 T33: 0.4160 T12: 0.0701 REMARK 3 T13: -0.0062 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.3451 L22: 6.4345 REMARK 3 L33: 0.1754 L12: -1.4612 REMARK 3 L13: 0.0128 L23: 0.1537 REMARK 3 S TENSOR REMARK 3 S11: -0.1771 S12: -0.6414 S13: -0.3950 REMARK 3 S21: -0.0304 S22: 0.1950 S23: -0.5333 REMARK 3 S31: 0.3742 S32: 0.0943 S33: -0.0179 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 475 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6310 -7.0791 6.9906 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: -0.1862 REMARK 3 T33: 0.0116 T12: 0.0018 REMARK 3 T13: 0.0464 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 5.4686 L22: 3.2753 REMARK 3 L33: 2.8900 L12: -1.1088 REMARK 3 L13: -0.8362 L23: 0.5143 REMARK 3 S TENSOR REMARK 3 S11: 0.0804 S12: 0.3738 S13: -0.3589 REMARK 3 S21: -0.4262 S22: 0.0351 S23: -0.1729 REMARK 3 S31: 0.2588 S32: 0.1036 S33: -0.1155 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 559 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7191 10.1303 10.8024 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: -0.1035 REMARK 3 T33: 0.2424 T12: -0.0478 REMARK 3 T13: 0.0643 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 11.5631 L22: 8.0413 REMARK 3 L33: 1.5540 L12: -5.7624 REMARK 3 L13: 0.2026 L23: 1.6168 REMARK 3 S TENSOR REMARK 3 S11: -0.1724 S12: -0.0287 S13: 1.4380 REMARK 3 S21: -0.1932 S22: 0.2456 S23: -0.4390 REMARK 3 S31: -0.2819 S32: 0.0574 S33: -0.0733 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34415 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 173.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : 0.15100 REMARK 200 FOR SHELL : 4.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4000, 0.2 M MGCL2, 0.1 M TRIS REMARK 280 -HCL PH 8.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.14400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 SER A 185 REMARK 465 SER A 186 REMARK 465 GLY A 187 REMARK 465 ARG A 188 REMARK 465 GLU A 189 REMARK 465 MET A 225 REMARK 465 GLN A 226 REMARK 465 SER A 227 REMARK 465 PRO A 294 REMARK 465 PRO A 295 REMARK 465 SER A 296 REMARK 465 ASN A 297 REMARK 465 LYS A 339 REMARK 465 LYS A 340 REMARK 465 LYS A 341 REMARK 465 MET A 342 REMARK 465 ILE A 343 REMARK 465 ARG A 344 REMARK 465 VAL A 345 REMARK 465 ARG A 346 REMARK 465 LEU A 347 REMARK 465 ASP A 348 REMARK 465 GLU A 349 REMARK 465 ARG A 350 REMARK 465 ASP A 351 REMARK 465 MET A 352 REMARK 465 TRP A 353 REMARK 465 THR A 560 REMARK 465 ASP A 561 REMARK 465 GLY A 562 REMARK 465 GLU A 563 REMARK 465 PRO A 564 REMARK 465 THR A 565 REMARK 465 ARG A 566 REMARK 465 GLU A 567 REMARK 465 GLY A 568 REMARK 465 GLY A 569 REMARK 465 ALA A 570 REMARK 465 PRO A 571 REMARK 465 PRO A 572 REMARK 465 SER A 573 REMARK 465 GLY A 574 REMARK 465 THR A 575 REMARK 465 SER A 576 REMARK 465 GLN A 577 REMARK 465 PRO A 578 REMARK 465 ASP A 579 REMARK 465 GLU A 580 REMARK 465 ALA A 581 REMARK 465 GLY A 582 REMARK 465 ALA A 583 REMARK 465 ALA A 584 REMARK 465 GLU A 585 REMARK 465 ALA A 586 REMARK 465 VAL A 587 REMARK 465 THR A 588 REMARK 465 ALA A 589 REMARK 465 ILE A 590 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 192 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 197 CD NE CZ NH1 NH2 REMARK 470 SER A 231 OG REMARK 470 LEU A 232 CG CD1 CD2 REMARK 470 SER A 234 OG REMARK 470 LEU A 237 CG CD1 CD2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLU A 249 CD OE1 OE2 REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 THR A 261 OG1 CG2 REMARK 470 GLU A 273 CD OE1 OE2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 THR A 291 OG1 CG2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 ARG A 293 NE CZ NH1 NH2 REMARK 470 ILE A 299 CG1 CG2 CD1 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 GLN A 301 CG CD OE1 NE2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 LEU A 307 CD1 CD2 REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 335 CD CE NZ REMARK 470 ASP A 336 CG OD1 OD2 REMARK 470 GLN A 338 CG CD OE1 NE2 REMARK 470 VAL A 354 CG1 CG2 REMARK 470 SER A 356 OG REMARK 470 ARG A 357 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 363 CD NE CZ NH1 NH2 REMARK 470 LYS A 383 CE NZ REMARK 470 GLN A 423 CG CD OE1 NE2 REMARK 470 SER A 441 OG REMARK 470 GLN A 465 CG CD OE1 NE2 REMARK 470 HIS A 467 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 529 CG CD CE NZ REMARK 470 GLN A 559 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 197 41.81 -90.35 REMARK 500 LEU A 237 -92.87 -128.11 REMARK 500 LEU A 250 -146.27 -99.51 REMARK 500 ASP A 267 130.28 -38.39 REMARK 500 PRO A 337 72.25 -59.01 REMARK 500 HIS A 382 57.86 -118.48 REMARK 500 THR A 412 -15.97 78.55 REMARK 500 TYR A 413 57.26 -146.87 REMARK 500 PHE A 463 15.46 59.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 113 O REMARK 620 2 HOH A 114 O 80.1 REMARK 620 3 HOH A 115 O 116.5 162.9 REMARK 620 4 GLU A 433 OE2 89.2 70.6 111.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BYV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII SPECIFIC RHOPTRY ANTIGEN REMARK 900 KINASE DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE REMARK 999 UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME REMARK 999 OF DEPOSITION. DBREF 3DZO A 196 590 PDB 3DZO 3DZO 196 590 SEQADV 3DZO MET A 178 PDB 3DZO EXPRESSION TAG SEQADV 3DZO HIS A 179 PDB 3DZO EXPRESSION TAG SEQADV 3DZO HIS A 180 PDB 3DZO EXPRESSION TAG SEQADV 3DZO HIS A 181 PDB 3DZO EXPRESSION TAG SEQADV 3DZO HIS A 182 PDB 3DZO EXPRESSION TAG SEQADV 3DZO HIS A 183 PDB 3DZO EXPRESSION TAG SEQADV 3DZO HIS A 184 PDB 3DZO EXPRESSION TAG SEQADV 3DZO SER A 185 PDB 3DZO EXPRESSION TAG SEQADV 3DZO SER A 186 PDB 3DZO EXPRESSION TAG SEQADV 3DZO GLY A 187 PDB 3DZO EXPRESSION TAG SEQADV 3DZO ARG A 188 PDB 3DZO EXPRESSION TAG SEQADV 3DZO GLU A 189 PDB 3DZO EXPRESSION TAG SEQADV 3DZO ASN A 190 PDB 3DZO EXPRESSION TAG SEQADV 3DZO LEU A 191 PDB 3DZO EXPRESSION TAG SEQADV 3DZO TYR A 192 PDB 3DZO EXPRESSION TAG SEQADV 3DZO PHE A 193 PDB 3DZO EXPRESSION TAG SEQADV 3DZO GLN A 194 PDB 3DZO EXPRESSION TAG SEQADV 3DZO GLY A 195 PDB 3DZO EXPRESSION TAG SEQRES 1 A 413 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 413 LEU TYR PHE GLN GLY PHE ARG GLY THR ASP PRO GLY ASP SEQRES 3 A 413 VAL VAL ILE GLU GLU LEU PHE ASN ARG ILE PRO GLN ALA SEQRES 4 A 413 ASN VAL ARG THR THR SER GLU TYR MET GLN SER ALA ALA SEQRES 5 A 413 ASP SER LEU VAL SER THR SER LEU TRP ASN THR GLY GLN SEQRES 6 A 413 PRO PHE ARG VAL GLU SER GLU LEU GLY GLU ARG PRO ARG SEQRES 7 A 413 THR LEU VAL ARG GLY THR VAL LEU GLY GLN GLU ASP PRO SEQRES 8 A 413 TYR ALA TYR LEU GLU ALA THR ASP GLN GLU THR GLY GLU SEQRES 9 A 413 SER PHE GLU VAL HIS VAL PRO TYR PHE THR GLU ARG PRO SEQRES 10 A 413 PRO SER ASN ALA ILE LYS GLN MET LYS GLU GLU VAL LEU SEQRES 11 A 413 ARG LEU ARG LEU LEU ARG GLY ILE LYS ASN GLN LYS GLN SEQRES 12 A 413 ALA LYS VAL HIS LEU ARG PHE ILE PHE PRO PHE ASP LEU SEQRES 13 A 413 VAL LYS ASP PRO GLN LYS LYS LYS MET ILE ARG VAL ARG SEQRES 14 A 413 LEU ASP GLU ARG ASP MET TRP VAL LEU SER ARG PHE PHE SEQRES 15 A 413 LEU TYR PRO ARG MET GLN SER ASN LEU GLN THR PHE GLY SEQRES 16 A 413 GLU VAL LEU LEU SER HIS SER SER THR HIS LYS SER LEU SEQRES 17 A 413 VAL HIS HIS ALA ARG LEU GLN LEU THR LEU GLN VAL ILE SEQRES 18 A 413 ARG LEU LEU ALA SER LEU HIS HIS TYR GLY LEU VAL HIS SEQRES 19 A 413 THR TYR LEU ARG PRO VAL ASP ILE VAL LEU ASP GLN ARG SEQRES 20 A 413 GLY GLY VAL PHE LEU THR GLY PHE GLU HIS LEU VAL ARG SEQRES 21 A 413 ASP GLY ALA SER ALA VAL SER PRO ILE GLY ARG GLY PHE SEQRES 22 A 413 ALA PRO PRO GLU THR THR ALA GLU ARG MET LEU PRO PHE SEQRES 23 A 413 GLY GLN HIS HIS PRO THR LEU MET THR PHE ALA PHE ASP SEQRES 24 A 413 THR TRP THR LEU GLY LEU ALA ILE TYR TRP ILE TRP CYS SEQRES 25 A 413 ALA ASP LEU PRO ASN THR ASP ASP ALA ALA LEU GLY GLY SEQRES 26 A 413 SER GLU TRP ILE PHE ARG SER CYS LYS ASN ILE PRO GLN SEQRES 27 A 413 PRO VAL ARG ALA LEU LEU GLU GLY PHE LEU ARG TYR PRO SEQRES 28 A 413 LYS GLU ASP ARG LEU LEU PRO LEU GLN ALA MET GLU THR SEQRES 29 A 413 PRO GLU TYR GLU GLN LEU ARG THR GLU LEU SER ALA ALA SEQRES 30 A 413 LEU PRO LEU TYR GLN THR ASP GLY GLU PRO THR ARG GLU SEQRES 31 A 413 GLY GLY ALA PRO PRO SER GLY THR SER GLN PRO ASP GLU SEQRES 32 A 413 ALA GLY ALA ALA GLU ALA VAL THR ALA ILE HET MG A 601 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *118(H2 O) HELIX 1 1 GLY A 202 ILE A 213 1 12 HELIX 2 2 PRO A 214 VAL A 218 5 5 HELIX 3 3 ALA A 228 THR A 235 1 8 HELIX 4 4 ILE A 299 ARG A 308 1 10 HELIX 5 5 LEU A 309 LEU A 312 5 4 HELIX 6 6 ASN A 317 LEU A 325 1 9 HELIX 7 7 LEU A 368 SER A 379 1 12 HELIX 8 8 HIS A 382 TYR A 407 1 26 HELIX 9 9 ARG A 415 VAL A 417 5 3 HELIX 10 10 GLY A 431 LEU A 435 5 5 HELIX 11 11 PRO A 452 MET A 460 1 9 HELIX 12 12 PHE A 463 HIS A 467 5 5 HELIX 13 13 THR A 472 ALA A 490 1 19 HELIX 14 14 ASP A 497 GLY A 501 5 5 HELIX 15 15 SER A 503 ARG A 508 5 6 HELIX 16 16 PRO A 514 LEU A 525 1 12 HELIX 17 17 PRO A 528 ARG A 532 5 5 HELIX 18 18 LEU A 534 MET A 539 1 6 HELIX 19 19 THR A 541 LEU A 555 1 15 HELIX 20 20 PRO A 556 GLN A 559 5 4 SHEET 1 A 7 PRO A 243 SER A 248 0 SHEET 2 A 7 ARG A 255 GLU A 266 -1 O ARG A 255 N VAL A 246 SHEET 3 A 7 TYR A 269 ASP A 276 -1 O TYR A 269 N GLU A 266 SHEET 4 A 7 SER A 282 PRO A 288 -1 O VAL A 287 N ALA A 270 SHEET 5 A 7 ARG A 357 PRO A 362 -1 O TYR A 361 N GLU A 284 SHEET 6 A 7 ASP A 332 LYS A 335 -1 N VAL A 334 O PHE A 358 SHEET 7 A 7 PRO A 243 SER A 248 -1 N GLU A 247 O LYS A 335 SHEET 1 B 3 SER A 366 ASN A 367 0 SHEET 2 B 3 ILE A 419 LEU A 421 -1 O LEU A 421 N SER A 366 SHEET 3 B 3 VAL A 427 LEU A 429 -1 O PHE A 428 N VAL A 420 SHEET 1 C 2 LEU A 409 VAL A 410 0 SHEET 2 C 2 VAL A 436 ARG A 437 -1 O VAL A 436 N VAL A 410 SHEET 1 D 2 ALA A 440 ALA A 442 0 SHEET 2 D 2 THR A 469 MET A 471 -1 O MET A 471 N ALA A 440 SSBOND 1 CYS A 489 CYS A 510 1555 1555 2.00 LINK O HOH A 113 MG MG A 601 1555 1555 2.08 LINK O HOH A 114 MG MG A 601 1555 1555 2.15 LINK O HOH A 115 MG MG A 601 1555 1555 1.83 LINK OE2 GLU A 433 MG MG A 601 1555 1555 2.23 CISPEP 1 ASP A 267 PRO A 268 0 -5.36 SITE 1 AC1 4 HOH A 113 HOH A 114 HOH A 115 GLU A 433 CRYST1 41.261 44.288 105.304 90.00 98.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024236 0.000000 0.003794 0.00000 SCALE2 0.000000 0.022579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009612 0.00000