data_3DZW # _entry.id 3DZW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DZW pdb_00003dzw 10.2210/pdb3dzw/pdb RCSB RCSB048698 ? ? WWPDB D_1000048698 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1NPL _pdbx_database_related.details 'Same protein, crystal form I' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3DZW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-07-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rizkallah, P.J.' 1 'Ozbey, S.' 2 'Sauerborn, M.K.' 3 # _citation.id primary _citation.title 'Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rizkallah, P.J.' 1 ? primary 'Ozbey, S.' 2 ? primary 'Sauerborn, M.K.' 3 ? # _cell.entry_id 3DZW _cell.length_a 72.003 _cell.length_b 102.011 _cell.length_c 74.366 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DZW _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Agglutinin 12209.545 2 ? ? ? ? 2 branched man 'alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose' 342.297 6 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 5 ? ? ? ? 4 water nat water 18.015 295 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 3alpha-alpha-mannobiose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DNILYSGETLSPGEFLNNGRYVFIMQEDCNLVLYDVDKPIWATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGE NGNYVCVLQKDRNVVIYGTARWATGTNIH ; _entity_poly.pdbx_seq_one_letter_code_can ;DNILYSGETLSPGEFLNNGRYVFIMQEDCNLVLYDVDKPIWATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGE NGNYVCVLQKDRNVVIYGTARWATGTNIH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ASN n 1 3 ILE n 1 4 LEU n 1 5 TYR n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 THR n 1 10 LEU n 1 11 SER n 1 12 PRO n 1 13 GLY n 1 14 GLU n 1 15 PHE n 1 16 LEU n 1 17 ASN n 1 18 ASN n 1 19 GLY n 1 20 ARG n 1 21 TYR n 1 22 VAL n 1 23 PHE n 1 24 ILE n 1 25 MET n 1 26 GLN n 1 27 GLU n 1 28 ASP n 1 29 CYS n 1 30 ASN n 1 31 LEU n 1 32 VAL n 1 33 LEU n 1 34 TYR n 1 35 ASP n 1 36 VAL n 1 37 ASP n 1 38 LYS n 1 39 PRO n 1 40 ILE n 1 41 TRP n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 THR n 1 46 GLY n 1 47 GLY n 1 48 LEU n 1 49 ASP n 1 50 ARG n 1 51 ARG n 1 52 CYS n 1 53 HIS n 1 54 LEU n 1 55 SER n 1 56 MET n 1 57 GLN n 1 58 SER n 1 59 ASP n 1 60 GLY n 1 61 ASN n 1 62 LEU n 1 63 VAL n 1 64 VAL n 1 65 TYR n 1 66 SER n 1 67 PRO n 1 68 ARG n 1 69 ASN n 1 70 ASN n 1 71 PRO n 1 72 ILE n 1 73 TRP n 1 74 ALA n 1 75 SER n 1 76 ASN n 1 77 THR n 1 78 GLY n 1 79 GLY n 1 80 GLU n 1 81 ASN n 1 82 GLY n 1 83 ASN n 1 84 TYR n 1 85 VAL n 1 86 CYS n 1 87 VAL n 1 88 LEU n 1 89 GLN n 1 90 LYS n 1 91 ASP n 1 92 ARG n 1 93 ASN n 1 94 VAL n 1 95 VAL n 1 96 ILE n 1 97 TYR n 1 98 GLY n 1 99 THR n 1 100 ALA n 1 101 ARG n 1 102 TRP n 1 103 ALA n 1 104 THR n 1 105 GLY n 1 106 THR n 1 107 ASN n 1 108 ILE n 1 109 HIS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Narcissus pseudonarcissus' _entity_src_nat.pdbx_ncbi_taxonomy_id 39639 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain 'Dutch Master cultivar' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details bulb # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3DZW _struct_ref.pdbx_db_accession 3DZW _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;DNILYSGETLSPGEFLNNGRYVFIMQEDCNLVLYDVDKPIWATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGE NGNYVCVLQKDRNVVIYGTARWATGTNIH ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DZW A 1 ? 109 ? 3DZW 1 ? 109 ? 1 109 2 1 3DZW B 1 ? 109 ? 3DZW 1 ? 109 ? 1 109 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3DZW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10 mg/ml in Phosphate buffered saline, containing up to 20mM beta-1,3 mannobiose, pH 8.0, VAPOR DIFFUSION, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 277 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 1996-07-01 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI III SAGITALLY FOCUSED' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.88 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength 0.88 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3DZW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 21.031 _reflns.d_resolution_high 1.700 _reflns.number_obs 30200 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.07700 _reflns.pdbx_Rsym_value 0.07700 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.000 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.79 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.38200 _reflns_shell.pdbx_Rsym_value 0.38200 _reflns_shell.meanI_over_sigI_obs 1.800 _reflns_shell.pdbx_redundancy 3.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DZW _refine.ls_number_reflns_obs 30180 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 21.031 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 98.96 _refine.ls_R_factor_obs 0.18823 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18684 _refine.ls_R_factor_R_free 0.21279 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1523 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 18.660 _refine.aniso_B[1][1] -0.70 _refine.aniso_B[2][2] -0.78 _refine.aniso_B[3][3] 1.48 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. The Ramachandran plot outliers are a feature of this structure, dictated by the tetrameric oligomerisation, driven by strong hydrophobicity which causes the deviation. ; _refine.pdbx_starting_model 'PDB ENTRY 1NPL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.110 _refine.pdbx_overall_ESU_R_Free 0.104 _refine.overall_SU_ML 0.076 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.220 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1716 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 163 _refine_hist.number_atoms_solvent 295 _refine_hist.number_atoms_total 2174 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 21.031 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.021 ? 2019 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 1291 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.544 2.022 ? 2787 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.461 3.001 ? 3109 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 2.606 5.000 ? 238 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 23.490 24.105 ? 95 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 7.953 15.000 ? 287 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5.777 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.095 0.200 ? 333 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 2181 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 396 'X-RAY DIFFRACTION' ? r_nbd_refined 0.157 0.300 ? 305 'X-RAY DIFFRACTION' ? r_nbd_other 0.175 0.300 ? 1334 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.158 0.500 ? 988 'X-RAY DIFFRACTION' ? r_nbtor_other 0.096 0.500 ? 885 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.145 0.500 ? 266 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.013 0.500 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.067 0.300 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.172 0.300 ? 71 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.289 0.500 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.910 2.000 ? 1488 'X-RAY DIFFRACTION' ? r_mcbond_other 0.540 2.000 ? 470 'X-RAY DIFFRACTION' ? r_mcangle_it 2.199 3.000 ? 1859 'X-RAY DIFFRACTION' ? r_scbond_it 3.238 4.000 ? 1017 'X-RAY DIFFRACTION' ? r_scangle_it 4.649 6.000 ? 928 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 B 1399 0.38 0.50 'medium positional' 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 1 B 1399 0.49 2.00 'medium thermal' 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 2080 _refine_ls_shell.R_factor_R_work 0.254 _refine_ls_shell.percent_reflns_obs 99.01 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 B 1 2 A 1 # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 B ASP 1 . B HIS 109 . B ASP 1 B HIS 109 4 ? 1 2 1 A ASP 1 . A HIS 109 . A ASP 1 A HIS 109 4 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3DZW _struct.title 'Structure of Narcissus pseudonarcissus lectin complex with Mannobiose at 1.7 A resolution, form II' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DZW _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'LECTIN, AGGLUTININ, MANNOBIOSE, MANNOSE-ALPHA1, 3-MANNOSE, DAFFODIL, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 4 ? # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 29 A CYS 52 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf2 disulf ? ? B CYS 29 SG A ? ? 1_555 B CYS 52 SG A ? B CYS 29 B CYS 52 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? B CYS 29 SG B ? ? 1_555 B CYS 52 SG B ? B CYS 29 B CYS 52 1_555 ? ? ? ? ? ? ? 2.016 ? ? covale1 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 1 C MAN 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale2 covale both ? D MAN . O3 ? ? ? 1_555 D MAN . C1 ? ? D MAN 1 D MAN 2 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale3 covale both ? E MAN . O3 ? ? ? 1_555 E MAN . C1 ? ? E MAN 1 E MAN 2 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale4 covale both ? F MAN . O3 ? ? ? 1_555 F MAN . C1 ? ? F MAN 1 F MAN 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale5 covale both ? G MAN . O3 ? ? ? 1_555 G MAN . C1 ? ? G MAN 1 G MAN 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale6 covale both ? H MAN . O3 ? ? ? 1_555 H MAN . C1 ? ? H MAN 1 H MAN 2 1_555 ? ? ? ? ? ? ? 1.436 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 98 A . ? GLY 98 A THR 99 A ? THR 99 A 1 0.26 2 GLY 98 A . ? GLY 98 A THR 99 A ? THR 99 A 1 0.10 3 GLY 98 B . ? GLY 98 B THR 99 B ? THR 99 B 1 0.23 4 GLY 98 B . ? GLY 98 B THR 99 B ? THR 99 B 1 0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? D ? 3 ? E ? 4 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 3 ? TYR A 5 ? ILE A 3 TYR A 5 A 2 TYR A 84 ? LEU A 88 ? TYR A 84 LEU A 88 A 3 VAL A 94 ? GLY A 98 ? VAL A 94 GLY A 98 B 1 GLU A 8 ? LEU A 10 ? GLU A 8 LEU A 10 B 2 HIS A 53 ? MET A 56 ? HIS A 53 MET A 56 B 3 LEU A 62 ? TYR A 65 ? LEU A 62 TYR A 65 B 4 PRO A 71 ? ALA A 74 ? PRO A 71 ALA A 74 C 1 PHE A 15 ? ASN A 18 ? PHE A 15 ASN A 18 C 2 TYR A 21 ? MET A 25 ? TYR A 21 MET A 25 C 3 LEU A 31 ? ASP A 35 ? LEU A 31 ASP A 35 C 4 LYS A 38 ? ALA A 42 ? LYS A 38 ALA A 42 D 1 ILE B 3 ? TYR B 5 ? ILE B 3 TYR B 5 D 2 TYR B 84 ? LEU B 88 ? TYR B 84 LEU B 88 D 3 VAL B 94 ? GLY B 98 ? VAL B 94 GLY B 98 E 1 GLU B 8 ? LEU B 10 ? GLU B 8 LEU B 10 E 2 HIS B 53 ? MET B 56 ? HIS B 53 MET B 56 E 3 LEU B 62 ? TYR B 65 ? LEU B 62 TYR B 65 E 4 PRO B 71 ? ALA B 74 ? PRO B 71 ALA B 74 F 1 PHE B 15 ? ASN B 18 ? PHE B 15 ASN B 18 F 2 TYR B 21 ? MET B 25 ? TYR B 21 MET B 25 F 3 LEU B 31 ? ASP B 35 ? LEU B 31 ASP B 35 F 4 LYS B 38 ? ALA B 42 ? LYS B 38 ALA B 42 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 4 ? N LEU A 4 O CYS A 86 ? O CYS A 86 A 2 3 N VAL A 87 ? N VAL A 87 O VAL A 95 ? O VAL A 95 B 1 2 N LEU A 10 ? N LEU A 10 O LEU A 54 ? O LEU A 54 B 2 3 N SER A 55 ? N SER A 55 O VAL A 63 ? O VAL A 63 B 3 4 N VAL A 64 ? N VAL A 64 O ILE A 72 ? O ILE A 72 C 1 2 N LEU A 16 ? N LEU A 16 O PHE A 23 ? O PHE A 23 C 2 3 N VAL A 22 ? N VAL A 22 O TYR A 34 ? O TYR A 34 C 3 4 N LEU A 33 ? N LEU A 33 O ILE A 40 ? O ILE A 40 D 1 2 N LEU B 4 ? N LEU B 4 O CYS B 86 ? O CYS B 86 D 2 3 N VAL B 87 ? N VAL B 87 O VAL B 95 ? O VAL B 95 E 1 2 N LEU B 10 ? N LEU B 10 O LEU B 54 ? O LEU B 54 E 2 3 N SER B 55 ? N SER B 55 O VAL B 63 ? O VAL B 63 E 3 4 N VAL B 64 ? N VAL B 64 O ILE B 72 ? O ILE B 72 F 1 2 N LEU B 16 ? N LEU B 16 O PHE B 23 ? O PHE B 23 F 2 3 N VAL B 22 ? N VAL B 22 O TYR B 34 ? O TYR B 34 F 3 4 N LEU B 33 ? N LEU B 33 O ILE B 40 ? O ILE B 40 # _atom_sites.entry_id 3DZW _atom_sites.fract_transf_matrix[1][1] 0.013888 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009803 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013447 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 CYS 52 52 52 CYS CYS A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 TRP 73 73 73 TRP TRP A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 TRP 102 102 102 TRP TRP A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 HIS 109 109 109 HIS HIS A . n B 1 1 ASP 1 1 1 ASP ASP B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 TYR 5 5 5 TYR TYR B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 THR 9 9 9 THR THR B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 PHE 15 15 15 PHE PHE B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 ASN 17 17 17 ASN ASN B . n B 1 18 ASN 18 18 18 ASN ASN B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 VAL 22 22 22 VAL VAL B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 MET 25 25 25 MET MET B . n B 1 26 GLN 26 26 26 GLN GLN B . n B 1 27 GLU 27 27 27 GLU GLU B . n B 1 28 ASP 28 28 28 ASP ASP B . n B 1 29 CYS 29 29 29 CYS CYS B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 TYR 34 34 34 TYR TYR B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 ASP 37 37 37 ASP ASP B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 TRP 41 41 41 TRP TRP B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 ASN 44 44 44 ASN ASN B . n B 1 45 THR 45 45 45 THR THR B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 LEU 48 48 48 LEU LEU B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 ARG 50 50 50 ARG ARG B . n B 1 51 ARG 51 51 51 ARG ARG B . n B 1 52 CYS 52 52 52 CYS CYS B . n B 1 53 HIS 53 53 53 HIS HIS B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 MET 56 56 56 MET MET B . n B 1 57 GLN 57 57 57 GLN GLN B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 ASP 59 59 59 ASP ASP B . n B 1 60 GLY 60 60 60 GLY GLY B . n B 1 61 ASN 61 61 61 ASN ASN B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 TYR 65 65 65 TYR TYR B . n B 1 66 SER 66 66 66 SER SER B . n B 1 67 PRO 67 67 67 PRO PRO B . n B 1 68 ARG 68 68 68 ARG ARG B . n B 1 69 ASN 69 69 69 ASN ASN B . n B 1 70 ASN 70 70 70 ASN ASN B . n B 1 71 PRO 71 71 71 PRO PRO B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 TRP 73 73 73 TRP TRP B . n B 1 74 ALA 74 74 74 ALA ALA B . n B 1 75 SER 75 75 75 SER SER B . n B 1 76 ASN 76 76 76 ASN ASN B . n B 1 77 THR 77 77 77 THR THR B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 GLU 80 80 80 GLU GLU B . n B 1 81 ASN 81 81 81 ASN ASN B . n B 1 82 GLY 82 82 82 GLY GLY B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 TYR 84 84 84 TYR TYR B . n B 1 85 VAL 85 85 85 VAL VAL B . n B 1 86 CYS 86 86 86 CYS CYS B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 GLN 89 89 89 GLN GLN B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 ASP 91 91 91 ASP ASP B . n B 1 92 ARG 92 92 92 ARG ARG B . n B 1 93 ASN 93 93 93 ASN ASN B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 ILE 96 96 96 ILE ILE B . n B 1 97 TYR 97 97 97 TYR TYR B . n B 1 98 GLY 98 98 98 GLY GLY B . n B 1 99 THR 99 99 99 THR THR B . n B 1 100 ALA 100 100 100 ALA ALA B . n B 1 101 ARG 101 101 101 ARG ARG B . n B 1 102 TRP 102 102 102 TRP TRP B . n B 1 103 ALA 103 103 103 ALA ALA B . n B 1 104 THR 104 104 104 THR THR B . n B 1 105 GLY 105 105 105 GLY GLY B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 ASN 107 107 107 ASN ASN B . n B 1 108 ILE 108 108 108 ILE ILE B . n B 1 109 HIS 109 109 109 HIS HIS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PO4 1 119 119 PO4 PO4 A . J 3 PO4 1 117 117 PO4 PO4 A . K 3 PO4 1 118 118 PO4 PO4 A . L 3 PO4 1 117 117 PO4 PO4 B . M 3 PO4 1 118 118 PO4 PO4 B . N 4 HOH 1 120 1 HOH HOH A . N 4 HOH 2 121 7 HOH HOH A . N 4 HOH 3 122 9 HOH HOH A . N 4 HOH 4 123 10 HOH HOH A . N 4 HOH 5 124 13 HOH HOH A . N 4 HOH 6 125 16 HOH HOH A . N 4 HOH 7 126 17 HOH HOH A . N 4 HOH 8 127 19 HOH HOH A . N 4 HOH 9 128 21 HOH HOH A . N 4 HOH 10 129 23 HOH HOH A . N 4 HOH 11 130 26 HOH HOH A . N 4 HOH 12 131 28 HOH HOH A . N 4 HOH 13 132 30 HOH HOH A . N 4 HOH 14 133 31 HOH HOH A . N 4 HOH 15 134 34 HOH HOH A . N 4 HOH 16 135 36 HOH HOH A . N 4 HOH 17 136 38 HOH HOH A . N 4 HOH 18 137 40 HOH HOH A . N 4 HOH 19 138 43 HOH HOH A . N 4 HOH 20 139 44 HOH HOH A . N 4 HOH 21 140 46 HOH HOH A . N 4 HOH 22 141 49 HOH HOH A . N 4 HOH 23 142 50 HOH HOH A . N 4 HOH 24 143 51 HOH HOH A . N 4 HOH 25 144 52 HOH HOH A . N 4 HOH 26 145 53 HOH HOH A . N 4 HOH 27 146 54 HOH HOH A . N 4 HOH 28 147 58 HOH HOH A . N 4 HOH 29 148 59 HOH HOH A . N 4 HOH 30 149 63 HOH HOH A . N 4 HOH 31 150 67 HOH HOH A . N 4 HOH 32 151 70 HOH HOH A . N 4 HOH 33 152 71 HOH HOH A . N 4 HOH 34 153 72 HOH HOH A . N 4 HOH 35 154 76 HOH HOH A . N 4 HOH 36 155 77 HOH HOH A . N 4 HOH 37 156 81 HOH HOH A . N 4 HOH 38 157 83 HOH HOH A . N 4 HOH 39 158 86 HOH HOH A . N 4 HOH 40 159 87 HOH HOH A . N 4 HOH 41 160 88 HOH HOH A . N 4 HOH 42 161 89 HOH HOH A . N 4 HOH 43 162 90 HOH HOH A . N 4 HOH 44 163 91 HOH HOH A . N 4 HOH 45 164 92 HOH HOH A . N 4 HOH 46 165 93 HOH HOH A . N 4 HOH 47 166 95 HOH HOH A . N 4 HOH 48 167 96 HOH HOH A . N 4 HOH 49 168 97 HOH HOH A . N 4 HOH 50 169 98 HOH HOH A . N 4 HOH 51 170 102 HOH HOH A . N 4 HOH 52 171 106 HOH HOH A . N 4 HOH 53 172 108 HOH HOH A . N 4 HOH 54 173 109 HOH HOH A . N 4 HOH 55 174 111 HOH HOH A . N 4 HOH 56 175 112 HOH HOH A . N 4 HOH 57 176 114 HOH HOH A . N 4 HOH 58 177 115 HOH HOH A . N 4 HOH 59 178 116 HOH HOH A . N 4 HOH 60 179 119 HOH HOH A . N 4 HOH 61 180 120 HOH HOH A . N 4 HOH 62 181 121 HOH HOH A . N 4 HOH 63 182 122 HOH HOH A . N 4 HOH 64 183 124 HOH HOH A . N 4 HOH 65 184 125 HOH HOH A . N 4 HOH 66 185 126 HOH HOH A . N 4 HOH 67 186 128 HOH HOH A . N 4 HOH 68 187 129 HOH HOH A . N 4 HOH 69 188 133 HOH HOH A . N 4 HOH 70 189 135 HOH HOH A . N 4 HOH 71 190 137 HOH HOH A . N 4 HOH 72 191 138 HOH HOH A . N 4 HOH 73 192 139 HOH HOH A . N 4 HOH 74 193 143 HOH HOH A . N 4 HOH 75 194 144 HOH HOH A . N 4 HOH 76 195 145 HOH HOH A . N 4 HOH 77 196 146 HOH HOH A . N 4 HOH 78 197 148 HOH HOH A . N 4 HOH 79 198 149 HOH HOH A . N 4 HOH 80 199 152 HOH HOH A . N 4 HOH 81 200 153 HOH HOH A . N 4 HOH 82 201 155 HOH HOH A . N 4 HOH 83 202 157 HOH HOH A . N 4 HOH 84 203 158 HOH HOH A . N 4 HOH 85 204 159 HOH HOH A . N 4 HOH 86 205 160 HOH HOH A . N 4 HOH 87 206 162 HOH HOH A . N 4 HOH 88 207 165 HOH HOH A . N 4 HOH 89 208 166 HOH HOH A . N 4 HOH 90 209 168 HOH HOH A . N 4 HOH 91 210 169 HOH HOH A . N 4 HOH 92 211 170 HOH HOH A . N 4 HOH 93 212 172 HOH HOH A . N 4 HOH 94 213 173 HOH HOH A . N 4 HOH 95 214 174 HOH HOH A . N 4 HOH 96 215 175 HOH HOH A . N 4 HOH 97 216 176 HOH HOH A . N 4 HOH 98 217 177 HOH HOH A . N 4 HOH 99 218 180 HOH HOH A . N 4 HOH 100 219 185 HOH HOH A . N 4 HOH 101 220 186 HOH HOH A . N 4 HOH 102 221 191 HOH HOH A . N 4 HOH 103 222 192 HOH HOH A . N 4 HOH 104 223 195 HOH HOH A . N 4 HOH 105 224 196 HOH HOH A . N 4 HOH 106 225 198 HOH HOH A . N 4 HOH 107 226 203 HOH HOH A . N 4 HOH 108 227 205 HOH HOH A . N 4 HOH 109 228 210 HOH HOH A . N 4 HOH 110 229 211 HOH HOH A . N 4 HOH 111 230 214 HOH HOH A . N 4 HOH 112 231 215 HOH HOH A . N 4 HOH 113 232 218 HOH HOH A . N 4 HOH 114 233 224 HOH HOH A . N 4 HOH 115 234 225 HOH HOH A . N 4 HOH 116 235 227 HOH HOH A . N 4 HOH 117 236 228 HOH HOH A . N 4 HOH 118 237 233 HOH HOH A . N 4 HOH 119 238 235 HOH HOH A . N 4 HOH 120 239 236 HOH HOH A . N 4 HOH 121 240 240 HOH HOH A . N 4 HOH 122 241 242 HOH HOH A . N 4 HOH 123 242 245 HOH HOH A . N 4 HOH 124 243 247 HOH HOH A . N 4 HOH 125 244 250 HOH HOH A . N 4 HOH 126 245 251 HOH HOH A . N 4 HOH 127 246 253 HOH HOH A . N 4 HOH 128 247 254 HOH HOH A . N 4 HOH 129 248 255 HOH HOH A . N 4 HOH 130 249 257 HOH HOH A . N 4 HOH 131 250 260 HOH HOH A . N 4 HOH 132 251 263 HOH HOH A . N 4 HOH 133 252 265 HOH HOH A . N 4 HOH 134 253 267 HOH HOH A . N 4 HOH 135 254 268 HOH HOH A . N 4 HOH 136 255 270 HOH HOH A . N 4 HOH 137 256 271 HOH HOH A . N 4 HOH 138 257 274 HOH HOH A . N 4 HOH 139 258 276 HOH HOH A . N 4 HOH 140 259 277 HOH HOH A . N 4 HOH 141 260 278 HOH HOH A . N 4 HOH 142 261 279 HOH HOH A . N 4 HOH 143 262 280 HOH HOH A . N 4 HOH 144 263 281 HOH HOH A . N 4 HOH 145 264 283 HOH HOH A . N 4 HOH 146 265 285 HOH HOH A . N 4 HOH 147 266 286 HOH HOH A . N 4 HOH 148 267 290 HOH HOH A . N 4 HOH 149 268 292 HOH HOH A . N 4 HOH 150 269 293 HOH HOH A . N 4 HOH 151 270 294 HOH HOH A . N 4 HOH 152 271 189 HOH HOH A . O 4 HOH 1 240 238 HOH HOH B . O 4 HOH 2 241 291 HOH HOH B . O 4 HOH 3 242 2 HOH HOH B . O 4 HOH 4 243 3 HOH HOH B . O 4 HOH 5 244 4 HOH HOH B . O 4 HOH 6 245 5 HOH HOH B . O 4 HOH 7 246 6 HOH HOH B . O 4 HOH 8 247 8 HOH HOH B . O 4 HOH 9 248 11 HOH HOH B . O 4 HOH 10 249 12 HOH HOH B . O 4 HOH 11 250 14 HOH HOH B . O 4 HOH 12 251 15 HOH HOH B . O 4 HOH 13 252 18 HOH HOH B . O 4 HOH 14 253 20 HOH HOH B . O 4 HOH 15 254 22 HOH HOH B . O 4 HOH 16 255 24 HOH HOH B . O 4 HOH 17 256 25 HOH HOH B . O 4 HOH 18 257 27 HOH HOH B . O 4 HOH 19 258 29 HOH HOH B . O 4 HOH 20 259 32 HOH HOH B . O 4 HOH 21 260 33 HOH HOH B . O 4 HOH 22 261 35 HOH HOH B . O 4 HOH 23 262 37 HOH HOH B . O 4 HOH 24 263 39 HOH HOH B . O 4 HOH 25 264 41 HOH HOH B . O 4 HOH 26 265 42 HOH HOH B . O 4 HOH 27 266 45 HOH HOH B . O 4 HOH 28 267 47 HOH HOH B . O 4 HOH 29 268 48 HOH HOH B . O 4 HOH 30 269 55 HOH HOH B . O 4 HOH 31 270 56 HOH HOH B . O 4 HOH 32 271 57 HOH HOH B . O 4 HOH 33 272 60 HOH HOH B . O 4 HOH 34 273 61 HOH HOH B . O 4 HOH 35 274 62 HOH HOH B . O 4 HOH 36 275 64 HOH HOH B . O 4 HOH 37 276 65 HOH HOH B . O 4 HOH 38 277 66 HOH HOH B . O 4 HOH 39 278 68 HOH HOH B . O 4 HOH 40 279 69 HOH HOH B . O 4 HOH 41 280 73 HOH HOH B . O 4 HOH 42 281 74 HOH HOH B . O 4 HOH 43 282 75 HOH HOH B . O 4 HOH 44 283 78 HOH HOH B . O 4 HOH 45 284 79 HOH HOH B . O 4 HOH 46 285 80 HOH HOH B . O 4 HOH 47 286 82 HOH HOH B . O 4 HOH 48 287 84 HOH HOH B . O 4 HOH 49 288 85 HOH HOH B . O 4 HOH 50 289 94 HOH HOH B . O 4 HOH 51 290 99 HOH HOH B . O 4 HOH 52 291 100 HOH HOH B . O 4 HOH 53 292 101 HOH HOH B . O 4 HOH 54 293 103 HOH HOH B . O 4 HOH 55 294 104 HOH HOH B . O 4 HOH 56 295 105 HOH HOH B . O 4 HOH 57 296 107 HOH HOH B . O 4 HOH 58 297 110 HOH HOH B . O 4 HOH 59 298 113 HOH HOH B . O 4 HOH 60 299 117 HOH HOH B . O 4 HOH 61 300 118 HOH HOH B . O 4 HOH 62 301 123 HOH HOH B . O 4 HOH 63 302 127 HOH HOH B . O 4 HOH 64 303 130 HOH HOH B . O 4 HOH 65 304 131 HOH HOH B . O 4 HOH 66 305 132 HOH HOH B . O 4 HOH 67 306 134 HOH HOH B . O 4 HOH 68 307 136 HOH HOH B . O 4 HOH 69 308 140 HOH HOH B . O 4 HOH 70 309 141 HOH HOH B . O 4 HOH 71 310 142 HOH HOH B . O 4 HOH 72 311 147 HOH HOH B . O 4 HOH 73 312 150 HOH HOH B . O 4 HOH 74 313 151 HOH HOH B . O 4 HOH 75 314 154 HOH HOH B . O 4 HOH 76 315 156 HOH HOH B . O 4 HOH 77 316 161 HOH HOH B . O 4 HOH 78 317 163 HOH HOH B . O 4 HOH 79 318 164 HOH HOH B . O 4 HOH 80 319 167 HOH HOH B . O 4 HOH 81 320 171 HOH HOH B . O 4 HOH 82 321 178 HOH HOH B . O 4 HOH 83 322 179 HOH HOH B . O 4 HOH 84 323 181 HOH HOH B . O 4 HOH 85 324 182 HOH HOH B . O 4 HOH 86 325 183 HOH HOH B . O 4 HOH 87 326 184 HOH HOH B . O 4 HOH 88 327 187 HOH HOH B . O 4 HOH 89 328 188 HOH HOH B . O 4 HOH 90 329 190 HOH HOH B . O 4 HOH 91 330 193 HOH HOH B . O 4 HOH 92 331 194 HOH HOH B . O 4 HOH 93 332 197 HOH HOH B . O 4 HOH 94 333 199 HOH HOH B . O 4 HOH 95 334 200 HOH HOH B . O 4 HOH 96 335 201 HOH HOH B . O 4 HOH 97 336 202 HOH HOH B . O 4 HOH 98 337 204 HOH HOH B . O 4 HOH 99 338 206 HOH HOH B . O 4 HOH 100 339 207 HOH HOH B . O 4 HOH 101 340 208 HOH HOH B . O 4 HOH 102 341 209 HOH HOH B . O 4 HOH 103 342 212 HOH HOH B . O 4 HOH 104 343 213 HOH HOH B . O 4 HOH 105 344 216 HOH HOH B . O 4 HOH 106 345 217 HOH HOH B . O 4 HOH 107 346 219 HOH HOH B . O 4 HOH 108 347 220 HOH HOH B . O 4 HOH 109 348 221 HOH HOH B . O 4 HOH 110 349 222 HOH HOH B . O 4 HOH 111 350 223 HOH HOH B . O 4 HOH 112 351 226 HOH HOH B . O 4 HOH 113 352 229 HOH HOH B . O 4 HOH 114 353 230 HOH HOH B . O 4 HOH 115 354 231 HOH HOH B . O 4 HOH 116 355 232 HOH HOH B . O 4 HOH 117 356 234 HOH HOH B . O 4 HOH 118 357 237 HOH HOH B . O 4 HOH 119 358 239 HOH HOH B . O 4 HOH 120 359 241 HOH HOH B . O 4 HOH 121 360 243 HOH HOH B . O 4 HOH 122 361 244 HOH HOH B . O 4 HOH 123 362 246 HOH HOH B . O 4 HOH 124 363 248 HOH HOH B . O 4 HOH 125 364 249 HOH HOH B . O 4 HOH 126 365 252 HOH HOH B . O 4 HOH 127 366 256 HOH HOH B . O 4 HOH 128 367 258 HOH HOH B . O 4 HOH 129 368 259 HOH HOH B . O 4 HOH 130 369 261 HOH HOH B . O 4 HOH 131 370 262 HOH HOH B . O 4 HOH 132 371 264 HOH HOH B . O 4 HOH 133 372 266 HOH HOH B . O 4 HOH 134 373 269 HOH HOH B . O 4 HOH 135 374 272 HOH HOH B . O 4 HOH 136 375 273 HOH HOH B . O 4 HOH 137 376 275 HOH HOH B . O 4 HOH 138 377 282 HOH HOH B . O 4 HOH 139 378 284 HOH HOH B . O 4 HOH 140 379 287 HOH HOH B . O 4 HOH 141 380 288 HOH HOH B . O 4 HOH 142 381 289 HOH HOH B . O 4 HOH 143 382 295 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900112 _pdbx_molecule_features.name 3alpha-alpha-mannobiose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Metabolism _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900112 C 2 PRD_900112 D 3 PRD_900112 E 4 PRD_900112 F 5 PRD_900112 G 6 PRD_900112 H # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,D,E,I,J,K,N 1 3,4 B,F,G,H,L,M,O 2 1,2 A,C,D,E,I,J,K,N 3 1,5 B,F,G,H,L,M,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 5350 ? 2 MORE -26 ? 2 'SSA (A^2)' 10340 ? 3 'ABSA (A^2)' 5590 ? 3 MORE -20 ? 3 'SSA (A^2)' 11450 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 72.0030000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 37.1830000000 3 'crystal symmetry operation' 2_664 -x+1,-y+1,z-1/2 -1.0000000000 0.0000000000 0.0000000000 72.0030000000 0.0000000000 -1.0000000000 0.0000000000 102.0110000000 0.0000000000 0.0000000000 1.0000000000 -37.1830000000 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 102.0110000000 0.0000000000 0.0000000000 -1.0000000000 74.3660000000 5 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1.0000000000 0.0000000000 0.0000000000 72.0030000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 111.5490000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-08-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' entity_name_com 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_molecule_features 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_struct_assembly_gen 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen 19 4 'Structure model' chem_comp 20 4 'Structure model' chem_comp_atom 21 4 'Structure model' chem_comp_bond 22 4 'Structure model' database_2 23 4 'Structure model' pdbx_initial_refinement_model 24 4 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_entity.formula_weight' 17 3 'Structure model' '_entity.pdbx_description' 18 3 'Structure model' '_entity.pdbx_number_of_molecules' 19 3 'Structure model' '_entity.type' 20 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_chem_comp.pdbx_synonyms' 29 4 'Structure model' '_database_2.pdbx_DOI' 30 4 'Structure model' '_database_2.pdbx_database_accession' 31 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 32 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 25.5953 38.4255 25.2583 0.0015 -0.0122 -0.0154 -0.0176 -0.0070 -0.0074 0.8710 0.3372 0.2395 0.2635 -0.2571 -0.0995 0.0576 -0.0415 0.0253 0.0472 -0.0679 0.0621 0.0107 0.0142 0.0103 'X-RAY DIFFRACTION' 2 ? refined 25.7332 35.6822 62.6282 0.0062 -0.0024 -0.0215 -0.0268 -0.0114 0.0112 1.0755 0.6524 0.1410 0.0904 -0.1907 0.0924 0.0817 -0.0878 -0.1094 0.0495 -0.0867 0.0847 0.0138 0.0078 0.0050 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 109 A 109 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 B 1 B 109 B 109 ? 'X-RAY DIFFRACTION' ? # _pdbx_phasing_MR.entry_id 3DZW _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body 0.363 _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.835 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic 0.684 _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 1 AMoRE . ? program 'Jorge Navaza' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 244 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 364 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_656 _pdbx_validate_symm_contact.dist 0.94 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 18 ? ? -162.32 98.75 2 1 VAL A 36 ? ? 63.57 -111.77 3 1 ARG A 92 ? ? 83.17 1.69 4 1 VAL B 36 ? ? 62.69 -111.78 5 1 ARG B 92 ? ? 81.18 1.44 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MAN C1 C N S 230 MAN C2 C N S 231 MAN C3 C N S 232 MAN C4 C N S 233 MAN C5 C N R 234 MAN C6 C N N 235 MAN O1 O N N 236 MAN O2 O N N 237 MAN O3 O N N 238 MAN O4 O N N 239 MAN O5 O N N 240 MAN O6 O N N 241 MAN H1 H N N 242 MAN H2 H N N 243 MAN H3 H N N 244 MAN H4 H N N 245 MAN H5 H N N 246 MAN H61 H N N 247 MAN H62 H N N 248 MAN HO1 H N N 249 MAN HO2 H N N 250 MAN HO3 H N N 251 MAN HO4 H N N 252 MAN HO6 H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 PHE N N N N 274 PHE CA C N S 275 PHE C C N N 276 PHE O O N N 277 PHE CB C N N 278 PHE CG C Y N 279 PHE CD1 C Y N 280 PHE CD2 C Y N 281 PHE CE1 C Y N 282 PHE CE2 C Y N 283 PHE CZ C Y N 284 PHE OXT O N N 285 PHE H H N N 286 PHE H2 H N N 287 PHE HA H N N 288 PHE HB2 H N N 289 PHE HB3 H N N 290 PHE HD1 H N N 291 PHE HD2 H N N 292 PHE HE1 H N N 293 PHE HE2 H N N 294 PHE HZ H N N 295 PHE HXT H N N 296 PO4 P P N N 297 PO4 O1 O N N 298 PO4 O2 O N N 299 PO4 O3 O N N 300 PO4 O4 O N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MAN C1 C2 sing N N 218 MAN C1 O1 sing N N 219 MAN C1 O5 sing N N 220 MAN C1 H1 sing N N 221 MAN C2 C3 sing N N 222 MAN C2 O2 sing N N 223 MAN C2 H2 sing N N 224 MAN C3 C4 sing N N 225 MAN C3 O3 sing N N 226 MAN C3 H3 sing N N 227 MAN C4 C5 sing N N 228 MAN C4 O4 sing N N 229 MAN C4 H4 sing N N 230 MAN C5 C6 sing N N 231 MAN C5 O5 sing N N 232 MAN C5 H5 sing N N 233 MAN C6 O6 sing N N 234 MAN C6 H61 sing N N 235 MAN C6 H62 sing N N 236 MAN O1 HO1 sing N N 237 MAN O2 HO2 sing N N 238 MAN O3 HO3 sing N N 239 MAN O4 HO4 sing N N 240 MAN O6 HO6 sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PO4 P O1 doub N N 284 PO4 P O2 sing N N 285 PO4 P O3 sing N N 286 PO4 P O4 sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 MAN 1 C MAN 1 A MAN 111 n C 2 MAN 2 C MAN 2 A MAN 112 n D 2 MAN 1 D MAN 1 A MAN 113 n D 2 MAN 2 D MAN 2 A MAN 114 n E 2 MAN 1 E MAN 1 A MAN 115 n E 2 MAN 2 E MAN 2 A MAN 116 n F 2 MAN 1 F MAN 1 B MAN 111 n F 2 MAN 2 F MAN 2 B MAN 112 n G 2 MAN 1 G MAN 1 B MAN 113 n G 2 MAN 2 G MAN 2 B MAN 114 n H 2 MAN 1 H MAN 1 B MAN 115 n H 2 MAN 2 H MAN 2 B MAN 116 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-3DManpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(3+1)][a-D-Manp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 MAN 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHATE ION' PO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NPL _pdbx_initial_refinement_model.details 'PDB ENTRY 1NPL' #