HEADER SUGAR BINDING PROTEIN 30-JUL-08 3DZW TITLE STRUCTURE OF NARCISSUS PSEUDONARCISSUS LECTIN COMPLEX WITH MANNOBIOSE TITLE 2 AT 1.7 A RESOLUTION, FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NARCISSUS PSEUDONARCISSUS; SOURCE 3 ORGANISM_TAXID: 39639; SOURCE 4 STRAIN: DUTCH MASTER CULTIVAR; SOURCE 5 OTHER_DETAILS: BULB KEYWDS LECTIN, AGGLUTININ, MANNOBIOSE, MANNOSE-ALPHA1, 3-MANNOSE, DAFFODIL, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,S.OZBEY,M.K.SAUERBORN REVDAT 4 30-AUG-23 3DZW 1 HETSYN REVDAT 3 29-JUL-20 3DZW 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 13-JUL-11 3DZW 1 VERSN REVDAT 1 11-AUG-09 3DZW 0 JRNL AUTH P.J.RIZKALLAH,S.OZBEY,M.K.SAUERBORN JRNL TITL STRUCTURE OF NARCISSUS PSEUDONARCISSUS LECTIN COMPLEX WITH JRNL TITL 2 MANNOBIOSE AT 1.7 A RESOLUTION, FORM II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2080 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 163 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2019 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1291 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2787 ; 1.544 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3109 ; 2.461 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 2.606 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;23.490 ;24.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 287 ; 7.953 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ; 5.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2181 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 396 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 305 ; 0.157 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1334 ; 0.175 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 988 ; 0.158 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 885 ; 0.096 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 266 ; 0.145 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.013 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.067 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.172 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 58 ; 0.289 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1488 ; 1.910 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 470 ; 0.540 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1859 ; 2.199 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1017 ; 3.238 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 928 ; 4.649 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 109 4 REMARK 3 1 A 1 A 109 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 B (A): 1399 ; 0.38 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1399 ; 0.49 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5953 38.4255 25.2583 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: -0.0122 REMARK 3 T33: -0.0154 T12: -0.0176 REMARK 3 T13: -0.0070 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.8710 L22: 0.3372 REMARK 3 L33: 0.2395 L12: 0.2635 REMARK 3 L13: -0.2571 L23: -0.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.0415 S13: 0.0253 REMARK 3 S21: 0.0472 S22: -0.0679 S23: 0.0621 REMARK 3 S31: 0.0107 S32: 0.0142 S33: 0.0103 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7332 35.6822 62.6282 REMARK 3 T TENSOR REMARK 3 T11: 0.0062 T22: -0.0024 REMARK 3 T33: -0.0215 T12: -0.0268 REMARK 3 T13: -0.0114 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.0755 L22: 0.6524 REMARK 3 L33: 0.1410 L12: 0.0904 REMARK 3 L13: -0.1907 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: -0.0878 S13: -0.1094 REMARK 3 S21: 0.0495 S22: -0.0867 S23: 0.0847 REMARK 3 S31: 0.0138 S32: 0.0078 S33: 0.0050 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. THE RAMACHANDRAN PLOT OUTLIERS ARE A REMARK 3 FEATURE OF THIS STRUCTURE, DICTATED BY THE TETRAMERIC REMARK 3 OLIGOMERISATION, DRIVEN BY STRONG HYDROPHOBICITY WHICH CAUSES REMARK 3 THE DEVIATION. REMARK 4 REMARK 4 3DZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88 REMARK 200 MONOCHROMATOR : SI III SAGITALLY FOCUSED REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 21.031 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NPL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML IN PHOSPHATE BUFFERED SALINE, REMARK 280 CONTAINING UP TO 20MM BETA-1,3 MANNOBIOSE, PH 8.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.18300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.18300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.00150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.00550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.00150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.00550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.18300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.00150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.00550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.18300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.00150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.00550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.00300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.18300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 72.00300 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 102.01100 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -37.18300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 102.01100 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 74.36600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.00300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.18300 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.00300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 111.54900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 244 O HOH B 364 3656 0.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 98.75 -162.32 REMARK 500 VAL A 36 -111.77 63.57 REMARK 500 ARG A 92 1.69 83.17 REMARK 500 VAL B 36 -111.78 62.69 REMARK 500 ARG B 92 1.44 81.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NPL RELATED DB: PDB REMARK 900 SAME PROTEIN, CRYSTAL FORM I DBREF 3DZW A 1 109 PDB 3DZW 3DZW 1 109 DBREF 3DZW B 1 109 PDB 3DZW 3DZW 1 109 SEQRES 1 A 109 ASP ASN ILE LEU TYR SER GLY GLU THR LEU SER PRO GLY SEQRES 2 A 109 GLU PHE LEU ASN ASN GLY ARG TYR VAL PHE ILE MET GLN SEQRES 3 A 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP VAL ASP LYS PRO SEQRES 4 A 109 ILE TRP ALA THR ASN THR GLY GLY LEU ASP ARG ARG CYS SEQRES 5 A 109 HIS LEU SER MET GLN SER ASP GLY ASN LEU VAL VAL TYR SEQRES 6 A 109 SER PRO ARG ASN ASN PRO ILE TRP ALA SER ASN THR GLY SEQRES 7 A 109 GLY GLU ASN GLY ASN TYR VAL CYS VAL LEU GLN LYS ASP SEQRES 8 A 109 ARG ASN VAL VAL ILE TYR GLY THR ALA ARG TRP ALA THR SEQRES 9 A 109 GLY THR ASN ILE HIS SEQRES 1 B 109 ASP ASN ILE LEU TYR SER GLY GLU THR LEU SER PRO GLY SEQRES 2 B 109 GLU PHE LEU ASN ASN GLY ARG TYR VAL PHE ILE MET GLN SEQRES 3 B 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP VAL ASP LYS PRO SEQRES 4 B 109 ILE TRP ALA THR ASN THR GLY GLY LEU ASP ARG ARG CYS SEQRES 5 B 109 HIS LEU SER MET GLN SER ASP GLY ASN LEU VAL VAL TYR SEQRES 6 B 109 SER PRO ARG ASN ASN PRO ILE TRP ALA SER ASN THR GLY SEQRES 7 B 109 GLY GLU ASN GLY ASN TYR VAL CYS VAL LEU GLN LYS ASP SEQRES 8 B 109 ARG ASN VAL VAL ILE TYR GLY THR ALA ARG TRP ALA THR SEQRES 9 B 109 GLY THR ASN ILE HIS HET MAN C 1 12 HET MAN C 2 11 HET MAN D 1 12 HET MAN D 2 11 HET MAN E 1 12 HET MAN E 2 11 HET MAN F 1 12 HET MAN F 2 11 HET MAN G 1 12 HET MAN G 2 11 HET MAN H 1 12 HET MAN H 2 11 HET PO4 A 119 5 HET PO4 A 117 5 HET PO4 A 118 5 HET PO4 B 117 5 HET PO4 B 118 5 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 MAN 12(C6 H12 O6) FORMUL 9 PO4 5(O4 P 3-) FORMUL 14 HOH *295(H2 O) SHEET 1 A 3 ILE A 3 TYR A 5 0 SHEET 2 A 3 TYR A 84 LEU A 88 -1 O CYS A 86 N LEU A 4 SHEET 3 A 3 VAL A 94 GLY A 98 -1 O VAL A 95 N VAL A 87 SHEET 1 B 4 GLU A 8 LEU A 10 0 SHEET 2 B 4 HIS A 53 MET A 56 -1 O LEU A 54 N LEU A 10 SHEET 3 B 4 LEU A 62 TYR A 65 -1 O VAL A 63 N SER A 55 SHEET 4 B 4 PRO A 71 ALA A 74 -1 O ILE A 72 N VAL A 64 SHEET 1 C 4 PHE A 15 ASN A 18 0 SHEET 2 C 4 TYR A 21 MET A 25 -1 O PHE A 23 N LEU A 16 SHEET 3 C 4 LEU A 31 ASP A 35 -1 O TYR A 34 N VAL A 22 SHEET 4 C 4 LYS A 38 ALA A 42 -1 O ILE A 40 N LEU A 33 SHEET 1 D 3 ILE B 3 TYR B 5 0 SHEET 2 D 3 TYR B 84 LEU B 88 -1 O CYS B 86 N LEU B 4 SHEET 3 D 3 VAL B 94 GLY B 98 -1 O VAL B 95 N VAL B 87 SHEET 1 E 4 GLU B 8 LEU B 10 0 SHEET 2 E 4 HIS B 53 MET B 56 -1 O LEU B 54 N LEU B 10 SHEET 3 E 4 LEU B 62 TYR B 65 -1 O VAL B 63 N SER B 55 SHEET 4 E 4 PRO B 71 ALA B 74 -1 O ILE B 72 N VAL B 64 SHEET 1 F 4 PHE B 15 ASN B 18 0 SHEET 2 F 4 TYR B 21 MET B 25 -1 O PHE B 23 N LEU B 16 SHEET 3 F 4 LEU B 31 ASP B 35 -1 O TYR B 34 N VAL B 22 SHEET 4 F 4 LYS B 38 ALA B 42 -1 O ILE B 40 N LEU B 33 SSBOND 1 CYS A 29 CYS A 52 1555 1555 2.02 SSBOND 2 CYS B 29 CYS B 52 1555 1555 2.03 LINK O3 MAN C 1 C1 MAN C 2 1555 1555 1.44 LINK O3 MAN D 1 C1 MAN D 2 1555 1555 1.45 LINK O3 MAN E 1 C1 MAN E 2 1555 1555 1.44 LINK O3 MAN F 1 C1 MAN F 2 1555 1555 1.44 LINK O3 MAN G 1 C1 MAN G 2 1555 1555 1.45 LINK O3 MAN H 1 C1 MAN H 2 1555 1555 1.44 CISPEP 1 GLY A 98 THR A 99 0 0.26 CISPEP 2 GLY A 98 THR A 99 0 0.10 CISPEP 3 GLY B 98 THR B 99 0 0.23 CISPEP 4 GLY B 98 THR B 99 0 0.02 CRYST1 72.003 102.011 74.366 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013888 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013447 0.00000