HEADER HYDROLASE ACTIVATOR 30-JUL-08 3DZX OBSLTE 06-JUN-18 3DZX 6D0S TITLE CRYSTAL STRUCTURE OF THE RABGAP DOMAIN OF HUMAN TBC1D22B COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBC1 DOMAIN FAMILY MEMBER 22B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RAB-GAP TBC DOMAIN, UNP RESIDUES 178-505; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBC1D22B, C6ORF197; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL (GI:134105571) KEYWDS RAB-GAP, GTPASE ACTIVATOR, TBC1, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, GTPASE ACTIVATION, SIGNALING PROTEIN, KEYWDS 3 HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,Y.TONG,W.TEMPEL,Y.SHEN,F.MACKENZIE,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,M.WILKSTROM,A.BOCHKAREV,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 5 06-JUN-18 3DZX 1 OBSLTE REVDAT 4 25-OCT-17 3DZX 1 REMARK REVDAT 3 13-JUL-11 3DZX 1 VERSN REVDAT 2 24-FEB-09 3DZX 1 VERSN REVDAT 1 19-AUG-08 3DZX 0 JRNL AUTH L.NEDYALKOVA,Y.TONG,W.TEMPEL,Y.SHEN,F.MACKENZIE, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,M.WILKSTROM, JRNL AUTH 3 A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE RABGAP DOMAIN OF HUMAN TBC1D22B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 18041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.127 REMARK 3 FREE R VALUE TEST SET COUNT : 925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1088 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07300 REMARK 3 B22 (A**2) : 0.07300 REMARK 3 B33 (A**2) : -0.10900 REMARK 3 B12 (A**2) : 0.03600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.248 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2296 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1539 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3120 ; 1.300 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3715 ; 0.897 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 4.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;37.161 ;23.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;14.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.696 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2541 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 514 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 1.422 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 551 ; 0.335 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2215 ; 2.323 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 907 ; 1.480 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 905 ; 2.105 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 61.8090 24.8700 -5.5660 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.0913 REMARK 3 T33: 0.0327 T12: 0.0179 REMARK 3 T13: -0.0353 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.2131 L22: 3.9951 REMARK 3 L33: 1.4254 L12: 2.0367 REMARK 3 L13: 1.0094 L23: 0.6532 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: 0.0523 S13: 0.0616 REMARK 3 S21: -0.0845 S22: -0.0827 S23: 0.1327 REMARK 3 S31: -0.0704 S32: -0.0574 S33: 0.1625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ATOM RECORD REMARK 3 CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3DZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 15.80 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QFZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 0.001M DTT, 1:100 CHYMOTRYPSIN, PH 6.3, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.09200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.54600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.81900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.27300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 181.36500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 145.09200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.54600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.27300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.81900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 181.36500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 SER A 167 REMARK 465 SER A 168 REMARK 465 GLY A 169 REMARK 465 ARG A 170 REMARK 465 GLU A 171 REMARK 465 ASN A 172 REMARK 465 LEU A 173 REMARK 465 TYR A 174 REMARK 465 PHE A 175 REMARK 465 GLN A 176 REMARK 465 GLY A 177 REMARK 465 MET A 178 REMARK 465 THR A 179 REMARK 465 VAL A 180 REMARK 465 ARG A 181 REMARK 465 GLU A 182 REMARK 465 LYS A 183 REMARK 465 THR A 231 REMARK 465 GLU A 232 REMARK 465 ARG A 233 REMARK 465 ARG A 234 REMARK 465 LYS A 235 REMARK 465 LEU A 236 REMARK 465 ASP A 254 REMARK 465 SER A 255 REMARK 465 ARG A 256 REMARK 465 ASN A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 GLN A 262 REMARK 465 ASP A 263 REMARK 465 THR A 264 REMARK 465 TYR A 265 REMARK 465 ARG A 266 REMARK 465 GLN A 267 REMARK 465 ILE A 268 REMARK 465 HIS A 269 REMARK 465 ILE A 270 REMARK 465 ASP A 271 REMARK 465 ILE A 272 REMARK 465 PRO A 273 REMARK 465 ARG A 274 REMARK 465 THR A 275 REMARK 465 ASN A 276 REMARK 465 PRO A 277 REMARK 465 LEU A 278 REMARK 465 ILE A 279 REMARK 465 GLY A 306 REMARK 465 TYR A 307 REMARK 465 VAL A 308 REMARK 465 GLN A 309 REMARK 465 GLU A 435 REMARK 465 GLY A 436 REMARK 465 PHE A 437 REMARK 465 ASN A 501 REMARK 465 HIS A 502 REMARK 465 TYR A 503 REMARK 465 ARG A 504 REMARK 465 ARG A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 184 OG1 CG2 REMARK 470 ARG A 185 CD NE CZ NH1 NH2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ASP A 201 CG OD1 OD2 REMARK 470 LYS A 205 CD CE NZ REMARK 470 ARG A 213 CD NE CZ NH1 NH2 REMARK 470 THR A 237 OG1 CG2 REMARK 470 GLN A 239 CD OE1 NE2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 GLN A 283 CG CD OE1 NE2 REMARK 470 GLN A 288 CD OE1 NE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 ILE A 311 CG1 CG2 CD1 REMARK 470 ASN A 312 CG OD1 ND2 REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 VAL A 331 CG1 CG2 REMARK 470 ASN A 333 CG OD1 ND2 REMARK 470 ASP A 335 CG OD1 OD2 REMARK 470 THR A 337 OG1 CG2 REMARK 470 ASN A 338 CG OD1 ND2 REMARK 470 GLN A 363 CD OE1 NE2 REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 ARG A 397 NE CZ NH1 NH2 REMARK 470 ARG A 421 NE CZ NH1 NH2 REMARK 470 SER A 438 OG REMARK 470 HIS A 439 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 454 CG CD CE NZ REMARK 470 ILE A 475 CG1 CG2 CD1 REMARK 470 GLU A 480 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 283 44.22 -97.87 REMARK 500 GLU A 328 -75.46 -71.49 REMARK 500 ASP A 330 104.28 -38.49 REMARK 500 ASN A 338 48.02 -94.64 REMARK 500 GLN A 370 60.94 36.94 REMARK 500 ASN A 471 50.66 -148.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 4 DBREF 3DZX A 178 505 UNP Q9NU19 TB22B_HUMAN 178 505 SEQADV 3DZX MET A 160 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX HIS A 161 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX HIS A 162 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX HIS A 163 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX HIS A 164 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX HIS A 165 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX HIS A 166 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX SER A 167 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX SER A 168 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX GLY A 169 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX ARG A 170 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX GLU A 171 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX ASN A 172 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX LEU A 173 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX TYR A 174 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX PHE A 175 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX GLN A 176 UNP Q9NU19 EXPRESSION TAG SEQADV 3DZX GLY A 177 UNP Q9NU19 EXPRESSION TAG SEQRES 1 A 346 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 346 LEU TYR PHE GLN GLY MET THR VAL ARG GLU LYS THR ARG SEQRES 3 A 346 LEU GLU LYS PHE ARG GLN LEU LEU SER SER GLN ASN THR SEQRES 4 A 346 ASP LEU ASP GLU LEU ARG LYS CYS SER TRP PRO GLY VAL SEQRES 5 A 346 PRO ARG GLU VAL ARG PRO ILE THR TRP ARG LEU LEU SER SEQRES 6 A 346 GLY TYR LEU PRO ALA ASN THR GLU ARG ARG LYS LEU THR SEQRES 7 A 346 LEU GLN ARG LYS ARG GLU GLU TYR PHE GLY PHE ILE GLU SEQRES 8 A 346 GLN TYR TYR ASP SER ARG ASN GLU GLU HIS HIS GLN ASP SEQRES 9 A 346 THR TYR ARG GLN ILE HIS ILE ASP ILE PRO ARG THR ASN SEQRES 10 A 346 PRO LEU ILE PRO LEU PHE GLN GLN PRO LEU VAL GLN GLU SEQRES 11 A 346 ILE PHE GLU ARG ILE LEU PHE ILE TRP ALA ILE ARG HIS SEQRES 12 A 346 PRO ALA SER GLY TYR VAL GLN GLY ILE ASN ASP LEU VAL SEQRES 13 A 346 THR PRO PHE PHE VAL VAL PHE LEU SER GLU TYR VAL GLU SEQRES 14 A 346 GLU ASP VAL GLU ASN PHE ASP VAL THR ASN LEU SER GLN SEQRES 15 A 346 ASP MET LEU ARG SER ILE GLU ALA ASP SER PHE TRP CYS SEQRES 16 A 346 MET SER LYS LEU LEU ASP GLY ILE GLN ASP ASN TYR THR SEQRES 17 A 346 PHE ALA GLN PRO GLY ILE GLN LYS LYS VAL LYS ALA LEU SEQRES 18 A 346 GLU GLU LEU VAL SER ARG ILE ASP GLU GLN VAL HIS ASN SEQRES 19 A 346 HIS PHE ARG ARG TYR GLU VAL GLU TYR LEU GLN PHE ALA SEQRES 20 A 346 PHE ARG TRP MET ASN ASN LEU LEU MET ARG GLU LEU PRO SEQRES 21 A 346 LEU ARG CYS THR ILE ARG LEU TRP ASP THR TYR GLN SER SEQRES 22 A 346 GLU PRO GLU GLY PHE SER HIS PHE HIS LEU TYR VAL CYS SEQRES 23 A 346 ALA ALA PHE LEU ILE LYS TRP ARG LYS GLU ILE LEU ASP SEQRES 24 A 346 GLU GLU ASP PHE GLN GLY LEU LEU MET LEU LEU GLN ASN SEQRES 25 A 346 LEU PRO THR ILE HIS TRP GLY ASN GLU GLU ILE GLY LEU SEQRES 26 A 346 LEU LEU ALA GLU ALA TYR ARG LEU LYS TYR MET PHE ALA SEQRES 27 A 346 ASP ALA PRO ASN HIS TYR ARG ARG HET UNX A 1 1 HET UNX A 2 1 HET UNX A 3 1 HET UNX A 4 1 HET UNX A 5 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 UNX 5(X) FORMUL 7 HOH *8(H2 O) HELIX 1 1 THR A 184 SER A 194 1 11 HELIX 2 2 ASP A 199 TRP A 208 1 10 HELIX 3 3 PRO A 212 GLU A 214 5 3 HELIX 4 4 VAL A 215 SER A 224 1 10 HELIX 5 5 THR A 237 TYR A 253 1 17 HELIX 6 6 GLN A 284 ARG A 301 1 18 HELIX 7 7 ASN A 312 LEU A 314 5 3 HELIX 8 8 VAL A 315 VAL A 327 1 13 HELIX 9 9 ASP A 330 PHE A 334 5 5 HELIX 10 10 ASP A 335 LEU A 339 5 5 HELIX 11 11 SER A 340 GLY A 361 1 22 HELIX 12 12 ILE A 362 TYR A 366 5 5 HELIX 13 13 GLN A 370 ASP A 388 1 19 HELIX 14 14 ASP A 388 TYR A 398 1 11 HELIX 15 15 TYR A 402 ASN A 412 1 11 HELIX 16 16 LEU A 414 LEU A 418 5 5 HELIX 17 17 PRO A 419 GLU A 433 1 15 HELIX 18 18 SER A 438 TRP A 452 1 15 HELIX 19 19 TRP A 452 ASP A 458 1 7 HELIX 20 20 ASP A 461 ASN A 471 1 11 HELIX 21 21 GLY A 478 ALA A 497 1 20 SITE 1 AC1 2 GLN A 463 HIS A 476 SITE 1 AC2 5 GLN A 463 PRO A 473 THR A 474 ILE A 475 SITE 2 AC2 5 HIS A 476 SITE 1 AC3 4 HIS A 302 PRO A 303 ALA A 304 ARG A 453 CRYST1 78.032 78.032 217.638 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012815 0.007399 0.000000 0.00000 SCALE2 0.000000 0.014798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004595 0.00000