HEADER OXIDOREDUCTASE 30-JUL-08 3E03 TITLE CRYSTAL STRUCTURE OF A PUTATIVE DEHYDROGENASE FROM XANTHOMONAS TITLE 2 CAMPESTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN DEHYDROGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 GENE: XCC3285; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-CODON+RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC), MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, PSI-2, DEHYDROGENASE, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM, KEYWDS 3 NYSGXRC, OXIDOREDUCTASE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,S.WASSERMAN,M.RUTTER,S.HU,K.BAIN,L.RODGERS,S.ATWELL, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 4 10-FEB-21 3E03 1 AUTHOR JRNL REMARK LINK REVDAT 3 14-NOV-18 3E03 1 AUTHOR REVDAT 2 24-FEB-09 3E03 1 VERSN REVDAT 1 16-SEP-08 3E03 0 JRNL AUTH P.SAMPATHKUMAR,S.WASSERMAN,M.RUTTER,S.HU,K.BAIN,L.RODGERS, JRNL AUTH 2 S.ATWELL,J.M.SAUDER,S.K.BURLEY JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE DEHYDROGENASE FROM JRNL TITL 2 XANTHOMONAS CAMPESTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 82377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 806 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.932 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6070 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3928 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8316 ; 1.306 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9618 ; 0.937 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 834 ; 5.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;32.620 ;23.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 891 ;11.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;14.524 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 987 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6968 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1193 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1250 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4244 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3020 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3064 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 546 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.088 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 91 ; 0.260 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 55 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4147 ; 1.152 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1657 ; 0.290 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6450 ; 1.691 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2139 ; 2.119 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1852 ; 3.186 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 44.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 10.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48700 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5, 0.2M REMARK 280 CALCIUMCHLORIDE,10% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 125.64300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.67550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 125.64300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.67550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 8.45296 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -72.83413 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 242.83304 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.83413 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -8.45296 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 72.83413 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 202 REMARK 465 ALA A 203 REMARK 465 ILE A 204 REMARK 465 ASN A 205 REMARK 465 MSE A 206 REMARK 465 LEU A 207 REMARK 465 PRO A 208 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 275 REMARK 465 SER C 2 REMARK 465 GLY C 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 GLN A 263 CG CD OE1 NE2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 3 CG CD1 CD2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 SER C 100 OG REMARK 470 LYS C 113 CG CD CE NZ REMARK 470 ASP C 202 CG OD1 OD2 REMARK 470 ASN C 205 CG OD1 ND2 REMARK 470 ASP C 211 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 16 O HOH C 533 2.05 REMARK 500 OD2 ASP A 109 O HOH A 523 2.12 REMARK 500 OE2 GLU B 232 O HOH B 414 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 74 CD GLU B 74 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 103 114.90 -165.02 REMARK 500 ASN A 122 -90.89 -87.05 REMARK 500 ASN A 155 108.74 -58.31 REMARK 500 HIS A 162 78.04 -170.30 REMARK 500 LEU B 47 85.07 -158.96 REMARK 500 TRP B 103 107.78 -161.06 REMARK 500 ASN B 122 -95.34 -89.15 REMARK 500 HIS B 162 78.84 -172.36 REMARK 500 LEU B 207 72.22 -114.49 REMARK 500 ASN C 122 -93.57 -86.93 REMARK 500 ASN C 122 -93.80 -86.40 REMARK 500 HIS C 162 76.66 -169.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 104 O REMARK 620 2 ALA A 161 O 101.6 REMARK 620 3 HIS A 162 ND1 84.9 74.2 REMARK 620 4 HOH A 527 O 84.1 81.6 150.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11152B RELATED DB: TARGETDB DBREF 3E03 A 4 273 UNP Q8P5Q1 Q8P5Q1_XANCP 2 271 DBREF 3E03 B 4 273 UNP Q8P5Q1 Q8P5Q1_XANCP 2 271 DBREF 3E03 C 4 273 UNP Q8P5Q1 Q8P5Q1_XANCP 2 271 SEQADV 3E03 SER A 2 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 LEU A 3 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 GLU A 274 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 GLY A 275 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 SER B 2 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 LEU B 3 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 GLU B 274 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 GLY B 275 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 SER C 2 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 LEU C 3 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 GLU C 274 UNP Q8P5Q1 EXPRESSION TAG SEQADV 3E03 GLY C 275 UNP Q8P5Q1 EXPRESSION TAG SEQRES 1 A 274 SER LEU THR LEU SER GLY LYS THR LEU PHE ILE THR GLY SEQRES 2 A 274 ALA SER ARG GLY ILE GLY LEU ALA ILE ALA LEU ARG ALA SEQRES 3 A 274 ALA ARG ASP GLY ALA ASN VAL ALA ILE ALA ALA LYS SER SEQRES 4 A 274 ALA VAL ALA ASN PRO LYS LEU PRO GLY THR ILE HIS SER SEQRES 5 A 274 ALA ALA ALA ALA VAL ASN ALA ALA GLY GLY GLN GLY LEU SEQRES 6 A 274 ALA LEU LYS CYS ASP ILE ARG GLU GLU ASP GLN VAL ARG SEQRES 7 A 274 ALA ALA VAL ALA ALA THR VAL ASP THR PHE GLY GLY ILE SEQRES 8 A 274 ASP ILE LEU VAL ASN ASN ALA SER ALA ILE TRP LEU ARG SEQRES 9 A 274 GLY THR LEU ASP THR PRO MSE LYS ARG PHE ASP LEU MSE SEQRES 10 A 274 GLN GLN VAL ASN ALA ARG GLY SER PHE VAL CYS ALA GLN SEQRES 11 A 274 ALA CYS LEU PRO HIS LEU LEU GLN ALA PRO ASN PRO HIS SEQRES 12 A 274 ILE LEU THR LEU ALA PRO PRO PRO SER LEU ASN PRO ALA SEQRES 13 A 274 TRP TRP GLY ALA HIS THR GLY TYR THR LEU ALA LYS MSE SEQRES 14 A 274 GLY MSE SER LEU VAL THR LEU GLY LEU ALA ALA GLU PHE SEQRES 15 A 274 GLY PRO GLN GLY VAL ALA ILE ASN ALA LEU TRP PRO ARG SEQRES 16 A 274 THR VAL ILE ALA THR ASP ALA ILE ASN MSE LEU PRO GLY SEQRES 17 A 274 VAL ASP ALA ALA ALA CYS ARG ARG PRO GLU ILE MSE ALA SEQRES 18 A 274 ASP ALA ALA HIS ALA VAL LEU THR ARG GLU ALA ALA GLY SEQRES 19 A 274 PHE HIS GLY GLN PHE LEU ILE ASP ASP GLU VAL LEU ALA SEQRES 20 A 274 GLN ALA GLY ILE THR ASP LEU SER GLY TYR ALA VAL ASP SEQRES 21 A 274 PRO GLN ARG ALA LEU LEU PRO ASP LEU PHE LEU GLU GLU SEQRES 22 A 274 GLY SEQRES 1 B 274 SER LEU THR LEU SER GLY LYS THR LEU PHE ILE THR GLY SEQRES 2 B 274 ALA SER ARG GLY ILE GLY LEU ALA ILE ALA LEU ARG ALA SEQRES 3 B 274 ALA ARG ASP GLY ALA ASN VAL ALA ILE ALA ALA LYS SER SEQRES 4 B 274 ALA VAL ALA ASN PRO LYS LEU PRO GLY THR ILE HIS SER SEQRES 5 B 274 ALA ALA ALA ALA VAL ASN ALA ALA GLY GLY GLN GLY LEU SEQRES 6 B 274 ALA LEU LYS CYS ASP ILE ARG GLU GLU ASP GLN VAL ARG SEQRES 7 B 274 ALA ALA VAL ALA ALA THR VAL ASP THR PHE GLY GLY ILE SEQRES 8 B 274 ASP ILE LEU VAL ASN ASN ALA SER ALA ILE TRP LEU ARG SEQRES 9 B 274 GLY THR LEU ASP THR PRO MSE LYS ARG PHE ASP LEU MSE SEQRES 10 B 274 GLN GLN VAL ASN ALA ARG GLY SER PHE VAL CYS ALA GLN SEQRES 11 B 274 ALA CYS LEU PRO HIS LEU LEU GLN ALA PRO ASN PRO HIS SEQRES 12 B 274 ILE LEU THR LEU ALA PRO PRO PRO SER LEU ASN PRO ALA SEQRES 13 B 274 TRP TRP GLY ALA HIS THR GLY TYR THR LEU ALA LYS MSE SEQRES 14 B 274 GLY MSE SER LEU VAL THR LEU GLY LEU ALA ALA GLU PHE SEQRES 15 B 274 GLY PRO GLN GLY VAL ALA ILE ASN ALA LEU TRP PRO ARG SEQRES 16 B 274 THR VAL ILE ALA THR ASP ALA ILE ASN MSE LEU PRO GLY SEQRES 17 B 274 VAL ASP ALA ALA ALA CYS ARG ARG PRO GLU ILE MSE ALA SEQRES 18 B 274 ASP ALA ALA HIS ALA VAL LEU THR ARG GLU ALA ALA GLY SEQRES 19 B 274 PHE HIS GLY GLN PHE LEU ILE ASP ASP GLU VAL LEU ALA SEQRES 20 B 274 GLN ALA GLY ILE THR ASP LEU SER GLY TYR ALA VAL ASP SEQRES 21 B 274 PRO GLN ARG ALA LEU LEU PRO ASP LEU PHE LEU GLU GLU SEQRES 22 B 274 GLY SEQRES 1 C 274 SER LEU THR LEU SER GLY LYS THR LEU PHE ILE THR GLY SEQRES 2 C 274 ALA SER ARG GLY ILE GLY LEU ALA ILE ALA LEU ARG ALA SEQRES 3 C 274 ALA ARG ASP GLY ALA ASN VAL ALA ILE ALA ALA LYS SER SEQRES 4 C 274 ALA VAL ALA ASN PRO LYS LEU PRO GLY THR ILE HIS SER SEQRES 5 C 274 ALA ALA ALA ALA VAL ASN ALA ALA GLY GLY GLN GLY LEU SEQRES 6 C 274 ALA LEU LYS CYS ASP ILE ARG GLU GLU ASP GLN VAL ARG SEQRES 7 C 274 ALA ALA VAL ALA ALA THR VAL ASP THR PHE GLY GLY ILE SEQRES 8 C 274 ASP ILE LEU VAL ASN ASN ALA SER ALA ILE TRP LEU ARG SEQRES 9 C 274 GLY THR LEU ASP THR PRO MSE LYS ARG PHE ASP LEU MSE SEQRES 10 C 274 GLN GLN VAL ASN ALA ARG GLY SER PHE VAL CYS ALA GLN SEQRES 11 C 274 ALA CYS LEU PRO HIS LEU LEU GLN ALA PRO ASN PRO HIS SEQRES 12 C 274 ILE LEU THR LEU ALA PRO PRO PRO SER LEU ASN PRO ALA SEQRES 13 C 274 TRP TRP GLY ALA HIS THR GLY TYR THR LEU ALA LYS MSE SEQRES 14 C 274 GLY MSE SER LEU VAL THR LEU GLY LEU ALA ALA GLU PHE SEQRES 15 C 274 GLY PRO GLN GLY VAL ALA ILE ASN ALA LEU TRP PRO ARG SEQRES 16 C 274 THR VAL ILE ALA THR ASP ALA ILE ASN MSE LEU PRO GLY SEQRES 17 C 274 VAL ASP ALA ALA ALA CYS ARG ARG PRO GLU ILE MSE ALA SEQRES 18 C 274 ASP ALA ALA HIS ALA VAL LEU THR ARG GLU ALA ALA GLY SEQRES 19 C 274 PHE HIS GLY GLN PHE LEU ILE ASP ASP GLU VAL LEU ALA SEQRES 20 C 274 GLN ALA GLY ILE THR ASP LEU SER GLY TYR ALA VAL ASP SEQRES 21 C 274 PRO GLN ARG ALA LEU LEU PRO ASP LEU PHE LEU GLU GLU SEQRES 22 C 274 GLY MODRES 3E03 MSE A 112 MET SELENOMETHIONINE MODRES 3E03 MSE A 118 MET SELENOMETHIONINE MODRES 3E03 MSE A 170 MET SELENOMETHIONINE MODRES 3E03 MSE A 172 MET SELENOMETHIONINE MODRES 3E03 MSE A 221 MET SELENOMETHIONINE MODRES 3E03 MSE B 112 MET SELENOMETHIONINE MODRES 3E03 MSE B 118 MET SELENOMETHIONINE MODRES 3E03 MSE B 170 MET SELENOMETHIONINE MODRES 3E03 MSE B 172 MET SELENOMETHIONINE MODRES 3E03 MSE B 206 MET SELENOMETHIONINE MODRES 3E03 MSE B 221 MET SELENOMETHIONINE MODRES 3E03 MSE C 112 MET SELENOMETHIONINE MODRES 3E03 MSE C 118 MET SELENOMETHIONINE MODRES 3E03 MSE C 170 MET SELENOMETHIONINE MODRES 3E03 MSE C 172 MET SELENOMETHIONINE MODRES 3E03 MSE C 206 MET SELENOMETHIONINE MODRES 3E03 MSE C 221 MET SELENOMETHIONINE HET MSE A 112 8 HET MSE A 118 8 HET MSE A 170 8 HET MSE A 172 8 HET MSE A 221 8 HET MSE B 112 8 HET MSE B 118 8 HET MSE B 170 8 HET MSE B 172 8 HET MSE B 206 8 HET MSE B 221 8 HET MSE C 112 8 HET MSE C 118 8 HET MSE C 170 8 HET MSE C 172 8 HET MSE C 206 8 HET MSE C 221 8 HET CA A 1 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 4 CA CA 2+ FORMUL 5 HOH *806(H2 O) HELIX 1 1 ARG A 17 ASP A 30 1 14 HELIX 2 2 THR A 50 GLY A 62 1 13 HELIX 3 3 GLU A 74 GLY A 90 1 17 HELIX 4 4 GLY A 106 THR A 110 5 5 HELIX 5 5 PRO A 111 ASN A 122 1 12 HELIX 6 6 ASN A 122 LEU A 138 1 17 HELIX 7 7 ASN A 155 HIS A 162 1 8 HELIX 8 8 HIS A 162 GLY A 184 1 23 HELIX 9 9 PRO A 185 GLY A 187 5 3 HELIX 10 10 ASP A 211 CYS A 215 5 5 HELIX 11 11 PRO A 218 THR A 230 1 13 HELIX 12 12 ASP A 243 ALA A 250 1 8 HELIX 13 13 LEU A 255 ALA A 259 5 5 HELIX 14 14 ARG B 17 ASP B 30 1 14 HELIX 15 15 THR B 50 GLY B 62 1 13 HELIX 16 16 GLU B 74 GLY B 90 1 17 HELIX 17 17 GLY B 106 THR B 110 5 5 HELIX 18 18 PRO B 111 ASN B 122 1 12 HELIX 19 19 ASN B 122 LEU B 138 1 17 HELIX 20 20 ASN B 155 HIS B 162 1 8 HELIX 21 21 HIS B 162 GLY B 184 1 23 HELIX 22 22 PRO B 185 GLY B 187 5 3 HELIX 23 23 THR B 201 LEU B 207 5 7 HELIX 24 24 ASP B 211 CYS B 215 5 5 HELIX 25 25 PRO B 218 THR B 230 1 13 HELIX 26 26 ASP B 243 ALA B 250 1 8 HELIX 27 27 LEU B 255 ALA B 259 5 5 HELIX 28 28 ARG C 17 ASP C 30 1 14 HELIX 29 29 THR C 50 GLY C 62 1 13 HELIX 30 30 GLU C 74 GLY C 90 1 17 HELIX 31 31 GLY C 106 THR C 110 5 5 HELIX 32 32 PRO C 111 ASN C 122 1 12 HELIX 33 33 ASN C 122 LEU C 138 1 17 HELIX 34 34 ASN C 155 HIS C 162 1 8 HELIX 35 35 HIS C 162 GLY C 184 1 23 HELIX 36 36 PRO C 185 GLY C 187 5 3 HELIX 37 37 THR C 201 LEU C 207 5 7 HELIX 38 38 ASP C 211 CYS C 215 5 5 HELIX 39 39 PRO C 218 THR C 230 1 13 HELIX 40 40 ASP C 243 ALA C 250 1 8 HELIX 41 41 LEU C 255 ALA C 259 5 5 SHEET 1 A 7 GLN A 64 LYS A 69 0 SHEET 2 A 7 ASN A 33 ALA A 38 1 N ILE A 36 O LEU A 66 SHEET 3 A 7 THR A 9 THR A 13 1 N LEU A 10 O ALA A 35 SHEET 4 A 7 ILE A 94 ASN A 97 1 O ILE A 94 N PHE A 11 SHEET 5 A 7 HIS A 144 THR A 147 1 O LEU A 146 N LEU A 95 SHEET 6 A 7 ALA A 189 TRP A 194 1 O ALA A 189 N ILE A 145 SHEET 7 A 7 PHE A 240 ILE A 242 1 O LEU A 241 N ALA A 192 SHEET 1 B 7 GLN B 64 LYS B 69 0 SHEET 2 B 7 ASN B 33 ALA B 38 1 N ILE B 36 O LEU B 68 SHEET 3 B 7 THR B 9 THR B 13 1 N LEU B 10 O ALA B 35 SHEET 4 B 7 ILE B 94 ASN B 97 1 O VAL B 96 N PHE B 11 SHEET 5 B 7 HIS B 144 LEU B 148 1 O LEU B 146 N LEU B 95 SHEET 6 B 7 ALA B 189 TRP B 194 1 O ASN B 191 N ILE B 145 SHEET 7 B 7 PHE B 240 ILE B 242 1 O LEU B 241 N ALA B 192 SHEET 1 C 7 GLN C 64 LYS C 69 0 SHEET 2 C 7 ASN C 33 ALA C 38 1 N VAL C 34 O GLN C 64 SHEET 3 C 7 THR C 9 THR C 13 1 N LEU C 10 O ALA C 35 SHEET 4 C 7 ILE C 94 ASN C 97 1 O VAL C 96 N PHE C 11 SHEET 5 C 7 HIS C 144 THR C 147 1 O LEU C 146 N LEU C 95 SHEET 6 C 7 ALA C 189 TRP C 194 1 O ALA C 189 N ILE C 145 SHEET 7 C 7 PHE C 240 ILE C 242 1 O LEU C 241 N ALA C 192 LINK C PRO A 111 N MSE A 112 1555 1555 1.32 LINK C MSE A 112 N LYS A 113 1555 1555 1.34 LINK C LEU A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N GLN A 119 1555 1555 1.34 LINK C LYS A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N GLY A 171 1555 1555 1.33 LINK C GLY A 171 N MSE A 172 1555 1555 1.34 LINK C MSE A 172 N SER A 173 1555 1555 1.33 LINK C ILE A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N ALA A 222 1555 1555 1.33 LINK C PRO B 111 N MSE B 112 1555 1555 1.33 LINK C MSE B 112 N LYS B 113 1555 1555 1.34 LINK C LEU B 117 N MSE B 118 1555 1555 1.34 LINK C MSE B 118 N GLN B 119 1555 1555 1.33 LINK C LYS B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N GLY B 171 1555 1555 1.33 LINK C GLY B 171 N MSE B 172 1555 1555 1.34 LINK C MSE B 172 N SER B 173 1555 1555 1.33 LINK C ASN B 205 N MSE B 206 1555 1555 1.33 LINK C MSE B 206 N LEU B 207 1555 1555 1.34 LINK C ILE B 220 N MSE B 221 1555 1555 1.33 LINK C MSE B 221 N ALA B 222 1555 1555 1.33 LINK C PRO C 111 N MSE C 112 1555 1555 1.33 LINK C MSE C 112 N LYS C 113 1555 1555 1.34 LINK C LEU C 117 N MSE C 118 1555 1555 1.34 LINK C MSE C 118 N GLN C 119 1555 1555 1.33 LINK C LYS C 169 N MSE C 170 1555 1555 1.33 LINK C MSE C 170 N GLY C 171 1555 1555 1.33 LINK C GLY C 171 N MSE C 172 1555 1555 1.34 LINK C MSE C 172 N SER C 173 1555 1555 1.33 LINK C ASN C 205 N MSE C 206 1555 1555 1.34 LINK C MSE C 206 N LEU C 207 1555 1555 1.33 LINK C ILE C 220 N MSE C 221 1555 1555 1.33 LINK C MSE C 221 N ALA C 222 1555 1555 1.32 LINK CA CA A 1 O LEU A 104 1555 1555 2.29 LINK CA CA A 1 O ALA A 161 1555 1555 2.35 LINK CA CA A 1 ND1 HIS A 162 1555 1555 2.63 LINK CA CA A 1 O HOH A 527 1555 1555 2.38 SITE 1 AC1 6 LEU A 104 ALA A 161 HIS A 162 HOH A 527 SITE 2 AC1 6 ASP C 87 HOH C 543 CRYST1 251.286 41.351 73.323 90.00 96.62 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003980 0.000000 0.000462 0.00000 SCALE2 0.000000 0.024183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013730 0.00000