HEADER SIGNALING PROTEIN/CYTOKINE 31-JUL-08 3E0G TITLE STRUCTURE OF THE LEUKEMIA INHIBITORY FACTOR RECEPTOR (LIF-R) DOMAINS TITLE 2 D1-D5 CAVEAT 3E0G NAG B 1 HAS WRONG CHIRALITY AT ATOM C1 MAN B 3 HAS WRONG CAVEAT 2 3E0G CHIRALITY AT ATOM C1 FUC B 4 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKEMIA INHIBITORY FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 52 TO 534; COMPND 5 SYNONYM: LIF RECEPTOR, LIF-R; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIFR; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HIFIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACGP67 KEYWDS IG DOMAIN, CYTOKINE BINDING HOMOLOGY REGION (CHR), CELL MEMBRANE, KEYWDS 2 DISEASE MUTATION, GLYCOPROTEIN, MEMBRANE, RECEPTOR, SECRETED, KEYWDS 3 TRANSMEMBRANE, SIGNALING PROTEIN-CYTOKINE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.LUPARDUS,K.C.GARCIA REVDAT 5 20-OCT-21 3E0G 1 SEQADV HETSYN REVDAT 4 29-JUL-20 3E0G 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 3E0G 1 VERSN REVDAT 2 24-FEB-09 3E0G 1 VERSN REVDAT 1 23-SEP-08 3E0G 0 JRNL AUTH G.SKINIOTIS,P.J.LUPARDUS,M.MARTICK,T.WALZ,K.C.GARCIA JRNL TITL STRUCTURAL ORGANIZATION OF A FULL-LENGTH GP130/LIF-R JRNL TITL 2 CYTOKINE RECEPTOR TRANSMEMBRANE COMPLEX. JRNL REF MOL.CELL V. 31 737 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18775332 JRNL DOI 10.1016/J.MOLCEL.2008.08.011 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 16071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 872 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1173 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 74.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.72000 REMARK 3 B22 (A**2) : -0.88000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.456 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.489 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.476 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 60.725 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.868 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4099 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5599 ; 1.363 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 3.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;43.904 ;24.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 675 ;17.911 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.675 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2987 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1962 ; 0.290 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2839 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 119 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.335 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2440 ; 1.208 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3925 ; 1.899 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1866 ; 1.202 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1674 ; 1.918 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8589 -64.0094 54.1635 REMARK 3 T TENSOR REMARK 3 T11: -0.1079 T22: -0.0133 REMARK 3 T33: -0.0897 T12: -0.0789 REMARK 3 T13: -0.0602 T23: 0.1565 REMARK 3 L TENSOR REMARK 3 L11: 4.7473 L22: 8.9133 REMARK 3 L33: 2.8934 L12: 1.3844 REMARK 3 L13: 0.5254 L23: -0.4331 REMARK 3 S TENSOR REMARK 3 S11: 0.3255 S12: -0.1567 S13: -0.6748 REMARK 3 S21: 0.0688 S22: -0.3003 S23: -0.0142 REMARK 3 S31: 0.3305 S32: 0.2303 S33: -0.0252 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8145 -38.3440 34.0438 REMARK 3 T TENSOR REMARK 3 T11: -0.1023 T22: 0.1053 REMARK 3 T33: -0.0892 T12: -0.0104 REMARK 3 T13: -0.1362 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.5042 L22: 1.9093 REMARK 3 L33: 6.1636 L12: 1.2070 REMARK 3 L13: -2.3624 L23: -2.9158 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: 0.2347 S13: -0.0116 REMARK 3 S21: 0.0153 S22: 0.0398 S23: 0.1204 REMARK 3 S31: -0.1460 S32: -0.4382 S33: -0.0975 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0830 -27.6212 8.9297 REMARK 3 T TENSOR REMARK 3 T11: -0.0700 T22: 0.0413 REMARK 3 T33: -0.1771 T12: 0.0436 REMARK 3 T13: -0.0894 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.0132 L22: 5.1016 REMARK 3 L33: 3.0306 L12: -0.2095 REMARK 3 L13: -1.3718 L23: 1.7116 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.1908 S13: 0.2278 REMARK 3 S21: -0.1170 S22: 0.1041 S23: -0.2944 REMARK 3 S31: 0.1298 S32: -0.2695 S33: -0.1650 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 283 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0407 7.4096 20.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: -0.0241 REMARK 3 T33: 0.0160 T12: 0.1153 REMARK 3 T13: -0.0092 T23: -0.0696 REMARK 3 L TENSOR REMARK 3 L11: 2.0165 L22: 4.9465 REMARK 3 L33: 0.0264 L12: -3.0761 REMARK 3 L13: -0.2161 L23: 0.3010 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.1202 S13: 0.2523 REMARK 3 S21: -0.4982 S22: -0.1235 S23: -0.6191 REMARK 3 S31: -0.0018 S32: -0.0624 S33: 0.0317 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 486 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7492 41.3947 13.9559 REMARK 3 T TENSOR REMARK 3 T11: 0.2535 T22: -0.1902 REMARK 3 T33: 0.3070 T12: 0.0434 REMARK 3 T13: 0.0973 T23: -0.1295 REMARK 3 L TENSOR REMARK 3 L11: 2.6384 L22: 2.2916 REMARK 3 L33: 1.4859 L12: 1.0547 REMARK 3 L13: -1.4687 L23: -1.7051 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: -0.1846 S13: 0.2871 REMARK 3 S21: -0.7281 S22: -0.4168 S23: -0.4000 REMARK 3 S31: -0.0718 S32: 0.3524 S33: 0.3388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16991 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MOUSE LIF-R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.0, 0.1 M REMARK 280 LITHIUM SULFATE, 8% PEG-3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.00400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.58450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.00400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.58450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 THR A 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 127 O ILE A 164 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 114 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 PRO A 114 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 LYS A 128 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 LYS A 128 N - CA - C ANGL. DEV. = -31.4 DEGREES REMARK 500 SER A 130 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 GLY A 232 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 ASP A 242 CB - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 ASP A 242 N - CA - C ANGL. DEV. = 28.4 DEGREES REMARK 500 ALA A 334 CB - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 THR A 338 CB - CA - C ANGL. DEV. = 21.0 DEGREES REMARK 500 THR A 338 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 ILE A 393 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 THR A 480 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 11.54 -64.64 REMARK 500 LYS A 17 -168.01 -71.77 REMARK 500 GLN A 34 -84.98 -129.35 REMARK 500 SER A 36 -168.35 -72.68 REMARK 500 ARG A 37 59.85 -152.51 REMARK 500 LYS A 44 -153.47 -119.18 REMARK 500 ILE A 47 -32.00 -137.97 REMARK 500 LYS A 48 73.94 50.15 REMARK 500 SER A 53 -70.52 -48.37 REMARK 500 HIS A 65 139.16 174.61 REMARK 500 GLN A 79 -77.97 -126.35 REMARK 500 VAL A 81 -156.40 -158.50 REMARK 500 ASP A 86 108.52 -57.95 REMARK 500 THR A 87 121.35 -39.06 REMARK 500 VAL A 112 30.17 -95.68 REMARK 500 LYS A 128 142.69 -177.71 REMARK 500 GLN A 140 -151.59 -155.79 REMARK 500 THR A 142 94.00 -68.22 REMARK 500 LEU A 143 103.80 -53.26 REMARK 500 ASN A 144 45.54 31.33 REMARK 500 PRO A 197 94.37 -47.79 REMARK 500 ASP A 207 42.72 34.39 REMARK 500 LYS A 225 137.70 -34.71 REMARK 500 ILE A 231 -77.72 -87.89 REMARK 500 THR A 234 -32.18 -132.91 REMARK 500 ASN A 235 77.01 53.59 REMARK 500 LEU A 241 -159.37 -99.96 REMARK 500 GLU A 244 25.44 49.49 REMARK 500 PRO A 281 -175.77 -66.95 REMARK 500 GLN A 287 64.16 64.15 REMARK 500 GLU A 291 -168.71 -111.50 REMARK 500 PRO A 313 9.55 -56.91 REMARK 500 ARG A 314 21.33 -145.16 REMARK 500 SER A 323 -72.35 -45.42 REMARK 500 VAL A 329 109.78 -165.45 REMARK 500 ASN A 339 -163.66 -78.70 REMARK 500 ASN A 351 33.22 74.06 REMARK 500 GLN A 352 -72.83 -97.26 REMARK 500 PRO A 364 0.74 -63.18 REMARK 500 SER A 387 73.68 46.38 REMARK 500 THR A 396 -140.42 59.30 REMARK 500 CYS A 415 93.25 -68.90 REMARK 500 LYS A 421 -169.59 -73.36 REMARK 500 SER A 422 84.90 -64.09 REMARK 500 SER A 424 -72.29 -134.77 REMARK 500 GLN A 426 84.50 -154.33 REMARK 500 VAL A 436 -157.36 -106.13 REMARK 500 ASN A 438 77.09 -65.33 REMARK 500 VAL A 443 -157.46 -104.43 REMARK 500 LEU A 445 -156.10 -111.32 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3E0G A 1 483 UNP P42702 LIFR_HUMAN 52 534 SEQADV 3E0G GLN A 13 UNP P42702 ASN 64 ENGINEERED MUTATION SEQADV 3E0G GLN A 34 UNP P42702 ASN 85 ENGINEERED MUTATION SEQADV 3E0G GLN A 92 UNP P42702 ASN 143 ENGINEERED MUTATION SEQADV 3E0G GLN A 140 UNP P42702 ASN 191 ENGINEERED MUTATION SEQADV 3E0G GLN A 192 UNP P42702 ASN 243 ENGINEERED MUTATION SEQADV 3E0G GLN A 434 UNP P42702 LYS 485 ENGINEERED MUTATION SEQRES 1 A 483 ASP LEU LYS CYS VAL THR ASN ASN LEU GLN VAL TRP GLN SEQRES 2 A 483 CYS SER TRP LYS ALA PRO SER GLY THR GLY ARG GLY THR SEQRES 3 A 483 ASP TYR GLU VAL CYS ILE GLU GLN ARG SER ARG SER CYS SEQRES 4 A 483 TYR GLN LEU GLU LYS THR SER ILE LYS ILE PRO ALA LEU SEQRES 5 A 483 SER HIS GLY ASP TYR GLU ILE THR ILE ASN SER LEU HIS SEQRES 6 A 483 ASP PHE GLY SER SER THR SER LYS PHE THR LEU ASN GLU SEQRES 7 A 483 GLN ASN VAL SER LEU ILE PRO ASP THR PRO GLU ILE LEU SEQRES 8 A 483 GLN LEU SER ALA ASP PHE SER THR SER THR LEU TYR LEU SEQRES 9 A 483 LYS TRP ASN ASP ARG GLY SER VAL PHE PRO HIS ARG SER SEQRES 10 A 483 ASN VAL ILE TRP GLU ILE LYS VAL LEU ARG LYS GLU SER SEQRES 11 A 483 MET GLU LEU VAL LYS LEU VAL THR HIS GLN THR THR LEU SEQRES 12 A 483 ASN GLY LYS ASP THR LEU HIS HIS TRP SER TRP ALA SER SEQRES 13 A 483 ASP MET PRO LEU GLU CYS ALA ILE HIS PHE VAL GLU ILE SEQRES 14 A 483 ARG CYS TYR ILE ASP ASN LEU HIS PHE SER GLY LEU GLU SEQRES 15 A 483 GLU TRP SER ASP TRP SER PRO VAL LYS GLN ILE SER TRP SEQRES 16 A 483 ILE PRO ASP SER GLN THR LYS VAL PHE PRO GLN ASP LYS SEQRES 17 A 483 VAL ILE LEU VAL GLY SER ASP ILE THR PHE CYS CYS VAL SEQRES 18 A 483 SER GLN GLU LYS VAL LEU SER ALA LEU ILE GLY HIS THR SEQRES 19 A 483 ASN CYS PRO LEU ILE HIS LEU ASP GLY GLU ASN VAL ALA SEQRES 20 A 483 ILE LYS ILE ARG ASN ILE SER VAL SER ALA SER SER GLY SEQRES 21 A 483 THR ASN VAL VAL PHE THR THR GLU ASP ASN ILE PHE GLY SEQRES 22 A 483 THR VAL ILE PHE ALA GLY TYR PRO PRO ASP THR PRO GLN SEQRES 23 A 483 GLN LEU ASN CYS GLU THR HIS ASP LEU LYS GLU ILE ILE SEQRES 24 A 483 CYS SER TRP ASN PRO GLY ARG VAL THR ALA LEU VAL GLY SEQRES 25 A 483 PRO ARG ALA THR SER TYR THR LEU VAL GLU SER PHE SER SEQRES 26 A 483 GLY LYS TYR VAL ARG LEU LYS ARG ALA GLU ALA PRO THR SEQRES 27 A 483 ASN GLU SER TYR GLN LEU LEU PHE GLN MET LEU PRO ASN SEQRES 28 A 483 GLN GLU ILE TYR ASN PHE THR LEU ASN ALA HIS ASN PRO SEQRES 29 A 483 LEU GLY ARG SER GLN SER THR ILE LEU VAL ASN ILE THR SEQRES 30 A 483 GLU LYS VAL TYR PRO HIS THR PRO THR SER PHE LYS VAL SEQRES 31 A 483 LYS ASP ILE ASN SER THR ALA VAL LYS LEU SER TRP HIS SEQRES 32 A 483 LEU PRO GLY ASN PHE ALA LYS ILE ASN PHE LEU CYS GLU SEQRES 33 A 483 ILE GLU ILE LYS LYS SER ASN SER VAL GLN GLU GLN ARG SEQRES 34 A 483 ASN VAL THR ILE GLN GLY VAL GLU ASN SER SER TYR LEU SEQRES 35 A 483 VAL ALA LEU ASP LYS LEU ASN PRO TYR THR LEU TYR THR SEQRES 36 A 483 PHE ARG ILE ARG CYS SER THR GLU THR PHE TRP LYS TRP SEQRES 37 A 483 SER LYS TRP SER ASN LYS LYS GLN HIS LEU THR THR GLU SEQRES 38 A 483 ALA SER MODRES 3E0G ASN A 80 ASN GLYCOSYLATION SITE MODRES 3E0G ASN A 252 ASN GLYCOSYLATION SITE MODRES 3E0G ASN A 356 ASN GLYCOSYLATION SITE MODRES 3E0G ASN A 375 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET FUC B 4 10 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET FUC D 3 10 HET NAG E 1 14 HET NAG E 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 2 MAN C6 H12 O6 FORMUL 2 FUC 2(C6 H12 O5) HELIX 1 1 ARG A 109 PHE A 113 5 5 HELIX 2 2 LEU A 143 LYS A 146 5 4 HELIX 3 3 VAL A 311 ALA A 315 5 5 HELIX 4 4 ASN A 375 VAL A 380 5 6 SHEET 1 A 3 CYS A 4 VAL A 5 0 SHEET 2 A 3 VAL A 11 CYS A 14 -1 O GLN A 13 N VAL A 5 SHEET 3 A 3 ILE A 49 PRO A 50 -1 O ILE A 49 N TRP A 12 SHEET 1 B 4 SER A 38 LEU A 42 0 SHEET 2 B 4 TYR A 28 ILE A 32 -1 N TYR A 28 O LEU A 42 SHEET 3 B 4 ILE A 59 ASN A 62 -1 O THR A 60 N CYS A 31 SHEET 4 B 4 THR A 75 LEU A 76 -1 O LEU A 76 N ILE A 59 SHEET 1 C 2 SER A 82 LEU A 83 0 SHEET 2 C 2 LEU A 181 GLU A 182 1 O LEU A 181 N LEU A 83 SHEET 1 D 3 SER A 94 ASP A 96 0 SHEET 2 D 3 THR A 101 ASP A 108 -1 O TYR A 103 N SER A 94 SHEET 3 D 3 THR A 148 ALA A 155 -1 O TRP A 154 N LEU A 102 SHEET 1 E 4 GLU A 132 THR A 141 0 SHEET 2 E 4 ASN A 118 LEU A 126 -1 N VAL A 125 O LEU A 133 SHEET 3 E 4 HIS A 165 ASP A 174 -1 O ARG A 170 N GLU A 122 SHEET 4 E 4 LYS A 191 ILE A 193 -1 O ILE A 193 N HIS A 165 SHEET 1 F 4 VAL A 203 PHE A 204 0 SHEET 2 F 4 ILE A 216 CYS A 220 -1 O CYS A 219 N PHE A 204 SHEET 3 F 4 VAL A 246 ILE A 250 -1 O VAL A 246 N CYS A 220 SHEET 4 F 4 ILE A 239 HIS A 240 -1 N ILE A 239 O ALA A 247 SHEET 1 G 4 LYS A 208 LEU A 211 0 SHEET 2 G 4 ILE A 271 GLY A 279 1 O PHE A 277 N ILE A 210 SHEET 3 G 4 THR A 261 THR A 267 -1 N THR A 261 O ILE A 276 SHEET 4 G 4 VAL A 226 LEU A 230 -1 N LEU A 230 O VAL A 264 SHEET 1 H 3 GLN A 286 GLU A 291 0 SHEET 2 H 3 GLU A 297 ASN A 303 -1 O SER A 301 N ASN A 289 SHEET 3 H 3 TYR A 342 GLN A 347 -1 O PHE A 346 N ILE A 298 SHEET 1 I 4 TYR A 328 LEU A 331 0 SHEET 2 I 4 SER A 317 GLU A 322 -1 N LEU A 320 O VAL A 329 SHEET 3 I 4 TYR A 355 HIS A 362 -1 O ASN A 360 N THR A 319 SHEET 4 I 4 ARG A 367 VAL A 374 -1 O SER A 370 N LEU A 359 SHEET 1 J 2 THR A 386 VAL A 390 0 SHEET 2 J 2 LEU A 400 HIS A 403 -1 O HIS A 403 N THR A 386 SHEET 1 K 3 GLN A 428 ASN A 430 0 SHEET 2 K 3 GLU A 416 LYS A 420 -1 N ILE A 417 O ARG A 429 SHEET 3 K 3 THR A 455 ARG A 459 -1 O THR A 455 N LYS A 420 SSBOND 1 CYS A 4 CYS A 14 1555 1555 2.06 SSBOND 2 CYS A 31 CYS A 39 1555 1555 2.06 SSBOND 3 CYS A 162 CYS A 219 1555 1555 2.04 SSBOND 4 CYS A 290 CYS A 300 1555 1555 2.04 SSBOND 5 CYS A 415 CYS A 460 1555 1555 2.04 LINK ND2 ASN A 80 C1 NAG E 1 1555 1555 1.46 LINK ND2 ASN A 252 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 356 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 375 C1 NAG C 1 1555 1555 1.47 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 4 1555 1555 1.44 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 CISPEP 1 PHE A 204 PRO A 205 0 -7.58 CRYST1 90.008 143.169 80.362 90.00 110.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011110 0.000000 0.004126 0.00000 SCALE2 0.000000 0.006985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013274 0.00000