data_3E0K # _entry.id 3E0K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3E0K RCSB RCSB048722 WWPDB D_1000048722 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC61276.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3E0K _pdbx_database_status.recvd_initial_deposition_date 2008-07-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Shackelford, G.' 2 'Joachimiak, A.' 3 'Midwest Center for Structural Genomics (MCSG)' 4 # _citation.id primary _citation.title 'Crystal structure of C-termianl domain of N-acetylglutamate synthase from Vibrio parahaemolyticus' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Shackelford, G.' 2 primary 'Joachimiak, A.' 3 # _cell.entry_id 3E0K _cell.length_a 64.232 _cell.length_b 64.232 _cell.length_c 112.718 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3E0K _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Amino-acid acetyltransferase' 17290.406 1 2.3.1.1 ? 'residues 298-445' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 water nat water 18.015 51 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'N-acetylglutamate synthase, AGS, NAGS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAEQVRQAGIDDIGGILELIHPLEEQGILVRRSREQLEQEIGKFTIIEKDGLIIGCAALYPYSEERKAE(MSE)ACVAI HPDYRDGNRGLLLLNY(MSE)KHRSKSENINQIFVLTTHSLHWFREQGFYEVGVDYLPGAKQGLYNFQRKSKILALDL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAEQVRQAGIDDIGGILELIHPLEEQGILVRRSREQLEQEIGKFTIIEKDGLIIGCAALYPYSEERKAEMACVAIHPDY RDGNRGLLLLNYMKHRSKSENINQIFVLTTHSLHWFREQGFYEVGVDYLPGAKQGLYNFQRKSKILALDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC61276.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLU n 1 5 GLN n 1 6 VAL n 1 7 ARG n 1 8 GLN n 1 9 ALA n 1 10 GLY n 1 11 ILE n 1 12 ASP n 1 13 ASP n 1 14 ILE n 1 15 GLY n 1 16 GLY n 1 17 ILE n 1 18 LEU n 1 19 GLU n 1 20 LEU n 1 21 ILE n 1 22 HIS n 1 23 PRO n 1 24 LEU n 1 25 GLU n 1 26 GLU n 1 27 GLN n 1 28 GLY n 1 29 ILE n 1 30 LEU n 1 31 VAL n 1 32 ARG n 1 33 ARG n 1 34 SER n 1 35 ARG n 1 36 GLU n 1 37 GLN n 1 38 LEU n 1 39 GLU n 1 40 GLN n 1 41 GLU n 1 42 ILE n 1 43 GLY n 1 44 LYS n 1 45 PHE n 1 46 THR n 1 47 ILE n 1 48 ILE n 1 49 GLU n 1 50 LYS n 1 51 ASP n 1 52 GLY n 1 53 LEU n 1 54 ILE n 1 55 ILE n 1 56 GLY n 1 57 CYS n 1 58 ALA n 1 59 ALA n 1 60 LEU n 1 61 TYR n 1 62 PRO n 1 63 TYR n 1 64 SER n 1 65 GLU n 1 66 GLU n 1 67 ARG n 1 68 LYS n 1 69 ALA n 1 70 GLU n 1 71 MSE n 1 72 ALA n 1 73 CYS n 1 74 VAL n 1 75 ALA n 1 76 ILE n 1 77 HIS n 1 78 PRO n 1 79 ASP n 1 80 TYR n 1 81 ARG n 1 82 ASP n 1 83 GLY n 1 84 ASN n 1 85 ARG n 1 86 GLY n 1 87 LEU n 1 88 LEU n 1 89 LEU n 1 90 LEU n 1 91 ASN n 1 92 TYR n 1 93 MSE n 1 94 LYS n 1 95 HIS n 1 96 ARG n 1 97 SER n 1 98 LYS n 1 99 SER n 1 100 GLU n 1 101 ASN n 1 102 ILE n 1 103 ASN n 1 104 GLN n 1 105 ILE n 1 106 PHE n 1 107 VAL n 1 108 LEU n 1 109 THR n 1 110 THR n 1 111 HIS n 1 112 SER n 1 113 LEU n 1 114 HIS n 1 115 TRP n 1 116 PHE n 1 117 ARG n 1 118 GLU n 1 119 GLN n 1 120 GLY n 1 121 PHE n 1 122 TYR n 1 123 GLU n 1 124 VAL n 1 125 GLY n 1 126 VAL n 1 127 ASP n 1 128 TYR n 1 129 LEU n 1 130 PRO n 1 131 GLY n 1 132 ALA n 1 133 LYS n 1 134 GLN n 1 135 GLY n 1 136 LEU n 1 137 TYR n 1 138 ASN n 1 139 PHE n 1 140 GLN n 1 141 ARG n 1 142 LYS n 1 143 SER n 1 144 LYS n 1 145 ILE n 1 146 LEU n 1 147 ALA n 1 148 LEU n 1 149 ASP n 1 150 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'argA, VP2371' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio parahaemolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 670 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) derivative' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ARGA_VIBPA _struct_ref.pdbx_db_accession Q87M87 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AEQVRQAGIDDIGGILELIHPLEEQGILVRRSREQLEQEIGKFTIIEKDGLIIGCAALYPYSEERKAEMACVAIHPDYRD GNRGLLLLNYMKHRSKSENINQIFVLTTHSLHWFREQGFYEVGVDYLPGAKQGLYNFQRKSKILALDL ; _struct_ref.pdbx_align_begin 298 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3E0K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q87M87 _struct_ref_seq.db_align_beg 298 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 445 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 298 _struct_ref_seq.pdbx_auth_seq_align_end 445 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3E0K SER A 1 ? UNP Q87M87 ? ? 'expression tag' 296 1 1 3E0K ASN A 2 ? UNP Q87M87 ? ? 'expression tag' 297 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3E0K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.36 _exptl_crystal.density_percent_sol 63.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '1.0 M Ammonium sulfate, 0.1 M Bis-Tris pH 5.5, 1% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-04-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97921 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97921 # _reflns.entry_id 3E0K _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.52 _reflns.d_resolution_low 50 _reflns.number_all 8509 _reflns.number_obs 8366 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rsym_value 0.317 _reflns.pdbx_netI_over_sigmaI 2.43 _reflns.B_iso_Wilson_estimate 67.7 _reflns.pdbx_redundancy 9.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.52 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.870 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.43 _reflns_shell.pdbx_redundancy 9.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 197 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3E0K _refine.ls_number_reflns_obs 8351 _refine.ls_number_reflns_all 8351 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.52 _refine.ls_percent_reflns_obs 98.62 _refine.ls_R_factor_obs 0.21684 _refine.ls_R_factor_all 0.21684 _refine.ls_R_factor_R_work 0.21512 _refine.ls_R_factor_R_free 0.25447 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 389 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.936 _refine.correlation_coeff_Fo_to_Fc_free 0.921 _refine.B_iso_mean 45.146 _refine.aniso_B[1][1] 0.83 _refine.aniso_B[2][2] 0.83 _refine.aniso_B[3][3] -1.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.353 _refine.pdbx_overall_ESU_R_Free 0.258 _refine.overall_SU_ML 0.186 _refine.overall_SU_B 16.927 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1164 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 1228 _refine_hist.d_res_high 2.52 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1199 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.413 1.976 ? 1609 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.948 5.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.382 23.833 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.776 15.000 ? 217 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.550 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.096 0.200 ? 173 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 901 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.222 0.200 ? 489 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.313 0.200 ? 815 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.166 0.200 ? 54 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.218 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.183 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.640 1.500 ? 751 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.110 2.000 ? 1149 'X-RAY DIFFRACTION' ? r_scbond_it 1.425 3.000 ? 512 'X-RAY DIFFRACTION' ? r_scangle_it 2.091 4.500 ? 459 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.521 _refine_ls_shell.d_res_low 2.586 _refine_ls_shell.number_reflns_R_work 574 _refine_ls_shell.R_factor_R_work 0.312 _refine_ls_shell.percent_reflns_obs 99.34 _refine_ls_shell.R_factor_R_free 0.372 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 600 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3E0K _struct.title 'Crystal structure of C-termianl domain of N-acetylglutamate synthase from Vibrio parahaemolyticus' _struct.pdbx_descriptor 'Amino-acid acetyltransferase (E.C.2.3.1.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3E0K _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Vibrio parahaemolyticus, N-acetylglutamate synthase, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Acyltransferase, Amino-acid biosynthesis, Arginine biosynthesis, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 10 ? ASP A 12 ? GLY A 305 ASP A 307 5 ? 3 HELX_P HELX_P2 2 ASP A 13 ? GLN A 27 ? ASP A 308 GLN A 322 1 ? 15 HELX_P HELX_P3 3 SER A 34 ? ILE A 42 ? SER A 329 ILE A 337 1 ? 9 HELX_P HELX_P4 4 PRO A 78 ? ARG A 81 ? PRO A 373 ARG A 376 5 ? 4 HELX_P HELX_P5 5 ASN A 84 ? SER A 99 ? ASN A 379 SER A 394 1 ? 16 HELX_P HELX_P6 6 SER A 112 ? GLN A 119 ? SER A 407 GLN A 414 1 ? 8 HELX_P HELX_P7 7 GLY A 125 ? LEU A 129 ? GLY A 420 LEU A 424 5 ? 5 HELX_P HELX_P8 8 PRO A 130 ? ALA A 132 ? PRO A 425 ALA A 427 5 ? 3 HELX_P HELX_P9 9 LYS A 133 ? ASN A 138 ? LYS A 428 ASN A 433 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 70 C ? ? ? 1_555 A MSE 71 N ? ? A GLU 365 A MSE 366 1_555 ? ? ? ? ? ? ? 1.321 ? covale2 covale ? ? A MSE 71 C ? ? ? 1_555 A ALA 72 N ? ? A MSE 366 A ALA 367 1_555 ? ? ? ? ? ? ? 1.323 ? covale3 covale ? ? A TYR 92 C ? ? ? 1_555 A MSE 93 N ? ? A TYR 387 A MSE 388 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 93 C ? ? ? 1_555 A LYS 94 N ? ? A MSE 388 A LYS 389 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 4 ? GLN A 8 ? GLU A 299 GLN A 303 A 2 PHE A 45 ? LYS A 50 ? PHE A 340 LYS A 345 A 3 LEU A 53 ? TYR A 63 ? LEU A 348 TYR A 358 A 4 LYS A 68 ? ILE A 76 ? LYS A 363 ILE A 371 A 5 GLN A 104 ? PHE A 106 ? GLN A 399 PHE A 401 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 5 ? N GLN A 300 O GLU A 49 ? O GLU A 344 A 2 3 N THR A 46 ? N THR A 341 O ALA A 58 ? O ALA A 353 A 3 4 N TYR A 63 ? N TYR A 358 O LYS A 68 ? O LYS A 363 A 4 5 N ALA A 69 ? N ALA A 364 O PHE A 106 ? O PHE A 401 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 501' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH E . ? HOH A 24 . ? 1_555 ? 2 AC1 5 ARG A 81 ? ARG A 376 . ? 1_555 ? 3 AC1 5 ASP A 82 ? ASP A 377 . ? 1_555 ? 4 AC1 5 ARG A 85 ? ARG A 380 . ? 1_555 ? 5 AC1 5 GLY A 86 ? GLY A 381 . ? 1_555 ? 6 AC2 4 TYR A 61 ? TYR A 356 . ? 1_555 ? 7 AC2 4 PRO A 62 ? PRO A 357 . ? 1_555 ? 8 AC2 4 TYR A 63 ? TYR A 358 . ? 1_555 ? 9 AC2 4 ALA A 132 ? ALA A 427 . ? 1_555 ? # _database_PDB_matrix.entry_id 3E0K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3E0K _atom_sites.fract_transf_matrix[1][1] 0.015569 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015569 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008872 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 296 ? ? ? A . n A 1 2 ASN 2 297 ? ? ? A . n A 1 3 ALA 3 298 298 ALA ALA A . n A 1 4 GLU 4 299 299 GLU GLU A . n A 1 5 GLN 5 300 300 GLN GLN A . n A 1 6 VAL 6 301 301 VAL VAL A . n A 1 7 ARG 7 302 302 ARG ARG A . n A 1 8 GLN 8 303 303 GLN GLN A . n A 1 9 ALA 9 304 304 ALA ALA A . n A 1 10 GLY 10 305 305 GLY GLY A . n A 1 11 ILE 11 306 306 ILE ILE A . n A 1 12 ASP 12 307 307 ASP ASP A . n A 1 13 ASP 13 308 308 ASP ASP A . n A 1 14 ILE 14 309 309 ILE ILE A . n A 1 15 GLY 15 310 310 GLY GLY A . n A 1 16 GLY 16 311 311 GLY GLY A . n A 1 17 ILE 17 312 312 ILE ILE A . n A 1 18 LEU 18 313 313 LEU LEU A . n A 1 19 GLU 19 314 314 GLU GLU A . n A 1 20 LEU 20 315 315 LEU LEU A . n A 1 21 ILE 21 316 316 ILE ILE A . n A 1 22 HIS 22 317 317 HIS HIS A . n A 1 23 PRO 23 318 318 PRO PRO A . n A 1 24 LEU 24 319 319 LEU LEU A . n A 1 25 GLU 25 320 320 GLU GLU A . n A 1 26 GLU 26 321 321 GLU GLU A . n A 1 27 GLN 27 322 322 GLN GLN A . n A 1 28 GLY 28 323 323 GLY GLY A . n A 1 29 ILE 29 324 324 ILE ILE A . n A 1 30 LEU 30 325 325 LEU LEU A . n A 1 31 VAL 31 326 ? ? ? A . n A 1 32 ARG 32 327 327 ARG ARG A . n A 1 33 ARG 33 328 328 ARG ARG A . n A 1 34 SER 34 329 329 SER SER A . n A 1 35 ARG 35 330 330 ARG ARG A . n A 1 36 GLU 36 331 331 GLU GLU A . n A 1 37 GLN 37 332 332 GLN GLN A . n A 1 38 LEU 38 333 333 LEU LEU A . n A 1 39 GLU 39 334 334 GLU GLU A . n A 1 40 GLN 40 335 335 GLN GLN A . n A 1 41 GLU 41 336 336 GLU GLU A . n A 1 42 ILE 42 337 337 ILE ILE A . n A 1 43 GLY 43 338 338 GLY GLY A . n A 1 44 LYS 44 339 339 LYS LYS A . n A 1 45 PHE 45 340 340 PHE PHE A . n A 1 46 THR 46 341 341 THR THR A . n A 1 47 ILE 47 342 342 ILE ILE A . n A 1 48 ILE 48 343 343 ILE ILE A . n A 1 49 GLU 49 344 344 GLU GLU A . n A 1 50 LYS 50 345 345 LYS LYS A . n A 1 51 ASP 51 346 346 ASP ASP A . n A 1 52 GLY 52 347 347 GLY GLY A . n A 1 53 LEU 53 348 348 LEU LEU A . n A 1 54 ILE 54 349 349 ILE ILE A . n A 1 55 ILE 55 350 350 ILE ILE A . n A 1 56 GLY 56 351 351 GLY GLY A . n A 1 57 CYS 57 352 352 CYS CYS A . n A 1 58 ALA 58 353 353 ALA ALA A . n A 1 59 ALA 59 354 354 ALA ALA A . n A 1 60 LEU 60 355 355 LEU LEU A . n A 1 61 TYR 61 356 356 TYR TYR A . n A 1 62 PRO 62 357 357 PRO PRO A . n A 1 63 TYR 63 358 358 TYR TYR A . n A 1 64 SER 64 359 359 SER SER A . n A 1 65 GLU 65 360 360 GLU GLU A . n A 1 66 GLU 66 361 361 GLU GLU A . n A 1 67 ARG 67 362 362 ARG ARG A . n A 1 68 LYS 68 363 363 LYS LYS A . n A 1 69 ALA 69 364 364 ALA ALA A . n A 1 70 GLU 70 365 365 GLU GLU A . n A 1 71 MSE 71 366 366 MSE MSE A . n A 1 72 ALA 72 367 367 ALA ALA A . n A 1 73 CYS 73 368 368 CYS CYS A . n A 1 74 VAL 74 369 369 VAL VAL A . n A 1 75 ALA 75 370 370 ALA ALA A . n A 1 76 ILE 76 371 371 ILE ILE A . n A 1 77 HIS 77 372 372 HIS HIS A . n A 1 78 PRO 78 373 373 PRO PRO A . n A 1 79 ASP 79 374 374 ASP ASP A . n A 1 80 TYR 80 375 375 TYR TYR A . n A 1 81 ARG 81 376 376 ARG ARG A . n A 1 82 ASP 82 377 377 ASP ASP A . n A 1 83 GLY 83 378 378 GLY GLY A . n A 1 84 ASN 84 379 379 ASN ASN A . n A 1 85 ARG 85 380 380 ARG ARG A . n A 1 86 GLY 86 381 381 GLY GLY A . n A 1 87 LEU 87 382 382 LEU LEU A . n A 1 88 LEU 88 383 383 LEU LEU A . n A 1 89 LEU 89 384 384 LEU LEU A . n A 1 90 LEU 90 385 385 LEU LEU A . n A 1 91 ASN 91 386 386 ASN ASN A . n A 1 92 TYR 92 387 387 TYR TYR A . n A 1 93 MSE 93 388 388 MSE MSE A . n A 1 94 LYS 94 389 389 LYS LYS A . n A 1 95 HIS 95 390 390 HIS HIS A . n A 1 96 ARG 96 391 391 ARG ARG A . n A 1 97 SER 97 392 392 SER SER A . n A 1 98 LYS 98 393 393 LYS LYS A . n A 1 99 SER 99 394 394 SER SER A . n A 1 100 GLU 100 395 395 GLU GLU A . n A 1 101 ASN 101 396 396 ASN ASN A . n A 1 102 ILE 102 397 397 ILE ILE A . n A 1 103 ASN 103 398 398 ASN ASN A . n A 1 104 GLN 104 399 399 GLN GLN A . n A 1 105 ILE 105 400 400 ILE ILE A . n A 1 106 PHE 106 401 401 PHE PHE A . n A 1 107 VAL 107 402 402 VAL VAL A . n A 1 108 LEU 108 403 403 LEU LEU A . n A 1 109 THR 109 404 404 THR THR A . n A 1 110 THR 110 405 405 THR THR A . n A 1 111 HIS 111 406 406 HIS HIS A . n A 1 112 SER 112 407 407 SER SER A . n A 1 113 LEU 113 408 408 LEU LEU A . n A 1 114 HIS 114 409 409 HIS HIS A . n A 1 115 TRP 115 410 410 TRP TRP A . n A 1 116 PHE 116 411 411 PHE PHE A . n A 1 117 ARG 117 412 412 ARG ARG A . n A 1 118 GLU 118 413 413 GLU GLU A . n A 1 119 GLN 119 414 414 GLN GLN A . n A 1 120 GLY 120 415 415 GLY GLY A . n A 1 121 PHE 121 416 416 PHE PHE A . n A 1 122 TYR 122 417 417 TYR TYR A . n A 1 123 GLU 123 418 418 GLU GLU A . n A 1 124 VAL 124 419 419 VAL VAL A . n A 1 125 GLY 125 420 420 GLY GLY A . n A 1 126 VAL 126 421 421 VAL VAL A . n A 1 127 ASP 127 422 422 ASP ASP A . n A 1 128 TYR 128 423 423 TYR TYR A . n A 1 129 LEU 129 424 424 LEU LEU A . n A 1 130 PRO 130 425 425 PRO PRO A . n A 1 131 GLY 131 426 426 GLY GLY A . n A 1 132 ALA 132 427 427 ALA ALA A . n A 1 133 LYS 133 428 428 LYS LYS A . n A 1 134 GLN 134 429 429 GLN GLN A . n A 1 135 GLY 135 430 430 GLY GLY A . n A 1 136 LEU 136 431 431 LEU ALA A . n A 1 137 TYR 137 432 432 TYR ALA A . n A 1 138 ASN 138 433 433 ASN ALA A . n A 1 139 PHE 139 434 434 PHE PHE A . n A 1 140 GLN 140 435 ? ? ? A . n A 1 141 ARG 141 436 436 ARG ARG A . n A 1 142 LYS 142 437 437 LYS ALA A . n A 1 143 SER 143 438 438 SER SER A . n A 1 144 LYS 144 439 439 LYS LYS A . n A 1 145 ILE 145 440 440 ILE ILE A . n A 1 146 LEU 146 441 441 LEU LEU A . n A 1 147 ALA 147 442 442 ALA ALA A . n A 1 148 LEU 148 443 443 LEU LEU A . n A 1 149 ASP 149 444 444 ASP ASP A . n A 1 150 LEU 150 445 445 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 3 EDO 1 502 502 EDO EDO A . D 3 EDO 1 503 503 EDO EDO A . E 4 HOH 1 1 1 HOH HOH A . E 4 HOH 2 2 2 HOH HOH A . E 4 HOH 3 3 3 HOH HOH A . E 4 HOH 4 4 4 HOH HOH A . E 4 HOH 5 5 5 HOH HOH A . E 4 HOH 6 6 6 HOH HOH A . E 4 HOH 7 7 7 HOH HOH A . E 4 HOH 8 8 8 HOH HOH A . E 4 HOH 9 9 9 HOH HOH A . E 4 HOH 10 10 10 HOH HOH A . E 4 HOH 11 11 11 HOH HOH A . E 4 HOH 12 12 12 HOH HOH A . E 4 HOH 13 13 13 HOH HOH A . E 4 HOH 14 14 14 HOH HOH A . E 4 HOH 15 15 15 HOH HOH A . E 4 HOH 16 16 16 HOH HOH A . E 4 HOH 17 17 17 HOH HOH A . E 4 HOH 18 18 18 HOH HOH A . E 4 HOH 19 19 19 HOH HOH A . E 4 HOH 20 20 20 HOH HOH A . E 4 HOH 21 21 21 HOH HOH A . E 4 HOH 22 22 22 HOH HOH A . E 4 HOH 23 23 23 HOH HOH A . E 4 HOH 24 24 24 HOH HOH A . E 4 HOH 25 25 25 HOH HOH A . E 4 HOH 26 26 26 HOH HOH A . E 4 HOH 27 27 27 HOH HOH A . E 4 HOH 28 28 28 HOH HOH A . E 4 HOH 29 29 29 HOH HOH A . E 4 HOH 30 30 30 HOH HOH A . E 4 HOH 31 31 31 HOH HOH A . E 4 HOH 32 32 32 HOH HOH A . E 4 HOH 33 33 33 HOH HOH A . E 4 HOH 34 34 34 HOH HOH A . E 4 HOH 35 35 35 HOH HOH A . E 4 HOH 36 36 36 HOH HOH A . E 4 HOH 37 37 37 HOH HOH A . E 4 HOH 38 38 38 HOH HOH A . E 4 HOH 39 39 39 HOH HOH A . E 4 HOH 40 40 40 HOH HOH A . E 4 HOH 41 41 41 HOH HOH A . E 4 HOH 42 42 42 HOH HOH A . E 4 HOH 43 43 43 HOH HOH A . E 4 HOH 44 44 44 HOH HOH A . E 4 HOH 45 45 45 HOH HOH A . E 4 HOH 46 46 46 HOH HOH A . E 4 HOH 47 47 47 HOH HOH A . E 4 HOH 48 48 48 HOH HOH A . E 4 HOH 49 49 49 HOH HOH A . E 4 HOH 50 50 50 HOH HOH A . E 4 HOH 51 51 51 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 71 A MSE 366 ? MET SELENOMETHIONINE 2 A MSE 93 A MSE 388 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6370 ? 1 MORE -48 ? 1 'SSA (A^2)' 14490 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 112.7180000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-19 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 18.3553 38.5834 67.7308 0.0668 -0.0383 -0.0587 -0.0196 0.0538 -0.1001 10.0405 6.7416 5.9387 -5.9008 -1.2685 -0.7823 -0.4634 0.5543 -0.0909 -0.6629 -0.7477 0.4268 0.5711 0.2120 -0.1170 'X-RAY DIFFRACTION' 2 ? refined 19.4020 40.8877 58.4493 0.0454 -0.0306 -0.0525 -0.0648 0.0484 -0.0445 5.4759 4.2590 6.3794 -3.5569 -4.3847 4.1228 0.2000 -0.0058 -0.1942 0.0738 0.3023 -0.0935 -0.0990 -0.2368 -0.0564 'X-RAY DIFFRACTION' 3 ? refined 17.0690 45.4871 52.4711 0.2441 -0.0670 0.0117 -0.0290 0.0673 0.0078 16.1938 4.8959 14.0838 -5.0015 -13.2938 5.2802 0.8337 -0.3151 -0.5186 0.0309 0.7468 -0.2698 -0.8002 -1.1278 -0.0757 'X-RAY DIFFRACTION' 4 ? refined 18.6580 28.7816 52.0781 -0.0499 -0.0245 -0.0397 -0.0178 0.0788 -0.0888 3.7457 3.9499 6.5119 -1.9528 2.9874 -2.5246 0.1231 0.1822 -0.3052 -0.1279 -0.2535 0.5672 -0.2699 -0.0966 -0.4396 'X-RAY DIFFRACTION' 5 ? refined 25.0899 23.3092 50.3790 0.2098 0.2139 0.2389 -0.0505 -0.0870 -0.1093 6.0546 10.8448 12.3752 -6.3245 3.7175 0.9206 0.2851 0.0316 -0.3167 -1.0982 -0.3219 0.0035 0.9087 1.2943 0.0494 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 298 A 337 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 338 A 374 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 375 A 397 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 398 A 419 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 A 436 A 445 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 A 420 A 434 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 336 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 356 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 433 ? ? -90.82 33.95 2 1 LYS A 437 ? ? -73.99 38.00 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLN 303 ? CA A A GLN 8 CA 2 1 Y 0 A GLN 303 ? CB A A GLN 8 CB 3 1 Y 0 A GLN 303 ? CG A A GLN 8 CG 4 1 Y 0 A GLN 303 ? CD A A GLN 8 CD 5 1 Y 0 A GLN 303 ? OE1 A A GLN 8 OE1 6 1 Y 0 A GLN 303 ? NE2 A A GLN 8 NE2 7 1 Y 1 A LEU 431 ? CG ? A LEU 136 CG 8 1 Y 1 A LEU 431 ? CD1 ? A LEU 136 CD1 9 1 Y 1 A LEU 431 ? CD2 ? A LEU 136 CD2 10 1 Y 1 A TYR 432 ? CG ? A TYR 137 CG 11 1 Y 1 A TYR 432 ? CD1 ? A TYR 137 CD1 12 1 Y 1 A TYR 432 ? CD2 ? A TYR 137 CD2 13 1 Y 1 A TYR 432 ? CE1 ? A TYR 137 CE1 14 1 Y 1 A TYR 432 ? CE2 ? A TYR 137 CE2 15 1 Y 1 A TYR 432 ? CZ ? A TYR 137 CZ 16 1 Y 1 A TYR 432 ? OH ? A TYR 137 OH 17 1 Y 1 A ASN 433 ? CG ? A ASN 138 CG 18 1 Y 1 A ASN 433 ? OD1 ? A ASN 138 OD1 19 1 Y 1 A ASN 433 ? ND2 ? A ASN 138 ND2 20 1 Y 1 A LYS 437 ? CG ? A LYS 142 CG 21 1 Y 1 A LYS 437 ? CD ? A LYS 142 CD 22 1 Y 1 A LYS 437 ? CE ? A LYS 142 CE 23 1 Y 1 A LYS 437 ? NZ ? A LYS 142 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 296 ? A SER 1 2 1 Y 1 A ASN 297 ? A ASN 2 3 1 Y 1 A VAL 326 ? A VAL 31 4 1 Y 1 A GLN 435 ? A GLN 140 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 1,2-ETHANEDIOL EDO 4 water HOH #