HEADER TRANSFERASE 01-AUG-08 3E0W TITLE CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM LEISHMANIA MEXICANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PK; COMPND 5 EC: 2.7.1.40; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 GENE: PYK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PYRUVATE, KINASE, NAD+ NADH, ADP, PHOSPHOENOLPYRUVATE, PEP, KEYWDS 2 GLYCOLYSIS, TRYPANOSOMATID, LEISHMANIA, MEXICANA, ALLOSTERIC ENZYME, KEYWDS 3 MAGNESIUM, METAL-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.B.TULLOCH,L.A.GILLMORE,M.D.WALKINSHAW REVDAT 7 30-AUG-23 3E0W 1 REMARK REVDAT 6 20-OCT-21 3E0W 1 SEQADV REVDAT 5 13-JUL-11 3E0W 1 VERSN REVDAT 4 24-FEB-09 3E0W 1 VERSN REVDAT 3 04-NOV-08 3E0W 1 JRNL REVDAT 2 23-SEP-08 3E0W 1 JRNL REVDAT 1 19-AUG-08 3E0W 0 JRNL AUTH L.B.TULLOCH,H.P.MORGAN,V.HANNAERT,P.A.MICHELS, JRNL AUTH 2 L.A.FOTHERGILL-GILMORE,M.D.WALKINSHAW JRNL TITL SULPHATE REMOVAL INDUCES A MAJOR CONFORMATIONAL CHANGE IN JRNL TITL 2 LEISHMANIA MEXICANA PYRUVATE KINASE IN THE CRYSTALLINE JRNL TITL 3 STATE. JRNL REF J.MOL.BIOL. V. 383 615 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18775437 JRNL DOI 10.1016/J.JMB.2008.08.037 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.669 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.346 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.853 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3753 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5082 ; 1.052 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 5.412 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;38.156 ;24.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;19.168 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;12.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2816 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1752 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2589 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 146 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2462 ; 0.397 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3886 ; 0.763 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 0.971 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1196 ; 1.669 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 88 REMARK 3 RESIDUE RANGE : A 187 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 63.2577 75.1284 28.6586 REMARK 3 T TENSOR REMARK 3 T11: -0.5636 T22: 0.0087 REMARK 3 T33: -0.1300 T12: 0.1461 REMARK 3 T13: 0.2900 T23: 0.6133 REMARK 3 L TENSOR REMARK 3 L11: 4.3835 L22: 4.1427 REMARK 3 L33: 4.4557 L12: -1.1576 REMARK 3 L13: -0.9341 L23: -0.2763 REMARK 3 S TENSOR REMARK 3 S11: 0.4269 S12: 0.6883 S13: 0.3872 REMARK 3 S21: -0.1599 S22: -0.4019 S23: 0.4510 REMARK 3 S31: -0.1101 S32: -0.1103 S33: -0.0250 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9905 78.6710 53.5683 REMARK 3 T TENSOR REMARK 3 T11: -0.3003 T22: -0.3024 REMARK 3 T33: -0.0787 T12: 0.0394 REMARK 3 T13: 0.3779 T23: 0.2916 REMARK 3 L TENSOR REMARK 3 L11: 10.8676 L22: 7.3808 REMARK 3 L33: 8.5261 L12: 0.5428 REMARK 3 L13: -3.9615 L23: -1.6475 REMARK 3 S TENSOR REMARK 3 S11: -0.2778 S12: 0.1394 S13: 0.6111 REMARK 3 S21: 0.1276 S22: 0.0417 S23: -0.0217 REMARK 3 S31: -0.1602 S32: 0.7731 S33: 0.2360 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 498 REMARK 3 ORIGIN FOR THE GROUP (A): 73.1066 83.1216 7.6283 REMARK 3 T TENSOR REMARK 3 T11: -0.4530 T22: 0.2015 REMARK 3 T33: 0.0756 T12: 0.1271 REMARK 3 T13: 0.2946 T23: 0.7191 REMARK 3 L TENSOR REMARK 3 L11: 3.4639 L22: 5.5184 REMARK 3 L33: 11.3900 L12: -1.7993 REMARK 3 L13: -0.0293 L23: -0.8265 REMARK 3 S TENSOR REMARK 3 S11: -0.2723 S12: 0.3558 S13: 0.1189 REMARK 3 S21: -0.2976 S22: -0.1113 S23: -0.0857 REMARK 3 S31: 0.3294 S32: 0.5514 S33: 0.3835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19992 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : 0.04200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1PKL, CHAIN G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% SATURATED AMMONIUM SULPHATE, 100MM REMARK 280 NA CITRATE, PH 4.2 (SOAKED IN 40% SATURATED AMMONIUM SULPHATE, REMARK 280 100MM NACL, PH 4.2), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 92.27550 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 92.27550 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 92.27550 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 92.27550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.27550 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 92.27550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.27550 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 92.27550 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 92.27550 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 92.27550 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 92.27550 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 92.27550 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 92.27550 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 92.27550 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 92.27550 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 92.27550 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 92.27550 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 92.27550 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 92.27550 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 92.27550 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 92.27550 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 92.27550 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 92.27550 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 92.27550 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 92.27550 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 92.27550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 77820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 184.55100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 92.27550 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 92.27550 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 -92.27550 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 92.27550 REMARK 350 BIOMT2 4 0.000000 0.000000 -1.000000 92.27550 REMARK 350 BIOMT3 4 0.000000 -1.000000 0.000000 92.27550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -40 REMARK 465 GLY A -39 REMARK 465 SER A -38 REMARK 465 SER A -37 REMARK 465 HIS A -36 REMARK 465 HIS A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 SER A -30 REMARK 465 SER A -29 REMARK 465 GLY A -28 REMARK 465 LEU A -27 REMARK 465 VAL A -26 REMARK 465 PRO A -25 REMARK 465 ARG A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 HIS A -21 REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 GLN A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 HIS A 5 REMARK 465 ASN A 6 REMARK 465 HIS A 483 REMARK 465 LYS A 484 REMARK 465 VAL A 485 REMARK 465 LYS A 486 REMARK 465 GLY A 487 REMARK 465 TYR A 488 REMARK 465 ALA A 489 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 11 CD1 REMARK 470 LEU A 447 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 98.46 73.81 REMARK 500 ASP A 13 -70.58 -144.56 REMARK 500 PRO A 14 -95.65 -77.77 REMARK 500 VAL A 15 84.88 53.00 REMARK 500 TYR A 18 -165.46 -70.77 REMARK 500 ARG A 19 1.72 56.77 REMARK 500 ASP A 98 -167.83 -172.65 REMARK 500 GLN A 129 5.14 -66.61 REMARK 500 ASP A 144 70.99 60.48 REMARK 500 GLU A 158 10.20 -64.93 REMARK 500 ARG A 174 75.98 38.46 REMARK 500 SER A 330 -114.07 -98.63 REMARK 500 SER A 355 -80.89 -25.84 REMARK 500 LEU A 357 96.17 -36.17 REMARK 500 GLU A 359 -19.63 -146.72 REMARK 500 ALA A 393 139.71 -175.76 REMARK 500 LYS A 394 -15.28 -178.17 REMARK 500 ARG A 413 82.47 17.24 REMARK 500 ASP A 443 94.89 -68.49 REMARK 500 ASP A 450 60.22 -172.33 REMARK 500 GLU A 454 -74.68 -53.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E0V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM LEISHMANIA MEXICANA IN REMARK 900 COMPLEX WITH SULPHATE IONS DBREF 3E0W A 0 498 UNP Q27686 KPYK_LEIME 1 499 SEQADV 3E0W MET A -40 UNP Q27686 EXPRESSION TAG SEQADV 3E0W GLY A -39 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -38 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -37 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -36 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -35 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -34 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -33 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -32 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -31 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -30 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -29 UNP Q27686 EXPRESSION TAG SEQADV 3E0W GLY A -28 UNP Q27686 EXPRESSION TAG SEQADV 3E0W LEU A -27 UNP Q27686 EXPRESSION TAG SEQADV 3E0W VAL A -26 UNP Q27686 EXPRESSION TAG SEQADV 3E0W PRO A -25 UNP Q27686 EXPRESSION TAG SEQADV 3E0W ARG A -24 UNP Q27686 EXPRESSION TAG SEQADV 3E0W GLY A -23 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -22 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -21 UNP Q27686 EXPRESSION TAG SEQADV 3E0W MET A -20 UNP Q27686 EXPRESSION TAG SEQADV 3E0W GLY A -19 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -18 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -17 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -16 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -15 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -14 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -13 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -12 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -11 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -10 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -9 UNP Q27686 EXPRESSION TAG SEQADV 3E0W GLY A -8 UNP Q27686 EXPRESSION TAG SEQADV 3E0W LEU A -7 UNP Q27686 EXPRESSION TAG SEQADV 3E0W VAL A -6 UNP Q27686 EXPRESSION TAG SEQADV 3E0W PRO A -5 UNP Q27686 EXPRESSION TAG SEQADV 3E0W ARG A -4 UNP Q27686 EXPRESSION TAG SEQADV 3E0W GLY A -3 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A -2 UNP Q27686 EXPRESSION TAG SEQADV 3E0W HIS A -1 UNP Q27686 EXPRESSION TAG SEQADV 3E0W SER A 382 UNP Q27686 GLY 383 CONFLICT SEQADV 3E0W TYR A 389 UNP Q27686 SER 390 CONFLICT SEQADV 3E0W ARG A 404 UNP Q27686 ALA 405 CONFLICT SEQADV 3E0W SER A 405 UNP Q27686 GLY 406 CONFLICT SEQADV 3E0W TRP A 451 UNP Q27686 GLU 452 ENGINEERED MUTATION SEQRES 1 A 539 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 539 LEU VAL PRO ARG GLY SER HIS MET GLY SER SER HIS HIS SEQRES 3 A 539 HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG GLY SER SEQRES 4 A 539 HIS MET SER GLN LEU ALA HIS ASN LEU THR LEU SER ILE SEQRES 5 A 539 PHE ASP PRO VAL ALA ASN TYR ARG ALA ALA ARG ILE ILE SEQRES 6 A 539 CYS THR ILE GLY PRO SER THR GLN SER VAL GLU ALA LEU SEQRES 7 A 539 LYS GLY LEU ILE GLN SER GLY MET SER VAL ALA ARG MET SEQRES 8 A 539 ASN PHE SER HIS GLY SER HIS GLU TYR HIS GLN THR THR SEQRES 9 A 539 ILE ASN ASN VAL ARG GLN ALA ALA ALA GLU LEU GLY VAL SEQRES 10 A 539 ASN ILE ALA ILE ALA LEU ASP THR LYS GLY PRO GLU ILE SEQRES 11 A 539 ARG THR GLY GLN PHE VAL GLY GLY ASP ALA VAL MET GLU SEQRES 12 A 539 ARG GLY ALA THR CYS TYR VAL THR THR ASP PRO ALA PHE SEQRES 13 A 539 ALA ASP LYS GLY THR LYS ASP LYS PHE TYR ILE ASP TYR SEQRES 14 A 539 GLN ASN LEU SER LYS VAL VAL ARG PRO GLY ASN TYR ILE SEQRES 15 A 539 TYR ILE ASP ASP GLY ILE LEU ILE LEU GLN VAL GLN SER SEQRES 16 A 539 HIS GLU ASP GLU GLN THR LEU GLU CYS THR VAL THR ASN SEQRES 17 A 539 SER HIS THR ILE SER ASP ARG ARG GLY VAL ASN LEU PRO SEQRES 18 A 539 GLY CYS ASP VAL ASP LEU PRO ALA VAL SER ALA LYS ASP SEQRES 19 A 539 ARG VAL ASP LEU GLN PHE GLY VAL GLU GLN GLY VAL ASP SEQRES 20 A 539 MET ILE PHE ALA SER PHE ILE ARG SER ALA GLU GLN VAL SEQRES 21 A 539 GLY ASP VAL ARG LYS ALA LEU GLY PRO LYS GLY ARG ASP SEQRES 22 A 539 ILE MET ILE ILE CYS LYS ILE GLU ASN HIS GLN GLY VAL SEQRES 23 A 539 GLN ASN ILE ASP SER ILE ILE GLU GLU SER ASP GLY ILE SEQRES 24 A 539 MET VAL ALA ARG GLY ASP LEU GLY VAL GLU ILE PRO ALA SEQRES 25 A 539 GLU LYS VAL VAL VAL ALA GLN LYS ILE LEU ILE SER LYS SEQRES 26 A 539 CYS ASN VAL ALA GLY LYS PRO VAL ILE CYS ALA THR GLN SEQRES 27 A 539 MET LEU GLU SER MET THR TYR ASN PRO ARG PRO THR ARG SEQRES 28 A 539 ALA GLU VAL SER ASP VAL ALA ASN ALA VAL PHE ASN GLY SEQRES 29 A 539 ALA ASP CYS VAL MET LEU SER GLY GLU THR ALA LYS GLY SEQRES 30 A 539 LYS TYR PRO ASN GLU VAL VAL GLN TYR MET ALA ARG ILE SEQRES 31 A 539 CYS LEU GLU ALA GLN SER ALA LEU ASN GLU TYR VAL PHE SEQRES 32 A 539 PHE ASN SER ILE LYS LYS LEU GLN HIS ILE PRO MET SER SEQRES 33 A 539 ALA ASP GLU ALA VAL CYS SER SER ALA VAL ASN SER VAL SEQRES 34 A 539 TYR GLU THR LYS ALA LYS ALA MET VAL VAL LEU SER ASN SEQRES 35 A 539 THR GLY ARG SER ALA ARG LEU VAL ALA LYS TYR ARG PRO SEQRES 36 A 539 ASN CYS PRO ILE VAL CYS VAL THR THR ARG LEU GLN THR SEQRES 37 A 539 CYS ARG GLN LEU ASN ILE THR GLN GLY VAL GLU SER VAL SEQRES 38 A 539 PHE PHE ASP ALA ASP LYS LEU GLY HIS ASP TRP GLY LYS SEQRES 39 A 539 GLU HIS ARG VAL ALA ALA GLY VAL GLU PHE ALA LYS SER SEQRES 40 A 539 LYS GLY TYR VAL GLN THR GLY ASP TYR CYS VAL VAL ILE SEQRES 41 A 539 HIS ALA ASP HIS LYS VAL LYS GLY TYR ALA ASN GLN THR SEQRES 42 A 539 ARG ILE LEU LEU VAL GLU FORMUL 2 HOH *75(H2 O) HELIX 1 1 SER A 33 GLY A 44 1 12 HELIX 2 2 SER A 56 GLY A 75 1 20 HELIX 3 3 ASP A 112 ALA A 116 5 5 HELIX 4 4 ASN A 130 VAL A 135 1 6 HELIX 5 5 SER A 190 GLN A 203 1 14 HELIX 6 6 SER A 215 GLY A 227 1 13 HELIX 7 7 PRO A 228 ARG A 231 5 4 HELIX 8 8 ASN A 241 ASN A 247 1 7 HELIX 9 9 ASN A 247 GLU A 253 1 7 HELIX 10 10 PRO A 270 GLU A 272 5 3 HELIX 11 11 LYS A 273 GLY A 289 1 17 HELIX 12 12 LEU A 299 TYR A 304 5 6 HELIX 13 13 THR A 309 GLY A 323 1 15 HELIX 14 14 SER A 330 LYS A 335 1 6 HELIX 15 15 TYR A 338 ALA A 353 1 16 HELIX 16 16 VAL A 361 LEU A 369 1 9 HELIX 17 17 SER A 375 LYS A 392 1 18 HELIX 18 18 GLY A 403 TYR A 412 1 10 HELIX 19 19 ARG A 424 LEU A 431 1 8 HELIX 20 20 ASN A 432 THR A 434 5 3 HELIX 21 21 LYS A 453 LYS A 467 1 15 SHEET 1 A 9 ARG A 22 THR A 26 0 SHEET 2 A 9 MET A 45 ASN A 51 1 O ARG A 49 N CYS A 25 SHEET 3 A 9 ALA A 79 ASP A 83 1 O ALA A 81 N MET A 50 SHEET 4 A 9 MET A 207 ALA A 210 1 O PHE A 209 N LEU A 82 SHEET 5 A 9 MET A 234 LYS A 238 1 O ILE A 236 N ILE A 208 SHEET 6 A 9 ILE A 258 VAL A 260 1 O MET A 259 N CYS A 237 SHEET 7 A 9 VAL A 292 CYS A 294 1 O ILE A 293 N ILE A 258 SHEET 8 A 9 CYS A 326 LEU A 329 1 O CYS A 326 N CYS A 294 SHEET 9 A 9 ARG A 22 THR A 26 1 N ILE A 24 O LEU A 329 SHEET 1 B 2 ASP A 98 MET A 101 0 SHEET 2 B 2 HIS A 169 SER A 172 -1 O ILE A 171 N ALA A 99 SHEET 1 C 6 LYS A 123 TYR A 125 0 SHEET 2 C 6 THR A 106 THR A 110 1 N THR A 110 O PHE A 124 SHEET 3 C 6 THR A 160 VAL A 165 -1 O CYS A 163 N CYS A 107 SHEET 4 C 6 LEU A 148 ASP A 157 -1 N GLN A 153 O GLU A 162 SHEET 5 C 6 TYR A 140 ILE A 143 -1 N ILE A 141 O LEU A 150 SHEET 6 C 6 VAL A 177 ASN A 178 -1 O ASN A 178 N TYR A 142 SHEET 1 D 5 VAL A 437 PHE A 441 0 SHEET 2 D 5 ILE A 418 THR A 422 1 N CYS A 420 O GLU A 438 SHEET 3 D 5 MET A 396 LEU A 399 1 N MET A 396 O VAL A 419 SHEET 4 D 5 TYR A 475 HIS A 480 1 O ILE A 479 N LEU A 399 SHEET 5 D 5 GLN A 491 LEU A 496 -1 O ARG A 493 N VAL A 478 CISPEP 1 ILE A 372 PRO A 373 0 7.98 CISPEP 2 ALA A 393 LYS A 394 0 -3.40 CISPEP 3 GLY A 452 LYS A 453 0 2.43 CRYST1 184.551 184.551 184.551 90.00 90.00 90.00 P 42 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005420 0.00000