HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-AUG-08 3E0Y TITLE THE CRYSTAL STRUCTURE OF A CONSERVED DOMAIN FROM A PROTEIN OF TITLE 2 GEOBACTER SULFURREDUCENS PCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 35554; SOURCE 4 STRAIN: PCA; SOURCE 5 GENE: GSU1116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC87688.2, CONSERVED DOMAIN, GEOBACTER SULFURREDUCENS PCA, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, MIDWEST CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 MCSG, PROTEIN STRUCTURE INITIATIVE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,L.BIGELOW,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 3E0Y 1 VERSN REVDAT 2 24-FEB-09 3E0Y 1 VERSN REVDAT 1 30-SEP-08 3E0Y 0 JRNL AUTH K.TAN,L.BIGELOW,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A CONSERVED DOMAIN FROM A PROTEIN JRNL TITL 2 OF GEOBACTER SULFURREDUCENS PCA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 418 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.486 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.395 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2378 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3216 ; 1.901 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 9.580 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;39.011 ;24.330 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;23.809 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1726 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1318 ; 0.285 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1682 ; 0.331 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 99 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.359 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1520 ; 1.004 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2457 ; 1.778 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 867 ; 0.923 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 759 ; 1.505 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9918 7.6444 89.6845 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: -0.1939 REMARK 3 T33: -0.0297 T12: 0.1751 REMARK 3 T13: -0.0262 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 5.9558 L22: 7.8995 REMARK 3 L33: 8.7723 L12: -1.2174 REMARK 3 L13: -0.9055 L23: 0.9577 REMARK 3 S TENSOR REMARK 3 S11: -0.3874 S12: -0.1726 S13: 0.3469 REMARK 3 S21: 0.1462 S22: 0.2385 S23: 0.1919 REMARK 3 S31: 0.1248 S32: -0.3121 S33: 0.1489 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 74 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5479 33.6328 97.9082 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: -0.0349 REMARK 3 T33: -0.0094 T12: 0.2472 REMARK 3 T13: -0.0290 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 6.7801 L22: 6.8114 REMARK 3 L33: 6.7514 L12: -1.1669 REMARK 3 L13: -1.1417 L23: 0.8204 REMARK 3 S TENSOR REMARK 3 S11: 0.1686 S12: 0.0927 S13: -0.3092 REMARK 3 S21: -0.1971 S22: -0.1796 S23: -0.3012 REMARK 3 S31: 0.2062 S32: -0.2985 S33: 0.0110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB048736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945, 0.97959 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8896 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15%(V/V) ETHANOL, 0.1M HEPES, 0.2M REMARK 280 MGCL., PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.39167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.78333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.78333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.39167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS REMARK 300 EXPERIMENTALLY UNKNOWN. THE A AND B CHAINS ARE EXPECTED TO FORM A REMARK 300 DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 65 REMARK 465 ASN A 66 REMARK 465 ALA A 67 REMARK 465 MSE A 68 REMARK 465 GLN A 69 REMARK 465 ARG A 70 REMARK 465 ALA A 71 REMARK 465 ASN A 72 REMARK 465 ARG A 73 REMARK 465 GLU A 74 REMARK 465 ARG A 171 REMARK 465 TYR A 172 REMARK 465 PHE A 173 REMARK 465 PRO A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 GLN A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 LYS A 239 REMARK 465 ALA A 240 REMARK 465 ALA A 241 REMARK 465 GLU A 242 REMARK 465 ALA A 243 REMARK 465 SER A 244 REMARK 465 ALA A 245 REMARK 465 SER B 65 REMARK 465 ASN B 66 REMARK 465 ALA B 67 REMARK 465 MSE B 68 REMARK 465 GLN B 69 REMARK 465 ARG B 70 REMARK 465 ALA B 71 REMARK 465 ASN B 72 REMARK 465 ARG B 73 REMARK 465 ASP B 167 REMARK 465 PRO B 168 REMARK 465 ARG B 169 REMARK 465 TYR B 170 REMARK 465 ARG B 171 REMARK 465 TYR B 172 REMARK 465 PHE B 173 REMARK 465 PRO B 174 REMARK 465 GLU B 175 REMARK 465 LEU B 176 REMARK 465 GLN B 177 REMARK 465 GLU B 178 REMARK 465 GLU B 179 REMARK 465 LYS B 239 REMARK 465 ALA B 240 REMARK 465 ALA B 241 REMARK 465 GLU B 242 REMARK 465 ALA B 243 REMARK 465 SER B 244 REMARK 465 ALA B 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 75 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 170 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 TYR A 181 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 HIS B 75 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 180 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 170 C TYR A 170 O 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 76 -104.62 -41.41 REMARK 500 LEU A 94 -64.05 -28.82 REMARK 500 PRO A 95 -56.10 -23.71 REMARK 500 VAL A 113 137.85 -178.29 REMARK 500 ALA A 127 -30.93 -133.18 REMARK 500 ILE A 144 -77.14 -59.87 REMARK 500 PRO A 168 147.82 -39.70 REMARK 500 ARG A 169 88.44 179.19 REMARK 500 TYR A 181 81.54 -152.10 REMARK 500 LYS A 192 -72.10 -32.03 REMARK 500 LYS A 193 -72.43 -65.50 REMARK 500 HIS B 75 89.24 174.46 REMARK 500 GLU B 77 72.87 -64.80 REMARK 500 SER B 89 152.86 -21.31 REMARK 500 SER B 90 -81.75 -52.96 REMARK 500 ASP B 146 -90.92 -73.56 REMARK 500 TYR B 181 -162.96 172.20 REMARK 500 ASN B 182 141.75 -175.70 REMARK 500 ASP B 191 -159.92 -133.25 REMARK 500 SER B 205 -161.19 -112.12 REMARK 500 ALA B 235 -79.27 -61.84 REMARK 500 SER B 236 30.87 -70.21 REMARK 500 SER B 237 84.65 -173.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 129 HIS B 130 147.71 REMARK 500 GLY B 138 LYS B 139 -134.87 REMARK 500 GLY B 147 ILE B 148 142.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 137 23.6 L L OUTSIDE RANGE REMARK 500 ILE A 144 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC87688.2 RELATED DB: TARGETDB DBREF 3E0Y A 68 245 UNP Q74E48 Q74E48_GEOSL 68 245 DBREF 3E0Y B 68 245 UNP Q74E48 Q74E48_GEOSL 68 245 SEQADV 3E0Y SER A 65 UNP Q74E48 EXPRESSION TAG SEQADV 3E0Y ASN A 66 UNP Q74E48 EXPRESSION TAG SEQADV 3E0Y ALA A 67 UNP Q74E48 EXPRESSION TAG SEQADV 3E0Y SER B 65 UNP Q74E48 EXPRESSION TAG SEQADV 3E0Y ASN B 66 UNP Q74E48 EXPRESSION TAG SEQADV 3E0Y ALA B 67 UNP Q74E48 EXPRESSION TAG SEQRES 1 A 181 SER ASN ALA MSE GLN ARG ALA ASN ARG GLU HIS LEU GLU SEQRES 2 A 181 ILE ILE SER LEU GLU GLU ILE SER MSE LEU VAL SER SER SEQRES 3 A 181 ASP PHE ASP LEU PRO GLU VAL LEU GLN HIS VAL THR ALA SEQRES 4 A 181 LYS VAL ALA THR GLN LEU LYS VAL SER VAL CYS ASN ILE SEQRES 5 A 181 TYR LEU ARG GLU GLY ASP GLU VAL VAL LEU ALA ALA THR SEQRES 6 A 181 HIS GLY PHE ASP PRO ALA PHE ILE GLY LYS ILE ARG ILE SEQRES 7 A 181 LYS ILE GLY ASP GLY ILE THR GLY SER VAL ALA ARG ASP SEQRES 8 A 181 GLY GLN TYR ILE SER LEU SER ARG ALA SER GLN ASP PRO SEQRES 9 A 181 ARG TYR ARG TYR PHE PRO GLU LEU GLN GLU GLU LYS TYR SEQRES 10 A 181 ASN SER MSE LEU SER PHE PRO ILE GLY ASP LYS LYS GLU SEQRES 11 A 181 VAL TYR GLY VAL ILE ASN LEU ASN THR THR SER ILE ARG SEQRES 12 A 181 SER PHE HIS GLU ASP GLU ILE TYR PHE VAL SER ILE ILE SEQRES 13 A 181 ALA ASN LEU ILE LEU THR ALA ILE LYS LEU ARG GLN GLN SEQRES 14 A 181 VAL ALA SER SER ARG LYS ALA ALA GLU ALA SER ALA SEQRES 1 B 181 SER ASN ALA MSE GLN ARG ALA ASN ARG GLU HIS LEU GLU SEQRES 2 B 181 ILE ILE SER LEU GLU GLU ILE SER MSE LEU VAL SER SER SEQRES 3 B 181 ASP PHE ASP LEU PRO GLU VAL LEU GLN HIS VAL THR ALA SEQRES 4 B 181 LYS VAL ALA THR GLN LEU LYS VAL SER VAL CYS ASN ILE SEQRES 5 B 181 TYR LEU ARG GLU GLY ASP GLU VAL VAL LEU ALA ALA THR SEQRES 6 B 181 HIS GLY PHE ASP PRO ALA PHE ILE GLY LYS ILE ARG ILE SEQRES 7 B 181 LYS ILE GLY ASP GLY ILE THR GLY SER VAL ALA ARG ASP SEQRES 8 B 181 GLY GLN TYR ILE SER LEU SER ARG ALA SER GLN ASP PRO SEQRES 9 B 181 ARG TYR ARG TYR PHE PRO GLU LEU GLN GLU GLU LYS TYR SEQRES 10 B 181 ASN SER MSE LEU SER PHE PRO ILE GLY ASP LYS LYS GLU SEQRES 11 B 181 VAL TYR GLY VAL ILE ASN LEU ASN THR THR SER ILE ARG SEQRES 12 B 181 SER PHE HIS GLU ASP GLU ILE TYR PHE VAL SER ILE ILE SEQRES 13 B 181 ALA ASN LEU ILE LEU THR ALA ILE LYS LEU ARG GLN GLN SEQRES 14 B 181 VAL ALA SER SER ARG LYS ALA ALA GLU ALA SER ALA MODRES 3E0Y MSE A 86 MET SELENOMETHIONINE MODRES 3E0Y MSE A 184 MET SELENOMETHIONINE MODRES 3E0Y MSE B 86 MET SELENOMETHIONINE MODRES 3E0Y MSE B 184 MET SELENOMETHIONINE HET MSE A 86 8 HET MSE A 184 8 HET MSE B 86 8 HET MSE B 184 8 HET NA A 1 1 HET NA B 2 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) HELIX 1 1 SER A 80 SER A 89 1 10 HELIX 2 2 ASP A 93 LEU A 109 1 17 HELIX 3 3 ASP A 133 ILE A 137 5 5 HELIX 4 4 ILE A 148 GLY A 156 1 9 HELIX 5 5 HIS A 210 SER A 237 1 28 HELIX 6 6 SER B 80 SER B 89 1 10 HELIX 7 7 ASP B 93 LEU B 109 1 17 HELIX 8 8 ASP B 133 ILE B 137 5 5 HELIX 9 9 GLY B 147 GLY B 156 1 10 HELIX 10 10 HIS B 210 ALA B 235 1 26 SHEET 1 A 6 ARG A 141 LYS A 143 0 SHEET 2 A 6 GLU A 123 HIS A 130 -1 N VAL A 124 O ILE A 142 SHEET 3 A 6 CYS A 114 GLU A 120 -1 N ILE A 116 O ALA A 127 SHEET 4 A 6 VAL A 195 THR A 203 -1 O VAL A 198 N TYR A 117 SHEET 5 A 6 TYR A 181 GLY A 190 -1 N ILE A 189 O TYR A 196 SHEET 6 A 6 ILE A 159 ALA A 164 -1 N LEU A 161 O MSE A 184 SHEET 1 B 6 ARG B 141 LYS B 143 0 SHEET 2 B 6 GLU B 123 HIS B 130 -1 N VAL B 124 O ILE B 142 SHEET 3 B 6 VAL B 113 GLU B 120 -1 N ILE B 116 O ALA B 127 SHEET 4 B 6 VAL B 195 ASN B 202 -1 O VAL B 198 N TYR B 117 SHEET 5 B 6 ASN B 182 GLY B 190 -1 N ILE B 189 O TYR B 196 SHEET 6 B 6 ILE B 159 ARG B 163 -1 N LEU B 161 O MSE B 184 LINK C SER A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N LEU A 87 1555 1555 1.33 LINK C SER A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N LEU A 185 1555 1555 1.33 LINK C SER B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N LEU B 87 1555 1555 1.33 LINK C SER B 183 N MSE B 184 1555 1555 1.32 LINK C MSE B 184 N LEU B 185 1555 1555 1.34 LINK OH TYR A 117 NA NA A 1 1555 1555 2.74 LINK OH TYR B 117 NA NA B 2 1555 1555 2.56 SITE 1 AC1 4 ASN A 115 TYR A 117 ASN A 200 ASN A 202 SITE 1 AC2 3 ASN B 115 TYR B 117 ASN B 200 CRYST1 59.421 59.421 223.175 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016829 0.009716 0.000000 0.00000 SCALE2 0.000000 0.019433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004481 0.00000