HEADER OXIDOREDUCTASE 01-AUG-08 3E10 TITLE CRYSTAL STRUCTURE OF PUTATIVE NADH OXIDASE (NP_348178.1) FROM TITLE 2 CLOSTRIDIUM ACETOBUTYLICUM AT 1.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NADH OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NITROREDUCTASE FAMILY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM; SOURCE 3 ORGANISM_TAXID: 1488; SOURCE 4 GENE: NP_348178.1, CA_C1551; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_348178.1, PUTATIVE NADH OXIDASE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 NITROREDUCTASE FAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3E10 1 REMARK SEQADV REVDAT 4 24-JUL-19 3E10 1 REMARK LINK REVDAT 3 25-OCT-17 3E10 1 REMARK REVDAT 2 24-FEB-09 3E10 1 VERSN REVDAT 1 12-AUG-08 3E10 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE NADH OXIDASE (NP_348178.1) JRNL TITL 2 FROM CLOSTRIDIUM ACETOBUTYLICUM AT 1.40 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 275 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 505 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.732 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3070 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2222 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4166 ; 1.569 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5489 ; 1.012 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 6.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;36.530 ;25.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;11.942 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3311 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 630 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2408 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1447 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1604 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 415 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1871 ; 2.490 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 700 ; 1.428 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2906 ; 3.060 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1476 ; 4.363 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1225 ; 5.868 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5941 ; 1.773 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 519 ; 6.841 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5216 ; 3.706 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. HEPES (EPE) AND ETHYLENE GLYCOL (EDO) MODELED REMARK 3 ARE PRESENT IN CRYSTALLIZATION/CRYO CONDITIONS. THE FMN REMARK 3 MOLECULES ARE ASSIGNED BASED ON CLEARLY DEFINED DENSITY. REMARK 4 REMARK 4 3E10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97908,0.97849 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.273 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : 0.50100 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0000% PEG-8000, 0.1M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.03850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.76400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.03850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.76400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CD CE NZ REMARK 470 LYS A 61 CD CE NZ REMARK 470 LYS A 152 CE NZ REMARK 470 MSE B 1 CG SE CE REMARK 470 ASP B 2 CG OD1 OD2 REMARK 470 GLU B 21 CD OE1 OE2 REMARK 470 GLU B 51 CD OE1 OE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 GLU B 119 CD OE1 OE2 REMARK 470 GLU B 120 CD OE1 OE2 REMARK 470 LYS B 126 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 147 O HOH B 578 1.97 REMARK 500 O HOH B 600 O HOH B 607 2.10 REMARK 500 NZ LYS A 83 O HOH A 656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 115 -74.85 -132.73 REMARK 500 ASN A 148 -49.04 70.14 REMARK 500 GLU A 165 -34.87 72.90 REMARK 500 ALA B 115 -74.63 -131.17 REMARK 500 ASN B 148 42.24 -151.81 REMARK 500 GLU B 165 -34.27 69.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390674 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3E10 A 1 167 UNP Q97IT9 Q97IT9_CLOAB 1 167 DBREF 3E10 B 1 167 UNP Q97IT9 Q97IT9_CLOAB 1 167 SEQADV 3E10 GLY A 0 UNP Q97IT9 EXPRESSION TAG SEQADV 3E10 GLY B 0 UNP Q97IT9 EXPRESSION TAG SEQRES 1 A 168 GLY MSE ASP ILE ILE ASN ASN ARG ARG SER ILE ARG ASN SEQRES 2 A 168 TYR LYS GLY LYS LYS VAL GLU LYS GLU LYS ILE GLU LYS SEQRES 3 A 168 LEU LEU ARG ALA ALA MSE GLN ALA PRO SER ALA GLY ASN SEQRES 4 A 168 GLN GLN PRO TRP GLU PHE ILE VAL LEU GLU ASP ARG GLU SEQRES 5 A 168 ASN ILE ASP LYS LEU SER ASN PHE SER LYS TYR ALA ASN SEQRES 6 A 168 SER LEU LYS THR ALA PRO LEU ALA ILE VAL LEU LEU ALA SEQRES 7 A 168 ASP GLU GLU LYS MSE LYS ILE SER GLU MSE TRP GLU GLN SEQRES 8 A 168 ASP MSE ALA ALA ALA ALA GLU ASN ILE LEU LEU GLU ALA SEQRES 9 A 168 ALA TYR LEU ASP LEU GLY ALA VAL TRP LEU GLY ALA GLN SEQRES 10 A 168 PRO ILE GLU GLU ARG VAL LYS ASN LEU LYS GLU MSE PHE SEQRES 11 A 168 ASN LEU LYS SER ASN ILE LYS PRO PHE CYS VAL ILE SER SEQRES 12 A 168 VAL GLY TYR PRO GLU ASN SER GLU ASN LYS PHE ILE ASP SEQRES 13 A 168 ARG PHE ASP ALA LYS ARG ILE HIS ILE GLU LYS TYR SEQRES 1 B 168 GLY MSE ASP ILE ILE ASN ASN ARG ARG SER ILE ARG ASN SEQRES 2 B 168 TYR LYS GLY LYS LYS VAL GLU LYS GLU LYS ILE GLU LYS SEQRES 3 B 168 LEU LEU ARG ALA ALA MSE GLN ALA PRO SER ALA GLY ASN SEQRES 4 B 168 GLN GLN PRO TRP GLU PHE ILE VAL LEU GLU ASP ARG GLU SEQRES 5 B 168 ASN ILE ASP LYS LEU SER ASN PHE SER LYS TYR ALA ASN SEQRES 6 B 168 SER LEU LYS THR ALA PRO LEU ALA ILE VAL LEU LEU ALA SEQRES 7 B 168 ASP GLU GLU LYS MSE LYS ILE SER GLU MSE TRP GLU GLN SEQRES 8 B 168 ASP MSE ALA ALA ALA ALA GLU ASN ILE LEU LEU GLU ALA SEQRES 9 B 168 ALA TYR LEU ASP LEU GLY ALA VAL TRP LEU GLY ALA GLN SEQRES 10 B 168 PRO ILE GLU GLU ARG VAL LYS ASN LEU LYS GLU MSE PHE SEQRES 11 B 168 ASN LEU LYS SER ASN ILE LYS PRO PHE CYS VAL ILE SER SEQRES 12 B 168 VAL GLY TYR PRO GLU ASN SER GLU ASN LYS PHE ILE ASP SEQRES 13 B 168 ARG PHE ASP ALA LYS ARG ILE HIS ILE GLU LYS TYR MODRES 3E10 MSE A 31 MET SELENOMETHIONINE MODRES 3E10 MSE A 82 MET SELENOMETHIONINE MODRES 3E10 MSE A 87 MET SELENOMETHIONINE MODRES 3E10 MSE A 92 MET SELENOMETHIONINE MODRES 3E10 MSE A 128 MET SELENOMETHIONINE MODRES 3E10 MSE B 1 MET SELENOMETHIONINE MODRES 3E10 MSE B 31 MET SELENOMETHIONINE MODRES 3E10 MSE B 82 MET SELENOMETHIONINE MODRES 3E10 MSE B 87 MET SELENOMETHIONINE MODRES 3E10 MSE B 92 MET SELENOMETHIONINE MODRES 3E10 MSE B 128 MET SELENOMETHIONINE HET MSE A 31 8 HET MSE A 82 8 HET MSE A 87 13 HET MSE A 92 8 HET MSE A 128 8 HET MSE B 1 5 HET MSE B 31 8 HET MSE B 82 8 HET MSE B 87 13 HET MSE B 92 8 HET MSE B 128 13 HET FMN A 501 31 HET EPE A 502 15 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EPE B 502 15 HET FMN B 501 31 HET EDO B 503 4 HET EDO B 504 6 HET EDO B 505 4 HET EDO B 506 4 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN EPE HEPES HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 5 EDO 10(C2 H6 O2) FORMUL 17 HOH *505(H2 O) HELIX 1 1 ASP A 2 ARG A 7 1 6 HELIX 2 2 GLU A 19 GLN A 32 1 14 HELIX 3 3 SER A 35 GLN A 39 5 5 HELIX 4 4 ASP A 49 SER A 57 1 9 HELIX 5 5 ASN A 58 SER A 60 5 3 HELIX 6 6 ALA A 63 ALA A 69 5 7 HELIX 7 7 GLU A 80 MSE A 82 5 3 HELIX 8 8 ILE A 84 GLU A 86 5 3 HELIX 9 9 MSE A 87 LEU A 106 1 20 HELIX 10 10 ILE A 118 PHE A 129 1 12 HELIX 11 11 ASP A 158 LYS A 160 5 3 HELIX 12 12 ASP B 2 ARG B 7 1 6 HELIX 13 13 GLU B 19 GLN B 32 1 14 HELIX 14 14 SER B 35 GLN B 39 5 5 HELIX 15 15 ASP B 49 SER B 57 1 9 HELIX 16 16 ASN B 58 SER B 60 5 3 HELIX 17 17 ALA B 63 THR B 68 5 6 HELIX 18 18 GLU B 80 MSE B 82 5 3 HELIX 19 19 ILE B 84 GLU B 86 5 3 HELIX 20 20 MSE B 87 LEU B 106 1 20 HELIX 21 21 ILE B 118 PHE B 129 1 12 HELIX 22 22 ASP B 158 LYS B 160 5 3 SHEET 1 A 5 GLY A 109 GLY A 114 0 SHEET 2 A 5 ILE A 135 GLY A 144 -1 O GLY A 144 N GLY A 109 SHEET 3 A 5 LEU A 71 ASP A 78 -1 N ALA A 77 O LYS A 136 SHEET 4 A 5 TRP A 42 LEU A 47 -1 N LEU A 47 O ALA A 72 SHEET 5 A 5 ILE B 162 ILE B 164 1 O HIS B 163 N VAL A 46 SHEET 1 B 5 ILE A 162 ILE A 164 0 SHEET 2 B 5 TRP B 42 LEU B 47 1 O VAL B 46 N HIS A 163 SHEET 3 B 5 LEU B 71 ASP B 78 -1 O VAL B 74 N ILE B 45 SHEET 4 B 5 ILE B 135 GLY B 144 -1 O LYS B 136 N ALA B 77 SHEET 5 B 5 GLY B 109 GLY B 114 -1 N GLY B 109 O GLY B 144 LINK C ALA A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N GLN A 32 1555 1555 1.33 LINK C LYS A 81 N MSE A 82 1555 1555 1.32 LINK C MSE A 82 N LYS A 83 1555 1555 1.32 LINK C GLU A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N TRP A 88 1555 1555 1.34 LINK C ASP A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N ALA A 93 1555 1555 1.33 LINK C GLU A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N PHE A 129 1555 1555 1.33 LINK C MSE B 1 N ASP B 2 1555 1555 1.34 LINK C ALA B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N GLN B 32 1555 1555 1.34 LINK C LYS B 81 N MSE B 82 1555 1555 1.32 LINK C MSE B 82 N LYS B 83 1555 1555 1.32 LINK C GLU B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N TRP B 88 1555 1555 1.34 LINK C ASP B 91 N MSE B 92 1555 1555 1.33 LINK C MSE B 92 N ALA B 93 1555 1555 1.33 LINK C GLU B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N PHE B 129 1555 1555 1.33 CISPEP 1 GLN A 116 PRO A 117 0 -2.70 CISPEP 2 GLN B 116 PRO B 117 0 -2.23 SITE 1 AC1 22 ARG A 7 ARG A 8 SER A 9 ARG A 11 SITE 2 AC1 22 TYR A 62 VAL A 111 TRP A 112 LEU A 113 SITE 3 AC1 22 GLY A 114 ARG A 156 EDO A 504 EDO A 506 SITE 4 AC1 22 HOH A 517 HOH A 521 HOH A 597 PRO B 34 SITE 5 AC1 22 SER B 35 ALA B 36 ASN B 38 MSE B 87 SITE 6 AC1 22 GLN B 90 EPE B 502 SITE 1 AC2 9 GLY A 37 GLU A 51 EDO A 508 HOH A 562 SITE 2 AC2 9 HOH A 630 HOH A 685 ARG B 11 FMN B 501 SITE 3 AC2 9 EDO B 504 SITE 1 AC3 8 ASN A 52 LYS A 55 LEU A 56 PHE A 129 SITE 2 AC3 8 HOH A 540 HOH A 563 HOH A 637 HOH A 741 SITE 1 AC4 4 ARG A 121 FMN A 501 MSE B 87 EPE B 502 SITE 1 AC5 3 ARG A 156 EDO A 506 ASN B 38 SITE 1 AC6 5 SER A 9 ARG A 11 FMN A 501 EDO A 505 SITE 2 AC6 5 HOH A 521 SITE 1 AC7 7 GLU A 102 TYR A 105 HOH A 545 HOH A 640 SITE 2 AC7 7 ASP B 2 ILE B 3 ILE B 4 SITE 1 AC8 8 GLY A 37 ASN A 38 EPE A 502 HOH A 656 SITE 2 AC8 8 HOH A 669 HOH A 685 HOH A 750 FMN B 501 SITE 1 AC9 5 ARG A 11 FMN A 501 EDO A 504 GLY B 37 SITE 2 AC9 5 HOH B 673 SITE 1 BC1 24 PRO A 34 SER A 35 ALA A 36 ASN A 38 SITE 2 BC1 24 MSE A 87 GLN A 90 ASP A 91 EPE A 502 SITE 3 BC1 24 EDO A 508 ARG B 7 ARG B 8 SER B 9 SITE 4 BC1 24 ARG B 11 TYR B 62 VAL B 111 TRP B 112 SITE 5 BC1 24 LEU B 113 GLY B 114 ARG B 156 EDO B 504 SITE 6 BC1 24 HOH B 517 HOH B 525 HOH B 527 HOH B 556 SITE 1 BC2 5 HIS B 163 ILE B 164 LYS B 166 TYR B 167 SITE 2 BC2 5 HOH B 706 SITE 1 BC3 8 ILE A 84 MSE A 87 EPE A 502 TYR B 62 SITE 2 BC3 8 ARG B 121 FMN B 501 HOH B 625 HOH B 637 SITE 1 BC4 7 ASN B 52 LYS B 55 LEU B 56 MSE B 128 SITE 2 BC4 7 PHE B 129 HOH B 581 HOH B 727 SITE 1 BC5 8 SER B 60 LYS B 61 TYR B 62 ILE B 118 SITE 2 BC5 8 ARG B 121 HOH B 629 HOH B 658 HOH B 694 CRYST1 82.077 83.528 51.891 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019271 0.00000