HEADER HYDROLASE 04-AUG-08 3E1E TITLE CRYSTAL STRUCTURE OF A THIOESTERASE FAMILY PROTEIN FROM SILICIBACTER TITLE 2 POMEROYI. NORTHEAST STRUCTURAL GENOMICS TARGET SIR180A COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOESTERASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI; SOURCE 3 ORGANISM_TAXID: 89184; SOURCE 4 GENE: SPO3603; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS THIOESTERASE FAMILY PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SEETHARAMAN,M.ABASHIDZE,H.WANG,H.JANJUA,E.L.FOOTE,R.XIAO,R.NAIR, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 3 21-FEB-24 3E1E 1 REMARK REVDAT 2 24-FEB-09 3E1E 1 VERSN REVDAT 1 30-SEP-08 3E1E 0 JRNL AUTH J.SEETHARAMAN,M.ABASHIDZE,H.WANG,H.JANJUA,E.L.FOOTE,R.XIAO, JRNL AUTH 2 R.NAIR,T.B.ACTON,B.ROST,G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF A THIOESTERASE FAMILY PROTEIN FROM JRNL TITL 2 SILICIBACTER POMEROYI. NORTHEAST STRUCTURAL GENOMICS TARGET JRNL TITL 3 SIR180A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 93999.980 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 119711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 11792 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 19476 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2075 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -2.94000 REMARK 3 B33 (A**2) : 4.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.280 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.480 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.400 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.510 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 41.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3E1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : 0.29700 REMARK 200 FOR SHELL : 12.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MGCL2, 100 MM TRIS PH9, 22% REMARK 280 PEG100, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.05250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.00750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.00750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.05250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 4 REMARK 465 ALA A 5 REMARK 465 GLU B 1 REMARK 465 GLU D 1 REMARK 465 PRO D 2 REMARK 465 ARG D 3 REMARK 465 PHE D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL G 105 CB VAL G 105 CG1 -0.349 REMARK 500 VAL G 105 C VAL G 105 O -0.205 REMARK 500 PRO G 107 CB PRO G 107 CG -0.317 REMARK 500 GLY G 108 C GLY G 108 O -0.234 REMARK 500 ARG G 109 N ARG G 109 CA -0.163 REMARK 500 LEU G 111 CG LEU G 111 CD2 -0.242 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 110 N - CA - CB ANGL. DEV. = -22.3 DEGREES REMARK 500 ARG B 109 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 THR B 110 N - CA - CB ANGL. DEV. = -21.2 DEGREES REMARK 500 ARG C 109 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 THR C 110 N - CA - CB ANGL. DEV. = -20.4 DEGREES REMARK 500 ARG D 109 CB - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 THR D 110 N - CA - CB ANGL. DEV. = -24.3 DEGREES REMARK 500 ARG E 109 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 THR E 110 N - CA - CB ANGL. DEV. = -22.1 DEGREES REMARK 500 THR F 110 N - CA - CB ANGL. DEV. = -23.3 DEGREES REMARK 500 GLY G 108 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG G 109 N - CA - CB ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG G 109 NE - CZ - NH1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG G 109 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG H 109 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 THR H 110 N - CA - CB ANGL. DEV. = -20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 48 -169.20 -100.75 REMARK 500 ARG A 122 -117.05 -81.95 REMARK 500 ASP A 123 47.31 -80.58 REMARK 500 ARG B 3 94.29 40.91 REMARK 500 PHE B 4 108.43 86.22 REMARK 500 ARG B 35 -109.11 -112.78 REMARK 500 VAL B 36 116.91 88.53 REMARK 500 ALA B 78 118.00 -165.41 REMARK 500 ARG B 122 -65.87 -103.61 REMARK 500 ASP C 29 -64.08 -94.07 REMARK 500 ARG C 122 -93.76 -107.65 REMARK 500 ARG D 109 -80.68 -33.87 REMARK 500 ARG D 122 -111.88 -95.34 REMARK 500 ASP D 123 46.67 -78.48 REMARK 500 PRO E 33 -50.53 -18.53 REMARK 500 GLN E 48 -166.31 -103.27 REMARK 500 ARG E 109 -62.15 -29.48 REMARK 500 ARG E 122 -118.61 -87.85 REMARK 500 GLN F 48 -169.13 -109.79 REMARK 500 GLN G 48 -167.91 -101.37 REMARK 500 ARG G 109 -124.79 74.64 REMARK 500 ARG G 122 -104.88 -89.32 REMARK 500 GLN H 48 -157.21 -101.14 REMARK 500 ARG H 122 -95.70 -100.83 REMARK 500 ASP H 123 53.10 -92.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY G 108 ARG G 109 56.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SIR180A RELATED DB: TARGETDB DBREF 3E1E A 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 DBREF 3E1E B 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 DBREF 3E1E C 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 DBREF 3E1E D 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 DBREF 3E1E E 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 DBREF 3E1E F 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 DBREF 3E1E G 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 DBREF 3E1E H 1 141 UNP Q5LMG0 Q5LMG0_SILPO 8 148 SEQRES 1 A 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 A 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 A 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 A 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 A 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 A 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 A 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 A 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 A 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 A 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 A 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY SEQRES 1 B 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 B 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 B 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 B 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 B 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 B 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 B 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 B 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 B 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 B 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 B 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY SEQRES 1 C 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 C 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 C 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 C 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 C 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 C 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 C 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 C 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 C 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 C 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 C 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY SEQRES 1 D 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 D 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 D 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 D 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 D 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 D 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 D 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 D 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 D 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 D 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 D 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY SEQRES 1 E 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 E 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 E 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 E 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 E 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 E 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 E 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 E 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 E 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 E 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 E 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY SEQRES 1 F 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 F 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 F 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 F 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 F 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 F 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 F 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 F 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 F 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 F 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 F 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY SEQRES 1 G 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 G 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 G 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 G 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 G 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 G 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 G 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 G 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 G 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 G 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 G 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY SEQRES 1 H 141 GLU PRO ARG PHE ALA GLY TYR ALA GLN LYS VAL ARG ASP SEQRES 2 H 141 SER PHE ALA ARG GLN PRO VAL MET ALA THR LEU GLY ALA SEQRES 3 H 141 ARG ILE ASP THR LEU LEU PRO GLY ARG VAL GLU LEU CYS SEQRES 4 H 141 MET PRO TYR ASP ARG ALA LEU THR GLN GLN HIS GLY PHE SEQRES 5 H 141 LEU HIS ALA GLY ILE VAL SER THR VAL LEU ASP SER ALA SEQRES 6 H 141 CYS GLY TYR ALA ALA PHE SER LEU MET GLU GLU GLU ALA SEQRES 7 H 141 ALA VAL LEU THR VAL GLU PHE LYS VAL ASN PHE LEU ASN SEQRES 8 H 141 PRO ALA GLU GLY GLU ARG PHE ALA PHE ARG ALA GLU VAL SEQRES 9 H 141 VAL LYS PRO GLY ARG THR LEU THR VAL ALA THR ALA THR SEQRES 10 H 141 ALA TYR ALA PHE ARG ASP GLY GLU GLU ARG ALA ILE ALA SEQRES 11 H 141 THR MET THR ALA THR LEU MET ALA LEU ILE GLY FORMUL 9 HOH *406(H2 O) HELIX 1 1 GLY A 6 ARG A 17 1 12 HELIX 2 2 GLN A 18 GLY A 25 1 8 HELIX 3 3 ASP A 43 THR A 47 5 5 HELIX 4 4 HIS A 54 SER A 72 1 19 HELIX 5 5 GLY B 6 ARG B 17 1 12 HELIX 6 6 GLN B 18 GLY B 25 1 8 HELIX 7 7 ASP B 43 THR B 47 5 5 HELIX 8 8 HIS B 54 SER B 72 1 19 HELIX 9 9 GLY C 6 ALA C 16 1 11 HELIX 10 10 GLN C 18 GLY C 25 1 8 HELIX 11 11 ASP C 43 THR C 47 5 5 HELIX 12 12 HIS C 54 SER C 72 1 19 HELIX 13 13 GLY D 6 ARG D 17 1 12 HELIX 14 14 GLN D 18 GLY D 25 1 8 HELIX 15 15 ASP D 43 THR D 47 5 5 HELIX 16 16 HIS D 54 SER D 72 1 19 HELIX 17 17 GLY E 6 ARG E 17 1 12 HELIX 18 18 GLN E 18 GLY E 25 1 8 HELIX 19 19 ASP E 43 THR E 47 5 5 HELIX 20 20 HIS E 54 SER E 72 1 19 HELIX 21 21 GLY F 6 ARG F 17 1 12 HELIX 22 22 GLN F 18 GLY F 25 1 8 HELIX 23 23 ASP F 43 THR F 47 5 5 HELIX 24 24 HIS F 54 SER F 72 1 19 HELIX 25 25 GLY G 6 ARG G 17 1 12 HELIX 26 26 GLN G 18 LEU G 24 1 7 HELIX 27 27 ASP G 43 THR G 47 5 5 HELIX 28 28 HIS G 54 SER G 72 1 19 HELIX 29 29 GLY H 6 ALA H 16 1 11 HELIX 30 30 GLN H 18 LEU H 24 1 7 HELIX 31 31 ASP H 43 THR H 47 5 5 HELIX 32 32 HIS H 54 SER H 72 1 19 SHEET 1 A12 ARG A 27 LEU A 32 0 SHEET 2 A12 ARG A 35 PRO A 41 -1 O GLU A 37 N ASP A 29 SHEET 3 A12 ARG A 97 LYS A 106 -1 O ALA A 102 N VAL A 36 SHEET 4 A12 LEU A 111 PHE A 121 -1 O VAL A 113 N VAL A 105 SHEET 5 A12 GLU A 126 ILE A 140 -1 O LEU A 136 N THR A 112 SHEET 6 A12 ALA A 78 PHE A 89 -1 N ALA A 79 O LEU A 139 SHEET 7 A12 ALA H 79 PHE H 89 -1 O VAL H 87 N PHE A 85 SHEET 8 A12 GLU H 126 LEU H 139 -1 O LEU H 139 N ALA H 79 SHEET 9 A12 LEU H 111 PHE H 121 -1 N THR H 112 O LEU H 136 SHEET 10 A12 ARG H 97 PRO H 107 -1 N VAL H 105 O VAL H 113 SHEET 11 A12 ARG H 35 PRO H 41 -1 N VAL H 36 O ALA H 102 SHEET 12 A12 ARG H 27 LEU H 32 -1 N ASP H 29 O GLU H 37 SHEET 1 B12 ARG B 27 THR B 30 0 SHEET 2 B12 GLU B 37 PRO B 41 -1 O GLU B 37 N ASP B 29 SHEET 3 B12 ARG B 97 LYS B 106 -1 O PHE B 100 N LEU B 38 SHEET 4 B12 LEU B 111 PHE B 121 -1 O VAL B 113 N VAL B 105 SHEET 5 B12 GLU B 126 LEU B 139 -1 O LEU B 136 N THR B 112 SHEET 6 B12 ALA B 79 PHE B 89 -1 N ALA B 79 O LEU B 139 SHEET 7 B12 ALA F 79 PHE F 89 -1 O PHE F 85 N VAL B 87 SHEET 8 B12 GLU F 125 LEU F 139 -1 O LEU F 139 N ALA F 79 SHEET 9 B12 LEU F 111 ARG F 122 -1 N THR F 112 O LEU F 136 SHEET 10 B12 ARG F 97 LYS F 106 -1 N VAL F 105 O VAL F 113 SHEET 11 B12 ARG F 35 PRO F 41 -1 N VAL F 36 O ALA F 102 SHEET 12 B12 ARG F 27 LEU F 32 -1 N LEU F 32 O ARG F 35 SHEET 1 C12 ARG C 27 LEU C 32 0 SHEET 2 C12 ARG C 35 PRO C 41 -1 O GLU C 37 N ASP C 29 SHEET 3 C12 ARG C 97 PRO C 107 -1 O ALA C 102 N VAL C 36 SHEET 4 C12 LEU C 111 PHE C 121 -1 O VAL C 113 N VAL C 105 SHEET 5 C12 GLU C 126 LEU C 139 -1 O LEU C 136 N THR C 112 SHEET 6 C12 ALA C 79 PHE C 89 -1 N ALA C 79 O LEU C 139 SHEET 7 C12 ALA D 78 PHE D 89 -1 O PHE D 85 N VAL C 87 SHEET 8 C12 GLU D 126 ILE D 140 -1 O LEU D 139 N ALA D 79 SHEET 9 C12 LEU D 111 PHE D 121 -1 N THR D 112 O LEU D 136 SHEET 10 C12 ARG D 97 LYS D 106 -1 N VAL D 105 O VAL D 113 SHEET 11 C12 ARG D 35 PRO D 41 -1 N LEU D 38 O PHE D 100 SHEET 12 C12 ARG D 27 LEU D 32 -1 N ASP D 29 O GLU D 37 SHEET 1 D12 ARG E 27 LEU E 32 0 SHEET 2 D12 ARG E 35 PRO E 41 -1 O ARG E 35 N LEU E 32 SHEET 3 D12 ARG E 97 LYS E 106 -1 O ALA E 102 N VAL E 36 SHEET 4 D12 LEU E 111 PHE E 121 -1 O VAL E 113 N VAL E 105 SHEET 5 D12 GLU E 126 ILE E 140 -1 O LEU E 136 N THR E 112 SHEET 6 D12 ALA E 78 PHE E 89 -1 N LEU E 81 O MET E 137 SHEET 7 D12 ALA G 78 PHE G 89 -1 O PHE G 85 N VAL E 87 SHEET 8 D12 GLU G 126 ILE G 140 -1 O LEU G 139 N ALA G 79 SHEET 9 D12 LEU G 111 PHE G 121 -1 N ALA G 116 O MET G 132 SHEET 10 D12 ARG G 97 PRO G 107 -1 N VAL G 105 O VAL G 113 SHEET 11 D12 ARG G 35 PRO G 41 -1 N VAL G 36 O ALA G 102 SHEET 12 D12 ARG G 27 LEU G 32 -1 N LEU G 32 O ARG G 35 CRYST1 88.105 107.315 112.015 90.00 90.00 90.00 P 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008927 0.00000