data_3E25 # _entry.id 3E25 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3E25 pdb_00003e25 10.2210/pdb3e25/pdb RCSB RCSB048779 ? ? WWPDB D_1000048779 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-03-20 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3E25 _pdbx_database_status.recvd_initial_deposition_date 2008-08-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3E26 _pdbx_database_related.details 'the same protein, apo form' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pereira, P.J.B.' 1 'Empadinhas, N.' 2 'Costa, M.S.' 3 'Macedo-Ribeiro, S.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Mycobacterium tuberculosis glucosyl-3-phosphoglycerate synthase: structure of a key enzyme in methylglucose lipopolysaccharide biosynthesis ; 'Plos One' 3 e3748 e3748 2008 ? US 1932-6203 ? ? 19015727 10.1371/journal.pone.0003748 1 'Identification of the mycobacterial glucosyl-3-phosphoglycerate synthase' 'Fems Microbiol.Lett.' 280 195 202 2008 FMLED7 NE 0378-1097 2102 ? 18221489 10.1111/j.1574-6968.2007.01064.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pereira, P.J.B.' 1 ? primary 'Empadinhas, N.' 2 ? primary 'Albuquerque, L.' 3 ? primary 'Sa-Moura, B.' 4 ? primary 'da Costa, M.S.' 5 ? primary 'Macedo-Ribeiro, S.' 6 ? 1 'Empadinhas, N.' 7 ? 1 'Albuquerque, L.' 8 ? 1 'Mendes, V.' 9 ? 1 'Macedo-Ribeiro, S.' 10 ? 1 'da Costa, M.S.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative uncharacterized protein' 35938.012 1 2.4.1.- ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "URIDINE-5'-DIPHOSPHATE" 404.161 1 ? ? ? ? 4 non-polymer syn '3-PHOSPHOGLYCERIC ACID' 186.057 1 ? ? ? ? 5 water nat water 18.015 85 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'glucosyl-3-phosphoglycerate synthase, GpgS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTASELVAGDLAGGRAPGALPLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLD SGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQL VKSFYRRPLQVSDVTSGVCATGGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTF DRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFLPGGPDDSDYTRHTWPVSLVDRPPMKV MRPRKLAAALEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTASELVAGDLAGGRAPGALPLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLD SGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQL VKSFYRRPLQVSDVTSGVCATGGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTF DRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFLPGGPDDSDYTRHTWPVSLVDRPPMKV MRPRKLAAALEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "URIDINE-5'-DIPHOSPHATE" UDP 4 '3-PHOSPHOGLYCERIC ACID' 3PG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ALA n 1 4 SER n 1 5 GLU n 1 6 LEU n 1 7 VAL n 1 8 ALA n 1 9 GLY n 1 10 ASP n 1 11 LEU n 1 12 ALA n 1 13 GLY n 1 14 GLY n 1 15 ARG n 1 16 ALA n 1 17 PRO n 1 18 GLY n 1 19 ALA n 1 20 LEU n 1 21 PRO n 1 22 LEU n 1 23 ASP n 1 24 THR n 1 25 THR n 1 26 TRP n 1 27 HIS n 1 28 ARG n 1 29 PRO n 1 30 GLY n 1 31 TRP n 1 32 THR n 1 33 ILE n 1 34 GLY n 1 35 GLU n 1 36 LEU n 1 37 GLU n 1 38 ALA n 1 39 ALA n 1 40 LYS n 1 41 ALA n 1 42 GLY n 1 43 ARG n 1 44 THR n 1 45 ILE n 1 46 SER n 1 47 VAL n 1 48 VAL n 1 49 LEU n 1 50 PRO n 1 51 ALA n 1 52 LEU n 1 53 ASN n 1 54 GLU n 1 55 GLU n 1 56 ALA n 1 57 THR n 1 58 ILE n 1 59 GLU n 1 60 SER n 1 61 VAL n 1 62 ILE n 1 63 ASP n 1 64 SER n 1 65 ILE n 1 66 SER n 1 67 PRO n 1 68 LEU n 1 69 VAL n 1 70 ASP n 1 71 GLY n 1 72 LEU n 1 73 VAL n 1 74 ASP n 1 75 GLU n 1 76 LEU n 1 77 ILE n 1 78 VAL n 1 79 LEU n 1 80 ASP n 1 81 SER n 1 82 GLY n 1 83 SER n 1 84 THR n 1 85 ASP n 1 86 ASP n 1 87 THR n 1 88 GLU n 1 89 ILE n 1 90 ARG n 1 91 ALA n 1 92 ILE n 1 93 ALA n 1 94 SER n 1 95 GLY n 1 96 ALA n 1 97 ARG n 1 98 VAL n 1 99 VAL n 1 100 SER n 1 101 ARG n 1 102 GLU n 1 103 GLN n 1 104 ALA n 1 105 LEU n 1 106 PRO n 1 107 GLU n 1 108 VAL n 1 109 PRO n 1 110 VAL n 1 111 ARG n 1 112 PRO n 1 113 GLY n 1 114 LYS n 1 115 GLY n 1 116 GLU n 1 117 ALA n 1 118 LEU n 1 119 TRP n 1 120 ARG n 1 121 SER n 1 122 LEU n 1 123 ALA n 1 124 ALA n 1 125 THR n 1 126 SER n 1 127 GLY n 1 128 ASP n 1 129 ILE n 1 130 VAL n 1 131 VAL n 1 132 PHE n 1 133 ILE n 1 134 ASP n 1 135 SER n 1 136 ASP n 1 137 LEU n 1 138 ILE n 1 139 ASN n 1 140 PRO n 1 141 HIS n 1 142 PRO n 1 143 LEU n 1 144 PHE n 1 145 VAL n 1 146 PRO n 1 147 TRP n 1 148 LEU n 1 149 VAL n 1 150 GLY n 1 151 PRO n 1 152 LEU n 1 153 LEU n 1 154 THR n 1 155 GLY n 1 156 GLU n 1 157 GLY n 1 158 ILE n 1 159 GLN n 1 160 LEU n 1 161 VAL n 1 162 LYS n 1 163 SER n 1 164 PHE n 1 165 TYR n 1 166 ARG n 1 167 ARG n 1 168 PRO n 1 169 LEU n 1 170 GLN n 1 171 VAL n 1 172 SER n 1 173 ASP n 1 174 VAL n 1 175 THR n 1 176 SER n 1 177 GLY n 1 178 VAL n 1 179 CYS n 1 180 ALA n 1 181 THR n 1 182 GLY n 1 183 GLY n 1 184 GLY n 1 185 ARG n 1 186 VAL n 1 187 THR n 1 188 GLU n 1 189 LEU n 1 190 VAL n 1 191 ALA n 1 192 ARG n 1 193 PRO n 1 194 LEU n 1 195 LEU n 1 196 ALA n 1 197 ALA n 1 198 LEU n 1 199 ARG n 1 200 PRO n 1 201 GLU n 1 202 LEU n 1 203 GLY n 1 204 CYS n 1 205 VAL n 1 206 LEU n 1 207 GLN n 1 208 PRO n 1 209 LEU n 1 210 SER n 1 211 GLY n 1 212 GLU n 1 213 TYR n 1 214 ALA n 1 215 ALA n 1 216 SER n 1 217 ARG n 1 218 GLU n 1 219 LEU n 1 220 LEU n 1 221 THR n 1 222 SER n 1 223 LEU n 1 224 PRO n 1 225 PHE n 1 226 ALA n 1 227 PRO n 1 228 GLY n 1 229 TYR n 1 230 GLY n 1 231 VAL n 1 232 GLU n 1 233 ILE n 1 234 GLY n 1 235 LEU n 1 236 LEU n 1 237 ILE n 1 238 ASP n 1 239 THR n 1 240 PHE n 1 241 ASP n 1 242 ARG n 1 243 LEU n 1 244 GLY n 1 245 LEU n 1 246 ASP n 1 247 ALA n 1 248 ILE n 1 249 ALA n 1 250 GLN n 1 251 VAL n 1 252 ASN n 1 253 LEU n 1 254 GLY n 1 255 VAL n 1 256 ARG n 1 257 ALA n 1 258 HIS n 1 259 ARG n 1 260 ASN n 1 261 ARG n 1 262 PRO n 1 263 LEU n 1 264 ASP n 1 265 GLU n 1 266 LEU n 1 267 GLY n 1 268 ALA n 1 269 MET n 1 270 SER n 1 271 ARG n 1 272 GLN n 1 273 VAL n 1 274 ILE n 1 275 ALA n 1 276 THR n 1 277 LEU n 1 278 LEU n 1 279 SER n 1 280 ARG n 1 281 CYS n 1 282 GLY n 1 283 ILE n 1 284 PRO n 1 285 ASP n 1 286 SER n 1 287 GLY n 1 288 VAL n 1 289 GLY n 1 290 LEU n 1 291 THR n 1 292 GLN n 1 293 PHE n 1 294 LEU n 1 295 PRO n 1 296 GLY n 1 297 GLY n 1 298 PRO n 1 299 ASP n 1 300 ASP n 1 301 SER n 1 302 ASP n 1 303 TYR n 1 304 THR n 1 305 ARG n 1 306 HIS n 1 307 THR n 1 308 TRP n 1 309 PRO n 1 310 VAL n 1 311 SER n 1 312 LEU n 1 313 VAL n 1 314 ASP n 1 315 ARG n 1 316 PRO n 1 317 PRO n 1 318 MET n 1 319 LYS n 1 320 VAL n 1 321 MET n 1 322 ARG n 1 323 PRO n 1 324 ARG n 1 325 LYS n 1 326 LEU n 1 327 ALA n 1 328 ALA n 1 329 ALA n 1 330 LEU n 1 331 GLU n 1 332 HIS n 1 333 HIS n 1 334 HIS n 1 335 HIS n 1 336 HIS n 1 337 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MT1246, Rv1208' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3PG non-polymer . '3-PHOSPHOGLYCERIC ACID' ? 'C3 H7 O7 P' 186.057 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UDP 'RNA linking' . "URIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O12 P2' 404.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 VAL 7 7 ? ? ? A . n A 1 8 ALA 8 8 ? ? ? A . n A 1 9 GLY 9 9 ? ? ? A . n A 1 10 ASP 10 10 ? ? ? A . n A 1 11 LEU 11 11 ? ? ? A . n A 1 12 ALA 12 12 ? ? ? A . n A 1 13 GLY 13 13 ? ? ? A . n A 1 14 GLY 14 14 ? ? ? A . n A 1 15 ARG 15 15 ? ? ? A . n A 1 16 ALA 16 16 ? ? ? A . n A 1 17 PRO 17 17 ? ? ? A . n A 1 18 GLY 18 18 ? ? ? A . n A 1 19 ALA 19 19 ? ? ? A . n A 1 20 LEU 20 20 ? ? ? A . n A 1 21 PRO 21 21 ? ? ? A . n A 1 22 LEU 22 22 ? ? ? A . n A 1 23 ASP 23 23 ? ? ? A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 ALA 117 117 117 ALA ALA A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 TRP 119 119 119 TRP TRP A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 HIS 141 141 141 HIS HIS A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 TRP 147 147 147 TRP TRP A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 ARG 167 167 ? ? ? A . n A 1 168 PRO 168 168 ? ? ? A . n A 1 169 LEU 169 169 ? ? ? A . n A 1 170 GLN 170 170 ? ? ? A . n A 1 171 VAL 171 171 ? ? ? A . n A 1 172 SER 172 172 ? ? ? A . n A 1 173 ASP 173 173 ? ? ? A . n A 1 174 VAL 174 174 ? ? ? A . n A 1 175 THR 175 175 ? ? ? A . n A 1 176 SER 176 176 ? ? ? A . n A 1 177 GLY 177 177 ? ? ? A . n A 1 178 VAL 178 178 ? ? ? A . n A 1 179 CYS 179 179 ? ? ? A . n A 1 180 ALA 180 180 ? ? ? A . n A 1 181 THR 181 181 ? ? ? A . n A 1 182 GLY 182 182 ? ? ? A . n A 1 183 GLY 183 183 ? ? ? A . n A 1 184 GLY 184 184 ? ? ? A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 ALA 197 197 197 ALA ALA A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 GLY 203 203 203 GLY GLY A . n A 1 204 CYS 204 204 204 CYS CYS A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 GLN 207 207 207 GLN GLN A . n A 1 208 PRO 208 208 208 PRO PRO A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 GLU 212 212 212 GLU GLU A . n A 1 213 TYR 213 213 213 TYR TYR A . n A 1 214 ALA 214 214 214 ALA ALA A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 GLU 218 218 218 GLU GLU A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 THR 221 221 221 THR THR A . n A 1 222 SER 222 222 222 SER SER A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 PRO 224 224 224 PRO PRO A . n A 1 225 PHE 225 225 225 PHE PHE A . n A 1 226 ALA 226 226 226 ALA ALA A . n A 1 227 PRO 227 227 227 PRO PRO A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 TYR 229 229 229 TYR TYR A . n A 1 230 GLY 230 230 230 GLY GLY A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ILE 233 233 233 ILE ILE A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 ASP 238 238 238 ASP ASP A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 PHE 240 240 240 PHE PHE A . n A 1 241 ASP 241 241 241 ASP ASP A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 GLY 244 244 244 GLY GLY A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 ASP 246 246 246 ASP ASP A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 ILE 248 248 248 ILE ILE A . n A 1 249 ALA 249 249 249 ALA ALA A . n A 1 250 GLN 250 250 250 GLN GLN A . n A 1 251 VAL 251 251 251 VAL VAL A . n A 1 252 ASN 252 252 252 ASN ASN A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 GLY 254 254 254 GLY GLY A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 ALA 257 257 ? ? ? A . n A 1 258 HIS 258 258 ? ? ? A . n A 1 259 ARG 259 259 ? ? ? A . n A 1 260 ASN 260 260 260 ASN ASN A . n A 1 261 ARG 261 261 261 ARG ARG A . n A 1 262 PRO 262 262 262 PRO PRO A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 ASP 264 264 264 ASP ASP A . n A 1 265 GLU 265 265 265 GLU GLU A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 GLY 267 267 267 GLY GLY A . n A 1 268 ALA 268 268 268 ALA ALA A . n A 1 269 MET 269 269 269 MET MET A . n A 1 270 SER 270 270 270 SER SER A . n A 1 271 ARG 271 271 271 ARG ARG A . n A 1 272 GLN 272 272 272 GLN GLN A . n A 1 273 VAL 273 273 273 VAL VAL A . n A 1 274 ILE 274 274 274 ILE ILE A . n A 1 275 ALA 275 275 275 ALA ALA A . n A 1 276 THR 276 276 276 THR THR A . n A 1 277 LEU 277 277 277 LEU LEU A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 SER 279 279 279 SER SER A . n A 1 280 ARG 280 280 280 ARG ARG A . n A 1 281 CYS 281 281 281 CYS CYS A . n A 1 282 GLY 282 282 282 GLY GLY A . n A 1 283 ILE 283 283 283 ILE ILE A . n A 1 284 PRO 284 284 284 PRO PRO A . n A 1 285 ASP 285 285 285 ASP ASP A . n A 1 286 SER 286 286 286 SER SER A . n A 1 287 GLY 287 287 287 GLY GLY A . n A 1 288 VAL 288 288 288 VAL VAL A . n A 1 289 GLY 289 289 289 GLY GLY A . n A 1 290 LEU 290 290 290 LEU LEU A . n A 1 291 THR 291 291 291 THR THR A . n A 1 292 GLN 292 292 292 GLN GLN A . n A 1 293 PHE 293 293 293 PHE PHE A . n A 1 294 LEU 294 294 ? ? ? A . n A 1 295 PRO 295 295 ? ? ? A . n A 1 296 GLY 296 296 ? ? ? A . n A 1 297 GLY 297 297 ? ? ? A . n A 1 298 PRO 298 298 ? ? ? A . n A 1 299 ASP 299 299 ? ? ? A . n A 1 300 ASP 300 300 ? ? ? A . n A 1 301 SER 301 301 ? ? ? A . n A 1 302 ASP 302 302 ? ? ? A . n A 1 303 TYR 303 303 303 TYR TYR A . n A 1 304 THR 304 304 304 THR THR A . n A 1 305 ARG 305 305 305 ARG ARG A . n A 1 306 HIS 306 306 306 HIS HIS A . n A 1 307 THR 307 307 307 THR THR A . n A 1 308 TRP 308 308 308 TRP TRP A . n A 1 309 PRO 309 309 309 PRO PRO A . n A 1 310 VAL 310 310 310 VAL VAL A . n A 1 311 SER 311 311 311 SER SER A . n A 1 312 LEU 312 312 312 LEU LEU A . n A 1 313 VAL 313 313 313 VAL VAL A . n A 1 314 ASP 314 314 314 ASP ASP A . n A 1 315 ARG 315 315 315 ARG ARG A . n A 1 316 PRO 316 316 316 PRO PRO A . n A 1 317 PRO 317 317 317 PRO PRO A . n A 1 318 MET 318 318 318 MET MET A . n A 1 319 LYS 319 319 319 LYS LYS A . n A 1 320 VAL 320 320 320 VAL VAL A . n A 1 321 MET 321 321 321 MET MET A . n A 1 322 ARG 322 322 322 ARG ARG A . n A 1 323 PRO 323 323 323 PRO PRO A . n A 1 324 ARG 324 324 ? ? ? A . n A 1 325 LYS 325 325 ? ? ? A . n A 1 326 LEU 326 326 ? ? ? A . n A 1 327 ALA 327 327 ? ? ? A . n A 1 328 ALA 328 328 ? ? ? A . n A 1 329 ALA 329 329 ? ? ? A . n A 1 330 LEU 330 330 ? ? ? A . n A 1 331 GLU 331 331 ? ? ? A . n A 1 332 HIS 332 332 ? ? ? A . n A 1 333 HIS 333 333 ? ? ? A . n A 1 334 HIS 334 334 ? ? ? A . n A 1 335 HIS 335 335 ? ? ? A . n A 1 336 HIS 336 336 ? ? ? A . n A 1 337 HIS 337 337 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 338 1 MG MG A . C 3 UDP 1 339 1 UDP UDP A . D 4 3PG 1 340 1 3PG MP3 A . E 5 HOH 1 341 1 HOH HOH A . E 5 HOH 2 342 2 HOH HOH A . E 5 HOH 3 343 3 HOH HOH A . E 5 HOH 4 344 4 HOH HOH A . E 5 HOH 5 345 5 HOH HOH A . E 5 HOH 6 346 6 HOH HOH A . E 5 HOH 7 347 7 HOH HOH A . E 5 HOH 8 348 8 HOH HOH A . E 5 HOH 9 349 9 HOH HOH A . E 5 HOH 10 350 10 HOH HOH A . E 5 HOH 11 351 11 HOH HOH A . E 5 HOH 12 352 12 HOH HOH A . E 5 HOH 13 353 13 HOH HOH A . E 5 HOH 14 354 14 HOH HOH A . E 5 HOH 15 355 15 HOH HOH A . E 5 HOH 16 356 16 HOH HOH A . E 5 HOH 17 357 17 HOH HOH A . E 5 HOH 18 358 18 HOH HOH A . E 5 HOH 19 359 19 HOH HOH A . E 5 HOH 20 360 20 HOH HOH A . E 5 HOH 21 361 21 HOH HOH A . E 5 HOH 22 362 22 HOH HOH A . E 5 HOH 23 363 23 HOH HOH A . E 5 HOH 24 364 24 HOH HOH A . E 5 HOH 25 365 25 HOH HOH A . E 5 HOH 26 366 26 HOH HOH A . E 5 HOH 27 367 27 HOH HOH A . E 5 HOH 28 368 28 HOH HOH A . E 5 HOH 29 369 29 HOH HOH A . E 5 HOH 30 370 30 HOH HOH A . E 5 HOH 31 371 31 HOH HOH A . E 5 HOH 32 372 32 HOH HOH A . E 5 HOH 33 373 33 HOH HOH A . E 5 HOH 34 374 34 HOH HOH A . E 5 HOH 35 375 35 HOH HOH A . E 5 HOH 36 376 36 HOH HOH A . E 5 HOH 37 377 37 HOH HOH A . E 5 HOH 38 378 38 HOH HOH A . E 5 HOH 39 379 39 HOH HOH A . E 5 HOH 40 380 40 HOH HOH A . E 5 HOH 41 381 41 HOH HOH A . E 5 HOH 42 382 42 HOH HOH A . E 5 HOH 43 383 43 HOH HOH A . E 5 HOH 44 384 44 HOH HOH A . E 5 HOH 45 385 46 HOH HOH A . E 5 HOH 46 386 47 HOH HOH A . E 5 HOH 47 387 48 HOH HOH A . E 5 HOH 48 388 49 HOH HOH A . E 5 HOH 49 389 50 HOH HOH A . E 5 HOH 50 390 51 HOH HOH A . E 5 HOH 51 391 52 HOH HOH A . E 5 HOH 52 392 53 HOH HOH A . E 5 HOH 53 393 55 HOH HOH A . E 5 HOH 54 394 56 HOH HOH A . E 5 HOH 55 395 57 HOH HOH A . E 5 HOH 56 396 58 HOH HOH A . E 5 HOH 57 397 59 HOH HOH A . E 5 HOH 58 398 60 HOH HOH A . E 5 HOH 59 399 61 HOH HOH A . E 5 HOH 60 400 63 HOH HOH A . E 5 HOH 61 401 64 HOH HOH A . E 5 HOH 62 402 65 HOH HOH A . E 5 HOH 63 403 67 HOH HOH A . E 5 HOH 64 404 68 HOH HOH A . E 5 HOH 65 405 69 HOH HOH A . E 5 HOH 66 406 70 HOH HOH A . E 5 HOH 67 407 71 HOH HOH A . E 5 HOH 68 408 72 HOH HOH A . E 5 HOH 69 409 73 HOH HOH A . E 5 HOH 70 410 74 HOH HOH A . E 5 HOH 71 411 75 HOH HOH A . E 5 HOH 72 412 76 HOH HOH A . E 5 HOH 73 413 77 HOH HOH A . E 5 HOH 74 414 78 HOH HOH A . E 5 HOH 75 415 79 HOH HOH A . E 5 HOH 76 416 80 HOH HOH A . E 5 HOH 77 417 82 HOH HOH A . E 5 HOH 78 418 83 HOH HOH A . E 5 HOH 79 419 84 HOH HOH A . E 5 HOH 80 420 85 HOH HOH A . E 5 HOH 81 421 86 HOH HOH A . E 5 HOH 82 422 87 HOH HOH A . E 5 HOH 83 423 88 HOH HOH A . E 5 HOH 84 424 89 HOH HOH A . E 5 HOH 85 425 90 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine)' ? 1 DNA 'data collection' . ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 PHASER phasing . ? 5 # _cell.entry_id 3E25 _cell.length_a 100.309 _cell.length_b 100.309 _cell.length_c 127.035 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3E25 _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3E25 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.45 _exptl_crystal.density_percent_sol 72.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;0.1M Tris pH 8.0, 0.5% polyethyleneglycol monomethyl ether 5000, 0.65M Na-K phosphate tetrahydrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC Q4R' _diffrn_detector.pdbx_collection_date 2007-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Diamond (111), Ge(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-3' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-3 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.931 # _reflns.entry_id 3E25 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.70 _reflns.d_resolution_low 70.90 _reflns.number_all 17283 _reflns.number_obs 16855 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.B_iso_Wilson_estimate 42.210 _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.394 _reflns_shell.pdbx_Rsym_value 0.330 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2481 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3E25 _refine.ls_number_reflns_obs 15796 _refine.ls_number_reflns_all 15796 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.335 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 91.430 _refine.ls_R_factor_obs 0.2053 _refine.ls_R_factor_all 0.2053 _refine.ls_R_factor_R_work 0.2036 _refine.ls_R_factor_R_free 0.2351 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.15 _refine.ls_number_reflns_R_free 814 _refine.ls_number_reflns_R_work 14982 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_max 1.00 _refine.occupancy_min 0.66 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.122 _refine.aniso_B[1][1] 8.676 _refine.aniso_B[2][2] 8.676 _refine.aniso_B[3][3] -17.351 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol 32.422 _refine.solvent_model_param_ksol 0.324 _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'Rubrobacter xylanophilus mannosyl-3-phosphoglycerate synthase (Sa-Moura et al., Acta Cryst. (2008). F64, 760-763)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.340 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_max 115.71 _refine.B_iso_min 23.94 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error 25.280 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2054 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 2176 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 32.335 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 2134 0.010 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 2914 1.410 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 343 0.080 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 369 0.006 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 806 17.732 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.700 2.869 6 83.000 2260 . 0.281 0.356 . 113 . 2373 . . 'X-RAY DIFFRACTION' 2.869 3.091 6 88.000 2403 . 0.251 0.270 . 124 . 2527 . . 'X-RAY DIFFRACTION' 3.091 3.401 6 92.000 2520 . 0.229 0.265 . 123 . 2643 . . 'X-RAY DIFFRACTION' 3.401 3.893 6 96.000 2571 . 0.188 0.245 . 165 . 2736 . . 'X-RAY DIFFRACTION' 3.893 4.902 6 96.000 2631 . 0.158 0.173 . 148 . 2779 . . 'X-RAY DIFFRACTION' 4.902 32.337 6 94.000 2597 . 0.176 0.208 . 141 . 2738 . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3E25 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3E25 _struct.title 'Crystal structure of M. tuberculosis glucosyl-3-phosphoglycerate synthase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3E25 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'glucosyltransferase, mycobacterial, GT81 UDP-glucose, 3-phosphoglycerate, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O05309_MYCTU _struct_ref.pdbx_db_accession O05309 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTASELVAGDLAGGRAPGALPLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLD SGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQL VKSFYRRPLQVSDVTSGVCATGGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTF DRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFLPGGPDDSDYTRHTWPVSLVDRPPMKV MRPR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3E25 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 324 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O05309 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 324 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 324 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3E25 LYS A 325 ? UNP O05309 ? ? 'expression tag' 325 1 1 3E25 LEU A 326 ? UNP O05309 ? ? 'expression tag' 326 2 1 3E25 ALA A 327 ? UNP O05309 ? ? 'expression tag' 327 3 1 3E25 ALA A 328 ? UNP O05309 ? ? 'expression tag' 328 4 1 3E25 ALA A 329 ? UNP O05309 ? ? 'expression tag' 329 5 1 3E25 LEU A 330 ? UNP O05309 ? ? 'expression tag' 330 6 1 3E25 GLU A 331 ? UNP O05309 ? ? 'expression tag' 331 7 1 3E25 HIS A 332 ? UNP O05309 ? ? 'expression tag' 332 8 1 3E25 HIS A 333 ? UNP O05309 ? ? 'expression tag' 333 9 1 3E25 HIS A 334 ? UNP O05309 ? ? 'expression tag' 334 10 1 3E25 HIS A 335 ? UNP O05309 ? ? 'expression tag' 335 11 1 3E25 HIS A 336 ? UNP O05309 ? ? 'expression tag' 336 12 1 3E25 HIS A 337 ? UNP O05309 ? ? 'expression tag' 337 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5340 ? 1 MORE -66 ? 1 'SSA (A^2)' 20600 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 32 ? LYS A 40 ? THR A 32 LYS A 40 1 ? 9 HELX_P HELX_P2 2 THR A 57 ? SER A 64 ? THR A 57 SER A 64 1 ? 8 HELX_P HELX_P3 3 ILE A 65 ? VAL A 69 ? ILE A 65 VAL A 69 5 ? 5 HELX_P HELX_P4 4 ASP A 86 ? SER A 94 ? ASP A 86 SER A 94 1 ? 9 HELX_P HELX_P5 5 ARG A 101 ? LEU A 105 ? ARG A 101 LEU A 105 1 ? 5 HELX_P HELX_P6 6 GLY A 113 ? THR A 125 ? GLY A 113 THR A 125 1 ? 13 HELX_P HELX_P7 7 LEU A 143 ? VAL A 149 ? LEU A 143 VAL A 149 1 ? 7 HELX_P HELX_P8 8 VAL A 149 ? GLY A 155 ? VAL A 149 GLY A 155 1 ? 7 HELX_P HELX_P9 9 ARG A 185 ? VAL A 190 ? ARG A 185 VAL A 190 1 ? 6 HELX_P HELX_P10 10 VAL A 190 ? ARG A 199 ? VAL A 190 ARG A 199 1 ? 10 HELX_P HELX_P11 11 PRO A 200 ? GLY A 203 ? PRO A 200 GLY A 203 5 ? 4 HELX_P HELX_P12 12 ARG A 217 ? LEU A 223 ? ARG A 217 LEU A 223 1 ? 7 HELX_P HELX_P13 13 PRO A 227 ? TYR A 229 ? PRO A 227 TYR A 229 5 ? 3 HELX_P HELX_P14 14 GLY A 230 ? GLY A 244 ? GLY A 230 GLY A 244 1 ? 15 HELX_P HELX_P15 15 LEU A 263 ? CYS A 281 ? LEU A 263 CYS A 281 1 ? 19 HELX_P HELX_P16 16 PRO A 317 ? ARG A 322 ? PRO A 317 ARG A 322 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 136 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 136 A MG 338 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C UDP . O1A ? ? A MG 338 A UDP 339 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C UDP . O1B ? ? A MG 338 A UDP 339 1_555 ? ? ? ? ? ? ? 2.179 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O1A ? C UDP . ? A UDP 339 ? 1_555 76.2 ? 2 OD2 ? A ASP 136 ? A ASP 136 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O1B ? C UDP . ? A UDP 339 ? 1_555 151.6 ? 3 O1A ? C UDP . ? A UDP 339 ? 1_555 MG ? B MG . ? A MG 338 ? 1_555 O1B ? C UDP . ? A UDP 339 ? 1_555 100.1 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 303 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 303 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 THR _struct_mon_prot_cis.pdbx_label_seq_id_2 304 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 THR _struct_mon_prot_cis.pdbx_auth_seq_id_2 304 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 25 ? TRP A 26 ? THR A 25 TRP A 26 A 2 ILE A 248 ? ASN A 252 ? ILE A 248 ASN A 252 A 3 LEU A 160 ? PHE A 164 ? LEU A 160 PHE A 164 A 4 TYR A 213 ? SER A 216 ? TYR A 213 SER A 216 A 5 ILE A 129 ? PHE A 132 ? ILE A 129 PHE A 132 A 6 ILE A 45 ? ALA A 51 ? ILE A 45 ALA A 51 A 7 GLU A 75 ? ASP A 80 ? GLU A 75 ASP A 80 A 8 ARG A 97 ? SER A 100 ? ARG A 97 SER A 100 B 1 THR A 291 ? GLN A 292 ? THR A 291 GLN A 292 B 2 HIS A 306 ? THR A 307 ? HIS A 306 THR A 307 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 26 ? N TRP A 26 O GLN A 250 ? O GLN A 250 A 2 3 O ALA A 249 ? O ALA A 249 N LEU A 160 ? N LEU A 160 A 3 4 N VAL A 161 ? N VAL A 161 O ALA A 214 ? O ALA A 214 A 4 5 O TYR A 213 ? O TYR A 213 N PHE A 132 ? N PHE A 132 A 5 6 O VAL A 131 ? O VAL A 131 N VAL A 48 ? N VAL A 48 A 6 7 N VAL A 47 ? N VAL A 47 O ILE A 77 ? O ILE A 77 A 7 8 N VAL A 78 ? N VAL A 78 O VAL A 99 ? O VAL A 99 B 1 2 N GLN A 292 ? N GLN A 292 O HIS A 306 ? O HIS A 306 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 338 ? 3 'BINDING SITE FOR RESIDUE MG A 338' AC2 Software A UDP 339 ? 17 'BINDING SITE FOR RESIDUE UDP A 339' AC3 Software A 3PG 340 ? 4 'BINDING SITE FOR RESIDUE 3PG A 340' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 134 ? ASP A 134 . ? 1_555 ? 2 AC1 3 ASP A 136 ? ASP A 136 . ? 1_555 ? 3 AC1 3 UDP C . ? UDP A 339 . ? 1_555 ? 4 AC2 17 PRO A 50 ? PRO A 50 . ? 1_555 ? 5 AC2 17 ALA A 51 ? ALA A 51 . ? 1_555 ? 6 AC2 17 LEU A 52 ? LEU A 52 . ? 1_555 ? 7 AC2 17 GLU A 54 ? GLU A 54 . ? 1_555 ? 8 AC2 17 SER A 81 ? SER A 81 . ? 1_555 ? 9 AC2 17 GLY A 113 ? GLY A 113 . ? 1_555 ? 10 AC2 17 LYS A 114 ? LYS A 114 . ? 1_555 ? 11 AC2 17 ASP A 134 ? ASP A 134 . ? 1_555 ? 12 AC2 17 SER A 135 ? SER A 135 . ? 1_555 ? 13 AC2 17 ASP A 136 ? ASP A 136 . ? 1_555 ? 14 AC2 17 TYR A 229 ? TYR A 229 . ? 1_555 ? 15 AC2 17 ARG A 261 ? ARG A 261 . ? 1_555 ? 16 AC2 17 MET A 269 ? MET A 269 . ? 1_555 ? 17 AC2 17 MG B . ? MG A 338 . ? 1_555 ? 18 AC2 17 3PG D . ? 3PG A 340 . ? 1_555 ? 19 AC2 17 HOH E . ? HOH A 345 . ? 1_555 ? 20 AC2 17 HOH E . ? HOH A 371 . ? 1_555 ? 21 AC3 4 ARG A 185 ? ARG A 185 . ? 1_555 ? 22 AC3 4 VAL A 186 ? VAL A 186 . ? 1_555 ? 23 AC3 4 THR A 187 ? THR A 187 . ? 1_555 ? 24 AC3 4 UDP C . ? UDP A 339 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 66 ? ? -26.43 -61.79 2 1 ASP A 70 ? ? 88.04 -4.50 3 1 SER A 81 ? ? -91.06 50.12 4 1 ASP A 85 ? ? -95.78 -148.69 5 1 LEU A 105 ? ? -160.83 83.65 6 1 SER A 126 ? ? -150.42 10.45 7 1 ASN A 139 ? ? 43.44 71.87 8 1 TYR A 165 ? ? -173.36 146.91 9 1 VAL A 190 ? ? -112.96 -86.19 10 1 ARG A 199 ? ? -150.27 65.75 11 1 LEU A 245 ? ? -55.68 -7.87 12 1 GLU A 265 ? ? -69.05 -156.72 13 1 LEU A 266 ? ? 66.71 -63.60 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 1 Y 1 A VAL 7 ? A VAL 7 8 1 Y 1 A ALA 8 ? A ALA 8 9 1 Y 1 A GLY 9 ? A GLY 9 10 1 Y 1 A ASP 10 ? A ASP 10 11 1 Y 1 A LEU 11 ? A LEU 11 12 1 Y 1 A ALA 12 ? A ALA 12 13 1 Y 1 A GLY 13 ? A GLY 13 14 1 Y 1 A GLY 14 ? A GLY 14 15 1 Y 1 A ARG 15 ? A ARG 15 16 1 Y 1 A ALA 16 ? A ALA 16 17 1 Y 1 A PRO 17 ? A PRO 17 18 1 Y 1 A GLY 18 ? A GLY 18 19 1 Y 1 A ALA 19 ? A ALA 19 20 1 Y 1 A LEU 20 ? A LEU 20 21 1 Y 1 A PRO 21 ? A PRO 21 22 1 Y 1 A LEU 22 ? A LEU 22 23 1 Y 1 A ASP 23 ? A ASP 23 24 1 Y 1 A ARG 167 ? A ARG 167 25 1 Y 1 A PRO 168 ? A PRO 168 26 1 Y 1 A LEU 169 ? A LEU 169 27 1 Y 1 A GLN 170 ? A GLN 170 28 1 Y 1 A VAL 171 ? A VAL 171 29 1 Y 1 A SER 172 ? A SER 172 30 1 Y 1 A ASP 173 ? A ASP 173 31 1 Y 1 A VAL 174 ? A VAL 174 32 1 Y 1 A THR 175 ? A THR 175 33 1 Y 1 A SER 176 ? A SER 176 34 1 Y 1 A GLY 177 ? A GLY 177 35 1 Y 1 A VAL 178 ? A VAL 178 36 1 Y 1 A CYS 179 ? A CYS 179 37 1 Y 1 A ALA 180 ? A ALA 180 38 1 Y 1 A THR 181 ? A THR 181 39 1 Y 1 A GLY 182 ? A GLY 182 40 1 Y 1 A GLY 183 ? A GLY 183 41 1 Y 1 A GLY 184 ? A GLY 184 42 1 Y 1 A ALA 257 ? A ALA 257 43 1 Y 1 A HIS 258 ? A HIS 258 44 1 Y 1 A ARG 259 ? A ARG 259 45 1 Y 1 A LEU 294 ? A LEU 294 46 1 Y 1 A PRO 295 ? A PRO 295 47 1 Y 1 A GLY 296 ? A GLY 296 48 1 Y 1 A GLY 297 ? A GLY 297 49 1 Y 1 A PRO 298 ? A PRO 298 50 1 Y 1 A ASP 299 ? A ASP 299 51 1 Y 1 A ASP 300 ? A ASP 300 52 1 Y 1 A SER 301 ? A SER 301 53 1 Y 1 A ASP 302 ? A ASP 302 54 1 Y 1 A ARG 324 ? A ARG 324 55 1 Y 1 A LYS 325 ? A LYS 325 56 1 Y 1 A LEU 326 ? A LEU 326 57 1 Y 1 A ALA 327 ? A ALA 327 58 1 Y 1 A ALA 328 ? A ALA 328 59 1 Y 1 A ALA 329 ? A ALA 329 60 1 Y 1 A LEU 330 ? A LEU 330 61 1 Y 1 A GLU 331 ? A GLU 331 62 1 Y 1 A HIS 332 ? A HIS 332 63 1 Y 1 A HIS 333 ? A HIS 333 64 1 Y 1 A HIS 334 ? A HIS 334 65 1 Y 1 A HIS 335 ? A HIS 335 66 1 Y 1 A HIS 336 ? A HIS 336 67 1 Y 1 A HIS 337 ? A HIS 337 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3PG C1 C N N 1 3PG O1 O N N 2 3PG O2 O N N 3 3PG C2 C N R 4 3PG O3 O N N 5 3PG C3 C N N 6 3PG O1P O N N 7 3PG P P N N 8 3PG O2P O N N 9 3PG O3P O N N 10 3PG O4P O N N 11 3PG HO2 H N N 12 3PG H2 H N N 13 3PG HO3 H N N 14 3PG H31 H N N 15 3PG H32 H N N 16 3PG HOP3 H N N 17 3PG HOP4 H N N 18 ALA N N N N 19 ALA CA C N S 20 ALA C C N N 21 ALA O O N N 22 ALA CB C N N 23 ALA OXT O N N 24 ALA H H N N 25 ALA H2 H N N 26 ALA HA H N N 27 ALA HB1 H N N 28 ALA HB2 H N N 29 ALA HB3 H N N 30 ALA HXT H N N 31 ARG N N N N 32 ARG CA C N S 33 ARG C C N N 34 ARG O O N N 35 ARG CB C N N 36 ARG CG C N N 37 ARG CD C N N 38 ARG NE N N N 39 ARG CZ C N N 40 ARG NH1 N N N 41 ARG NH2 N N N 42 ARG OXT O N N 43 ARG H H N N 44 ARG H2 H N N 45 ARG HA H N N 46 ARG HB2 H N N 47 ARG HB3 H N N 48 ARG HG2 H N N 49 ARG HG3 H N N 50 ARG HD2 H N N 51 ARG HD3 H N N 52 ARG HE H N N 53 ARG HH11 H N N 54 ARG HH12 H N N 55 ARG HH21 H N N 56 ARG HH22 H N N 57 ARG HXT H N N 58 ASN N N N N 59 ASN CA C N S 60 ASN C C N N 61 ASN O O N N 62 ASN CB C N N 63 ASN CG C N N 64 ASN OD1 O N N 65 ASN ND2 N N N 66 ASN OXT O N N 67 ASN H H N N 68 ASN H2 H N N 69 ASN HA H N N 70 ASN HB2 H N N 71 ASN HB3 H N N 72 ASN HD21 H N N 73 ASN HD22 H N N 74 ASN HXT H N N 75 ASP N N N N 76 ASP CA C N S 77 ASP C C N N 78 ASP O O N N 79 ASP CB C N N 80 ASP CG C N N 81 ASP OD1 O N N 82 ASP OD2 O N N 83 ASP OXT O N N 84 ASP H H N N 85 ASP H2 H N N 86 ASP HA H N N 87 ASP HB2 H N N 88 ASP HB3 H N N 89 ASP HD2 H N N 90 ASP HXT H N N 91 CYS N N N N 92 CYS CA C N R 93 CYS C C N N 94 CYS O O N N 95 CYS CB C N N 96 CYS SG S N N 97 CYS OXT O N N 98 CYS H H N N 99 CYS H2 H N N 100 CYS HA H N N 101 CYS HB2 H N N 102 CYS HB3 H N N 103 CYS HG H N N 104 CYS HXT H N N 105 GLN N N N N 106 GLN CA C N S 107 GLN C C N N 108 GLN O O N N 109 GLN CB C N N 110 GLN CG C N N 111 GLN CD C N N 112 GLN OE1 O N N 113 GLN NE2 N N N 114 GLN OXT O N N 115 GLN H H N N 116 GLN H2 H N N 117 GLN HA H N N 118 GLN HB2 H N N 119 GLN HB3 H N N 120 GLN HG2 H N N 121 GLN HG3 H N N 122 GLN HE21 H N N 123 GLN HE22 H N N 124 GLN HXT H N N 125 GLU N N N N 126 GLU CA C N S 127 GLU C C N N 128 GLU O O N N 129 GLU CB C N N 130 GLU CG C N N 131 GLU CD C N N 132 GLU OE1 O N N 133 GLU OE2 O N N 134 GLU OXT O N N 135 GLU H H N N 136 GLU H2 H N N 137 GLU HA H N N 138 GLU HB2 H N N 139 GLU HB3 H N N 140 GLU HG2 H N N 141 GLU HG3 H N N 142 GLU HE2 H N N 143 GLU HXT H N N 144 GLY N N N N 145 GLY CA C N N 146 GLY C C N N 147 GLY O O N N 148 GLY OXT O N N 149 GLY H H N N 150 GLY H2 H N N 151 GLY HA2 H N N 152 GLY HA3 H N N 153 GLY HXT H N N 154 HIS N N N N 155 HIS CA C N S 156 HIS C C N N 157 HIS O O N N 158 HIS CB C N N 159 HIS CG C Y N 160 HIS ND1 N Y N 161 HIS CD2 C Y N 162 HIS CE1 C Y N 163 HIS NE2 N Y N 164 HIS OXT O N N 165 HIS H H N N 166 HIS H2 H N N 167 HIS HA H N N 168 HIS HB2 H N N 169 HIS HB3 H N N 170 HIS HD1 H N N 171 HIS HD2 H N N 172 HIS HE1 H N N 173 HIS HE2 H N N 174 HIS HXT H N N 175 HOH O O N N 176 HOH H1 H N N 177 HOH H2 H N N 178 ILE N N N N 179 ILE CA C N S 180 ILE C C N N 181 ILE O O N N 182 ILE CB C N S 183 ILE CG1 C N N 184 ILE CG2 C N N 185 ILE CD1 C N N 186 ILE OXT O N N 187 ILE H H N N 188 ILE H2 H N N 189 ILE HA H N N 190 ILE HB H N N 191 ILE HG12 H N N 192 ILE HG13 H N N 193 ILE HG21 H N N 194 ILE HG22 H N N 195 ILE HG23 H N N 196 ILE HD11 H N N 197 ILE HD12 H N N 198 ILE HD13 H N N 199 ILE HXT H N N 200 LEU N N N N 201 LEU CA C N S 202 LEU C C N N 203 LEU O O N N 204 LEU CB C N N 205 LEU CG C N N 206 LEU CD1 C N N 207 LEU CD2 C N N 208 LEU OXT O N N 209 LEU H H N N 210 LEU H2 H N N 211 LEU HA H N N 212 LEU HB2 H N N 213 LEU HB3 H N N 214 LEU HG H N N 215 LEU HD11 H N N 216 LEU HD12 H N N 217 LEU HD13 H N N 218 LEU HD21 H N N 219 LEU HD22 H N N 220 LEU HD23 H N N 221 LEU HXT H N N 222 LYS N N N N 223 LYS CA C N S 224 LYS C C N N 225 LYS O O N N 226 LYS CB C N N 227 LYS CG C N N 228 LYS CD C N N 229 LYS CE C N N 230 LYS NZ N N N 231 LYS OXT O N N 232 LYS H H N N 233 LYS H2 H N N 234 LYS HA H N N 235 LYS HB2 H N N 236 LYS HB3 H N N 237 LYS HG2 H N N 238 LYS HG3 H N N 239 LYS HD2 H N N 240 LYS HD3 H N N 241 LYS HE2 H N N 242 LYS HE3 H N N 243 LYS HZ1 H N N 244 LYS HZ2 H N N 245 LYS HZ3 H N N 246 LYS HXT H N N 247 MET N N N N 248 MET CA C N S 249 MET C C N N 250 MET O O N N 251 MET CB C N N 252 MET CG C N N 253 MET SD S N N 254 MET CE C N N 255 MET OXT O N N 256 MET H H N N 257 MET H2 H N N 258 MET HA H N N 259 MET HB2 H N N 260 MET HB3 H N N 261 MET HG2 H N N 262 MET HG3 H N N 263 MET HE1 H N N 264 MET HE2 H N N 265 MET HE3 H N N 266 MET HXT H N N 267 MG MG MG N N 268 PHE N N N N 269 PHE CA C N S 270 PHE C C N N 271 PHE O O N N 272 PHE CB C N N 273 PHE CG C Y N 274 PHE CD1 C Y N 275 PHE CD2 C Y N 276 PHE CE1 C Y N 277 PHE CE2 C Y N 278 PHE CZ C Y N 279 PHE OXT O N N 280 PHE H H N N 281 PHE H2 H N N 282 PHE HA H N N 283 PHE HB2 H N N 284 PHE HB3 H N N 285 PHE HD1 H N N 286 PHE HD2 H N N 287 PHE HE1 H N N 288 PHE HE2 H N N 289 PHE HZ H N N 290 PHE HXT H N N 291 PRO N N N N 292 PRO CA C N S 293 PRO C C N N 294 PRO O O N N 295 PRO CB C N N 296 PRO CG C N N 297 PRO CD C N N 298 PRO OXT O N N 299 PRO H H N N 300 PRO HA H N N 301 PRO HB2 H N N 302 PRO HB3 H N N 303 PRO HG2 H N N 304 PRO HG3 H N N 305 PRO HD2 H N N 306 PRO HD3 H N N 307 PRO HXT H N N 308 SER N N N N 309 SER CA C N S 310 SER C C N N 311 SER O O N N 312 SER CB C N N 313 SER OG O N N 314 SER OXT O N N 315 SER H H N N 316 SER H2 H N N 317 SER HA H N N 318 SER HB2 H N N 319 SER HB3 H N N 320 SER HG H N N 321 SER HXT H N N 322 THR N N N N 323 THR CA C N S 324 THR C C N N 325 THR O O N N 326 THR CB C N R 327 THR OG1 O N N 328 THR CG2 C N N 329 THR OXT O N N 330 THR H H N N 331 THR H2 H N N 332 THR HA H N N 333 THR HB H N N 334 THR HG1 H N N 335 THR HG21 H N N 336 THR HG22 H N N 337 THR HG23 H N N 338 THR HXT H N N 339 TRP N N N N 340 TRP CA C N S 341 TRP C C N N 342 TRP O O N N 343 TRP CB C N N 344 TRP CG C Y N 345 TRP CD1 C Y N 346 TRP CD2 C Y N 347 TRP NE1 N Y N 348 TRP CE2 C Y N 349 TRP CE3 C Y N 350 TRP CZ2 C Y N 351 TRP CZ3 C Y N 352 TRP CH2 C Y N 353 TRP OXT O N N 354 TRP H H N N 355 TRP H2 H N N 356 TRP HA H N N 357 TRP HB2 H N N 358 TRP HB3 H N N 359 TRP HD1 H N N 360 TRP HE1 H N N 361 TRP HE3 H N N 362 TRP HZ2 H N N 363 TRP HZ3 H N N 364 TRP HH2 H N N 365 TRP HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 UDP N1 N N N 391 UDP C2 C N N 392 UDP N3 N N N 393 UDP C4 C N N 394 UDP C5 C N N 395 UDP C6 C N N 396 UDP O2 O N N 397 UDP O4 O N N 398 UDP "C1'" C N R 399 UDP "C2'" C N R 400 UDP "O2'" O N N 401 UDP "C3'" C N S 402 UDP "C4'" C N R 403 UDP "O4'" O N N 404 UDP "O3'" O N N 405 UDP "C5'" C N N 406 UDP "O5'" O N N 407 UDP PA P N N 408 UDP O1A O N N 409 UDP O2A O N N 410 UDP O3A O N N 411 UDP PB P N N 412 UDP O1B O N N 413 UDP O2B O N N 414 UDP O3B O N N 415 UDP HN3 H N N 416 UDP H5 H N N 417 UDP H6 H N N 418 UDP "H1'" H N N 419 UDP "H2'" H N N 420 UDP "HO2'" H N N 421 UDP "H3'" H N N 422 UDP "H4'" H N N 423 UDP "HO3'" H N N 424 UDP "H5'1" H N N 425 UDP "H5'2" H N N 426 UDP HOA2 H N N 427 UDP HOB2 H N N 428 UDP HOB3 H N N 429 VAL N N N N 430 VAL CA C N S 431 VAL C C N N 432 VAL O O N N 433 VAL CB C N N 434 VAL CG1 C N N 435 VAL CG2 C N N 436 VAL OXT O N N 437 VAL H H N N 438 VAL H2 H N N 439 VAL HA H N N 440 VAL HB H N N 441 VAL HG11 H N N 442 VAL HG12 H N N 443 VAL HG13 H N N 444 VAL HG21 H N N 445 VAL HG22 H N N 446 VAL HG23 H N N 447 VAL HXT H N N 448 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3PG C1 O1 doub N N 1 3PG C1 O2 sing N N 2 3PG C1 C2 sing N N 3 3PG O2 HO2 sing N N 4 3PG C2 O3 sing N N 5 3PG C2 C3 sing N N 6 3PG C2 H2 sing N N 7 3PG O3 HO3 sing N N 8 3PG C3 O1P sing N N 9 3PG C3 H31 sing N N 10 3PG C3 H32 sing N N 11 3PG O1P P sing N N 12 3PG P O2P doub N N 13 3PG P O3P sing N N 14 3PG P O4P sing N N 15 3PG O3P HOP3 sing N N 16 3PG O4P HOP4 sing N N 17 ALA N CA sing N N 18 ALA N H sing N N 19 ALA N H2 sing N N 20 ALA CA C sing N N 21 ALA CA CB sing N N 22 ALA CA HA sing N N 23 ALA C O doub N N 24 ALA C OXT sing N N 25 ALA CB HB1 sing N N 26 ALA CB HB2 sing N N 27 ALA CB HB3 sing N N 28 ALA OXT HXT sing N N 29 ARG N CA sing N N 30 ARG N H sing N N 31 ARG N H2 sing N N 32 ARG CA C sing N N 33 ARG CA CB sing N N 34 ARG CA HA sing N N 35 ARG C O doub N N 36 ARG C OXT sing N N 37 ARG CB CG sing N N 38 ARG CB HB2 sing N N 39 ARG CB HB3 sing N N 40 ARG CG CD sing N N 41 ARG CG HG2 sing N N 42 ARG CG HG3 sing N N 43 ARG CD NE sing N N 44 ARG CD HD2 sing N N 45 ARG CD HD3 sing N N 46 ARG NE CZ sing N N 47 ARG NE HE sing N N 48 ARG CZ NH1 sing N N 49 ARG CZ NH2 doub N N 50 ARG NH1 HH11 sing N N 51 ARG NH1 HH12 sing N N 52 ARG NH2 HH21 sing N N 53 ARG NH2 HH22 sing N N 54 ARG OXT HXT sing N N 55 ASN N CA sing N N 56 ASN N H sing N N 57 ASN N H2 sing N N 58 ASN CA C sing N N 59 ASN CA CB sing N N 60 ASN CA HA sing N N 61 ASN C O doub N N 62 ASN C OXT sing N N 63 ASN CB CG sing N N 64 ASN CB HB2 sing N N 65 ASN CB HB3 sing N N 66 ASN CG OD1 doub N N 67 ASN CG ND2 sing N N 68 ASN ND2 HD21 sing N N 69 ASN ND2 HD22 sing N N 70 ASN OXT HXT sing N N 71 ASP N CA sing N N 72 ASP N H sing N N 73 ASP N H2 sing N N 74 ASP CA C sing N N 75 ASP CA CB sing N N 76 ASP CA HA sing N N 77 ASP C O doub N N 78 ASP C OXT sing N N 79 ASP CB CG sing N N 80 ASP CB HB2 sing N N 81 ASP CB HB3 sing N N 82 ASP CG OD1 doub N N 83 ASP CG OD2 sing N N 84 ASP OD2 HD2 sing N N 85 ASP OXT HXT sing N N 86 CYS N CA sing N N 87 CYS N H sing N N 88 CYS N H2 sing N N 89 CYS CA C sing N N 90 CYS CA CB sing N N 91 CYS CA HA sing N N 92 CYS C O doub N N 93 CYS C OXT sing N N 94 CYS CB SG sing N N 95 CYS CB HB2 sing N N 96 CYS CB HB3 sing N N 97 CYS SG HG sing N N 98 CYS OXT HXT sing N N 99 GLN N CA sing N N 100 GLN N H sing N N 101 GLN N H2 sing N N 102 GLN CA C sing N N 103 GLN CA CB sing N N 104 GLN CA HA sing N N 105 GLN C O doub N N 106 GLN C OXT sing N N 107 GLN CB CG sing N N 108 GLN CB HB2 sing N N 109 GLN CB HB3 sing N N 110 GLN CG CD sing N N 111 GLN CG HG2 sing N N 112 GLN CG HG3 sing N N 113 GLN CD OE1 doub N N 114 GLN CD NE2 sing N N 115 GLN NE2 HE21 sing N N 116 GLN NE2 HE22 sing N N 117 GLN OXT HXT sing N N 118 GLU N CA sing N N 119 GLU N H sing N N 120 GLU N H2 sing N N 121 GLU CA C sing N N 122 GLU CA CB sing N N 123 GLU CA HA sing N N 124 GLU C O doub N N 125 GLU C OXT sing N N 126 GLU CB CG sing N N 127 GLU CB HB2 sing N N 128 GLU CB HB3 sing N N 129 GLU CG CD sing N N 130 GLU CG HG2 sing N N 131 GLU CG HG3 sing N N 132 GLU CD OE1 doub N N 133 GLU CD OE2 sing N N 134 GLU OE2 HE2 sing N N 135 GLU OXT HXT sing N N 136 GLY N CA sing N N 137 GLY N H sing N N 138 GLY N H2 sing N N 139 GLY CA C sing N N 140 GLY CA HA2 sing N N 141 GLY CA HA3 sing N N 142 GLY C O doub N N 143 GLY C OXT sing N N 144 GLY OXT HXT sing N N 145 HIS N CA sing N N 146 HIS N H sing N N 147 HIS N H2 sing N N 148 HIS CA C sing N N 149 HIS CA CB sing N N 150 HIS CA HA sing N N 151 HIS C O doub N N 152 HIS C OXT sing N N 153 HIS CB CG sing N N 154 HIS CB HB2 sing N N 155 HIS CB HB3 sing N N 156 HIS CG ND1 sing Y N 157 HIS CG CD2 doub Y N 158 HIS ND1 CE1 doub Y N 159 HIS ND1 HD1 sing N N 160 HIS CD2 NE2 sing Y N 161 HIS CD2 HD2 sing N N 162 HIS CE1 NE2 sing Y N 163 HIS CE1 HE1 sing N N 164 HIS NE2 HE2 sing N N 165 HIS OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 ILE N CA sing N N 169 ILE N H sing N N 170 ILE N H2 sing N N 171 ILE CA C sing N N 172 ILE CA CB sing N N 173 ILE CA HA sing N N 174 ILE C O doub N N 175 ILE C OXT sing N N 176 ILE CB CG1 sing N N 177 ILE CB CG2 sing N N 178 ILE CB HB sing N N 179 ILE CG1 CD1 sing N N 180 ILE CG1 HG12 sing N N 181 ILE CG1 HG13 sing N N 182 ILE CG2 HG21 sing N N 183 ILE CG2 HG22 sing N N 184 ILE CG2 HG23 sing N N 185 ILE CD1 HD11 sing N N 186 ILE CD1 HD12 sing N N 187 ILE CD1 HD13 sing N N 188 ILE OXT HXT sing N N 189 LEU N CA sing N N 190 LEU N H sing N N 191 LEU N H2 sing N N 192 LEU CA C sing N N 193 LEU CA CB sing N N 194 LEU CA HA sing N N 195 LEU C O doub N N 196 LEU C OXT sing N N 197 LEU CB CG sing N N 198 LEU CB HB2 sing N N 199 LEU CB HB3 sing N N 200 LEU CG CD1 sing N N 201 LEU CG CD2 sing N N 202 LEU CG HG sing N N 203 LEU CD1 HD11 sing N N 204 LEU CD1 HD12 sing N N 205 LEU CD1 HD13 sing N N 206 LEU CD2 HD21 sing N N 207 LEU CD2 HD22 sing N N 208 LEU CD2 HD23 sing N N 209 LEU OXT HXT sing N N 210 LYS N CA sing N N 211 LYS N H sing N N 212 LYS N H2 sing N N 213 LYS CA C sing N N 214 LYS CA CB sing N N 215 LYS CA HA sing N N 216 LYS C O doub N N 217 LYS C OXT sing N N 218 LYS CB CG sing N N 219 LYS CB HB2 sing N N 220 LYS CB HB3 sing N N 221 LYS CG CD sing N N 222 LYS CG HG2 sing N N 223 LYS CG HG3 sing N N 224 LYS CD CE sing N N 225 LYS CD HD2 sing N N 226 LYS CD HD3 sing N N 227 LYS CE NZ sing N N 228 LYS CE HE2 sing N N 229 LYS CE HE3 sing N N 230 LYS NZ HZ1 sing N N 231 LYS NZ HZ2 sing N N 232 LYS NZ HZ3 sing N N 233 LYS OXT HXT sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 PHE N CA sing N N 254 PHE N H sing N N 255 PHE N H2 sing N N 256 PHE CA C sing N N 257 PHE CA CB sing N N 258 PHE CA HA sing N N 259 PHE C O doub N N 260 PHE C OXT sing N N 261 PHE CB CG sing N N 262 PHE CB HB2 sing N N 263 PHE CB HB3 sing N N 264 PHE CG CD1 doub Y N 265 PHE CG CD2 sing Y N 266 PHE CD1 CE1 sing Y N 267 PHE CD1 HD1 sing N N 268 PHE CD2 CE2 doub Y N 269 PHE CD2 HD2 sing N N 270 PHE CE1 CZ doub Y N 271 PHE CE1 HE1 sing N N 272 PHE CE2 CZ sing Y N 273 PHE CE2 HE2 sing N N 274 PHE CZ HZ sing N N 275 PHE OXT HXT sing N N 276 PRO N CA sing N N 277 PRO N CD sing N N 278 PRO N H sing N N 279 PRO CA C sing N N 280 PRO CA CB sing N N 281 PRO CA HA sing N N 282 PRO C O doub N N 283 PRO C OXT sing N N 284 PRO CB CG sing N N 285 PRO CB HB2 sing N N 286 PRO CB HB3 sing N N 287 PRO CG CD sing N N 288 PRO CG HG2 sing N N 289 PRO CG HG3 sing N N 290 PRO CD HD2 sing N N 291 PRO CD HD3 sing N N 292 PRO OXT HXT sing N N 293 SER N CA sing N N 294 SER N H sing N N 295 SER N H2 sing N N 296 SER CA C sing N N 297 SER CA CB sing N N 298 SER CA HA sing N N 299 SER C O doub N N 300 SER C OXT sing N N 301 SER CB OG sing N N 302 SER CB HB2 sing N N 303 SER CB HB3 sing N N 304 SER OG HG sing N N 305 SER OXT HXT sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 UDP N1 C2 sing N N 375 UDP N1 C6 sing N N 376 UDP N1 "C1'" sing N N 377 UDP C2 N3 sing N N 378 UDP C2 O2 doub N N 379 UDP N3 C4 sing N N 380 UDP N3 HN3 sing N N 381 UDP C4 C5 sing N N 382 UDP C4 O4 doub N N 383 UDP C5 C6 doub N N 384 UDP C5 H5 sing N N 385 UDP C6 H6 sing N N 386 UDP "C1'" "C2'" sing N N 387 UDP "C1'" "O4'" sing N N 388 UDP "C1'" "H1'" sing N N 389 UDP "C2'" "O2'" sing N N 390 UDP "C2'" "C3'" sing N N 391 UDP "C2'" "H2'" sing N N 392 UDP "O2'" "HO2'" sing N N 393 UDP "C3'" "C4'" sing N N 394 UDP "C3'" "O3'" sing N N 395 UDP "C3'" "H3'" sing N N 396 UDP "C4'" "O4'" sing N N 397 UDP "C4'" "C5'" sing N N 398 UDP "C4'" "H4'" sing N N 399 UDP "O3'" "HO3'" sing N N 400 UDP "C5'" "O5'" sing N N 401 UDP "C5'" "H5'1" sing N N 402 UDP "C5'" "H5'2" sing N N 403 UDP "O5'" PA sing N N 404 UDP PA O1A doub N N 405 UDP PA O2A sing N N 406 UDP PA O3A sing N N 407 UDP O2A HOA2 sing N N 408 UDP O3A PB sing N N 409 UDP PB O1B doub N N 410 UDP PB O2B sing N N 411 UDP PB O3B sing N N 412 UDP O2B HOB2 sing N N 413 UDP O3B HOB3 sing N N 414 VAL N CA sing N N 415 VAL N H sing N N 416 VAL N H2 sing N N 417 VAL CA C sing N N 418 VAL CA CB sing N N 419 VAL CA HA sing N N 420 VAL C O doub N N 421 VAL C OXT sing N N 422 VAL CB CG1 sing N N 423 VAL CB CG2 sing N N 424 VAL CB HB sing N N 425 VAL CG1 HG11 sing N N 426 VAL CG1 HG12 sing N N 427 VAL CG1 HG13 sing N N 428 VAL CG2 HG21 sing N N 429 VAL CG2 HG22 sing N N 430 VAL CG2 HG23 sing N N 431 VAL OXT HXT sing N N 432 # _pdbx_initial_refinement_model.accession_code 3F1Y _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'Rubrobacter xylanophilus mannosyl-3-phosphoglycerate synthase (Sa-Moura et al., Acta Cryst. (2008). F64, 760-763)' # _atom_sites.entry_id 3E25 _atom_sites.fract_transf_matrix[1][1] 0.009969 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009969 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007872 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_