HEADER TRANSFERASE 05-AUG-08 3E27 TITLE NICOTINIC ACID MONONUCLEOTIDE (NAMN) ADENYLYLTRANSFERASE FROM BACILLUS TITLE 2 ANTHRACIS: PRODUCT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE (NICOTINAMIDE) NUCLEOTIDE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.7.7.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 STRAIN: B. ANTHRACIS AMES; SOURCE 5 GENE: NADD, BT9727_4068; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: E. COLI BL21/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: A PET DERIVED VECTOR KEYWDS ROSSMAN-LIKE FOLD, NUCLEOTIDE-BINDING MOTIF, NUCLEOTIDYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.MARTYNOWSKI,Y.EYOBO,H.ZHANG REVDAT 4 30-AUG-23 3E27 1 REMARK LINK REVDAT 3 11-JUN-14 3E27 1 JRNL VERSN REVDAT 2 24-FEB-09 3E27 1 VERSN REVDAT 1 09-SEP-08 3E27 0 JRNL AUTH L.SORCI,Y.PAN,Y.EYOBO,I.RODIONOVA,N.HUANG,O.KURNASOV, JRNL AUTH 2 S.ZHONG,A.D.MACKERELL,H.ZHANG,A.L.OSTERMAN JRNL TITL TARGETING NAD BIOSYNTHESIS IN BACTERIAL PATHOGENS: JRNL TITL 2 STRUCTURE-BASED DEVELOPMENT OF INHIBITORS OF NICOTINATE JRNL TITL 3 MONONUCLEOTIDE ADENYLYLTRANSFERASE NADD. JRNL REF CHEM.BIOL. V. 16 849 2009 JRNL REFN ISSN 1074-5521 JRNL PMID 19716475 JRNL DOI 10.1016/J.CHEMBIOL.2009.07.006 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : -1.95000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6556 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8933 ; 1.561 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 748 ; 5.988 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;39.763 ;23.649 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1121 ;19.848 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;22.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 976 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4898 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3143 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4396 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 439 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3908 ; 0.861 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6158 ; 1.465 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3073 ; 1.948 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2775 ; 2.945 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43353 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KAM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.92800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.98600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.70650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.98600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.92800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.70650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER B 189 REMARK 465 MET D 1 REMARK 465 SER D 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 56 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 48 -95.10 40.67 REMARK 500 ASP A 49 30.77 -177.10 REMARK 500 ARG A 79 151.20 61.22 REMARK 500 LYS A 80 -157.65 50.86 REMARK 500 TYR A 96 76.60 -118.26 REMARK 500 ALA A 153 20.23 -78.65 REMARK 500 TYR A 187 -4.39 63.18 REMARK 500 ARG B 48 -133.12 174.07 REMARK 500 ASP B 49 -76.47 -143.69 REMARK 500 ILE B 50 145.25 67.40 REMARK 500 SER B 52 150.72 -49.81 REMARK 500 ARG C 2 -63.71 -156.34 REMARK 500 ARG D 139 112.19 -36.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 190 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 108 OD1 REMARK 620 2 DND B 191 O12 118.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 190 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 108 OD1 REMARK 620 2 DND C 191 O12 114.0 REMARK 620 3 HOH C 256 O 102.2 134.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 190 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 108 OD1 REMARK 620 2 DND D 191 O12 114.1 REMARK 620 3 HOH D 297 O 99.1 134.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND B 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND C 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND D 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 190 DBREF 3E27 A 1 189 PDB 3E27 3E27 1 189 DBREF 3E27 B 1 189 PDB 3E27 3E27 1 189 DBREF 3E27 C 1 189 PDB 3E27 3E27 1 189 DBREF 3E27 D 1 189 PDB 3E27 3E27 1 189 SEQRES 1 A 189 MET ARG LYS ILE GLY ILE ILE GLY GLY THR PHE ASP PRO SEQRES 2 A 189 PRO HIS TYR GLY HIS LEU LEU ILE ALA ASN GLU VAL TYR SEQRES 3 A 189 HIS ALA LEU ASN LEU GLU GLU VAL TRP PHE LEU PRO ASN SEQRES 4 A 189 GLN ILE PRO PRO HIS LYS GLN GLY ARG ASP ILE THR SER SEQRES 5 A 189 VAL GLU SER ARG LEU GLN MET LEU GLU LEU ALA THR GLU SEQRES 6 A 189 ALA GLU GLU HIS PHE SER ILE CYS LEU GLU GLU LEU SER SEQRES 7 A 189 ARG LYS GLY PRO SER TYR THR TYR ASP THR MET LEU GLN SEQRES 8 A 189 LEU THR LYS LYS TYR PRO ASP VAL GLN PHE HIS PHE ILE SEQRES 9 A 189 ILE GLY GLY ASP MET VAL GLU TYR LEU PRO LYS TRP TYR SEQRES 10 A 189 ASN ILE GLU ALA LEU LEU ASP LEU VAL THR PHE VAL GLY SEQRES 11 A 189 VAL ALA ARG PRO GLY TYR LYS LEU ARG THR PRO TYR PRO SEQRES 12 A 189 ILE THR THR VAL GLU ILE PRO GLU PHE ALA VAL SER SER SEQRES 13 A 189 SER LEU LEU ARG GLU ARG TYR LYS GLU LYS LYS THR CYS SEQRES 14 A 189 LYS TYR LEU LEU PRO GLU LYS VAL GLN VAL TYR ILE GLU SEQRES 15 A 189 ARG ASN GLY LEU TYR GLU SER SEQRES 1 B 189 MET ARG LYS ILE GLY ILE ILE GLY GLY THR PHE ASP PRO SEQRES 2 B 189 PRO HIS TYR GLY HIS LEU LEU ILE ALA ASN GLU VAL TYR SEQRES 3 B 189 HIS ALA LEU ASN LEU GLU GLU VAL TRP PHE LEU PRO ASN SEQRES 4 B 189 GLN ILE PRO PRO HIS LYS GLN GLY ARG ASP ILE THR SER SEQRES 5 B 189 VAL GLU SER ARG LEU GLN MET LEU GLU LEU ALA THR GLU SEQRES 6 B 189 ALA GLU GLU HIS PHE SER ILE CYS LEU GLU GLU LEU SER SEQRES 7 B 189 ARG LYS GLY PRO SER TYR THR TYR ASP THR MET LEU GLN SEQRES 8 B 189 LEU THR LYS LYS TYR PRO ASP VAL GLN PHE HIS PHE ILE SEQRES 9 B 189 ILE GLY GLY ASP MET VAL GLU TYR LEU PRO LYS TRP TYR SEQRES 10 B 189 ASN ILE GLU ALA LEU LEU ASP LEU VAL THR PHE VAL GLY SEQRES 11 B 189 VAL ALA ARG PRO GLY TYR LYS LEU ARG THR PRO TYR PRO SEQRES 12 B 189 ILE THR THR VAL GLU ILE PRO GLU PHE ALA VAL SER SER SEQRES 13 B 189 SER LEU LEU ARG GLU ARG TYR LYS GLU LYS LYS THR CYS SEQRES 14 B 189 LYS TYR LEU LEU PRO GLU LYS VAL GLN VAL TYR ILE GLU SEQRES 15 B 189 ARG ASN GLY LEU TYR GLU SER SEQRES 1 C 189 MET ARG LYS ILE GLY ILE ILE GLY GLY THR PHE ASP PRO SEQRES 2 C 189 PRO HIS TYR GLY HIS LEU LEU ILE ALA ASN GLU VAL TYR SEQRES 3 C 189 HIS ALA LEU ASN LEU GLU GLU VAL TRP PHE LEU PRO ASN SEQRES 4 C 189 GLN ILE PRO PRO HIS LYS GLN GLY ARG ASP ILE THR SER SEQRES 5 C 189 VAL GLU SER ARG LEU GLN MET LEU GLU LEU ALA THR GLU SEQRES 6 C 189 ALA GLU GLU HIS PHE SER ILE CYS LEU GLU GLU LEU SER SEQRES 7 C 189 ARG LYS GLY PRO SER TYR THR TYR ASP THR MET LEU GLN SEQRES 8 C 189 LEU THR LYS LYS TYR PRO ASP VAL GLN PHE HIS PHE ILE SEQRES 9 C 189 ILE GLY GLY ASP MET VAL GLU TYR LEU PRO LYS TRP TYR SEQRES 10 C 189 ASN ILE GLU ALA LEU LEU ASP LEU VAL THR PHE VAL GLY SEQRES 11 C 189 VAL ALA ARG PRO GLY TYR LYS LEU ARG THR PRO TYR PRO SEQRES 12 C 189 ILE THR THR VAL GLU ILE PRO GLU PHE ALA VAL SER SER SEQRES 13 C 189 SER LEU LEU ARG GLU ARG TYR LYS GLU LYS LYS THR CYS SEQRES 14 C 189 LYS TYR LEU LEU PRO GLU LYS VAL GLN VAL TYR ILE GLU SEQRES 15 C 189 ARG ASN GLY LEU TYR GLU SER SEQRES 1 D 189 MET ARG LYS ILE GLY ILE ILE GLY GLY THR PHE ASP PRO SEQRES 2 D 189 PRO HIS TYR GLY HIS LEU LEU ILE ALA ASN GLU VAL TYR SEQRES 3 D 189 HIS ALA LEU ASN LEU GLU GLU VAL TRP PHE LEU PRO ASN SEQRES 4 D 189 GLN ILE PRO PRO HIS LYS GLN GLY ARG ASP ILE THR SER SEQRES 5 D 189 VAL GLU SER ARG LEU GLN MET LEU GLU LEU ALA THR GLU SEQRES 6 D 189 ALA GLU GLU HIS PHE SER ILE CYS LEU GLU GLU LEU SER SEQRES 7 D 189 ARG LYS GLY PRO SER TYR THR TYR ASP THR MET LEU GLN SEQRES 8 D 189 LEU THR LYS LYS TYR PRO ASP VAL GLN PHE HIS PHE ILE SEQRES 9 D 189 ILE GLY GLY ASP MET VAL GLU TYR LEU PRO LYS TRP TYR SEQRES 10 D 189 ASN ILE GLU ALA LEU LEU ASP LEU VAL THR PHE VAL GLY SEQRES 11 D 189 VAL ALA ARG PRO GLY TYR LYS LEU ARG THR PRO TYR PRO SEQRES 12 D 189 ILE THR THR VAL GLU ILE PRO GLU PHE ALA VAL SER SER SEQRES 13 D 189 SER LEU LEU ARG GLU ARG TYR LYS GLU LYS LYS THR CYS SEQRES 14 D 189 LYS TYR LEU LEU PRO GLU LYS VAL GLN VAL TYR ILE GLU SEQRES 15 D 189 ARG ASN GLY LEU TYR GLU SER HET DND A 191 44 HET MG A 190 1 HET DND B 191 44 HET MG B 190 1 HET DND C 191 44 HET MG C 190 1 HET DND D 191 44 HET MG D 190 1 HETNAM DND NICOTINIC ACID ADENINE DINUCLEOTIDE HETNAM MG MAGNESIUM ION HETSYN DND DEAMIDO-NAD+ FORMUL 5 DND 4(C21 H27 N6 O15 P2 1+) FORMUL 6 MG 4(MG 2+) FORMUL 13 HOH *494(H2 O) HELIX 1 1 HIS A 15 LEU A 29 1 15 HELIX 2 2 SER A 52 GLU A 65 1 14 HELIX 3 3 LEU A 74 SER A 78 5 5 HELIX 4 4 TYR A 84 TYR A 96 1 13 HELIX 5 5 GLY A 107 LEU A 113 1 7 HELIX 6 6 PRO A 114 TRP A 116 5 3 HELIX 7 7 ASN A 118 VAL A 126 1 9 HELIX 8 8 SER A 155 GLU A 165 1 11 HELIX 9 9 PRO A 174 GLY A 185 1 12 HELIX 10 10 HIS B 15 LEU B 29 1 15 HELIX 11 11 SER B 52 GLU B 65 1 14 HELIX 12 12 TYR B 84 TYR B 96 1 13 HELIX 13 13 GLY B 107 LEU B 113 1 7 HELIX 14 14 PRO B 114 TRP B 116 5 3 HELIX 15 15 ASN B 118 LEU B 123 1 6 HELIX 16 16 SER B 155 GLU B 165 1 11 HELIX 17 17 PRO B 174 ASN B 184 1 11 HELIX 18 18 HIS C 15 LEU C 29 1 15 HELIX 19 19 SER C 52 GLU C 65 1 14 HELIX 20 20 TYR C 84 TYR C 96 1 13 HELIX 21 21 GLY C 107 LEU C 113 1 7 HELIX 22 22 PRO C 114 TRP C 116 5 3 HELIX 23 23 ASN C 118 ASP C 124 1 7 HELIX 24 24 SER C 155 GLU C 165 1 11 HELIX 25 25 PRO C 174 ASN C 184 1 11 HELIX 26 26 HIS D 15 ASN D 30 1 16 HELIX 27 27 SER D 52 GLU D 65 1 14 HELIX 28 28 LEU D 74 ARG D 79 1 6 HELIX 29 29 TYR D 84 TYR D 96 1 13 HELIX 30 30 GLY D 107 LEU D 113 1 7 HELIX 31 31 PRO D 114 TRP D 116 5 3 HELIX 32 32 ASN D 118 VAL D 126 1 9 HELIX 33 33 SER D 155 GLU D 165 1 11 HELIX 34 34 PRO D 174 GLY D 185 1 12 SHEET 1 A 6 PHE A 70 ILE A 72 0 SHEET 2 A 6 GLU A 33 PRO A 38 1 N PHE A 36 O SER A 71 SHEET 3 A 6 LYS A 3 GLY A 9 1 N GLY A 5 O TRP A 35 SHEET 4 A 6 GLN A 100 GLY A 106 1 O ILE A 104 N ILE A 6 SHEET 5 A 6 THR A 127 VAL A 131 1 O THR A 127 N PHE A 103 SHEET 6 A 6 THR A 145 VAL A 147 1 O THR A 145 N GLY A 130 SHEET 1 B 6 PHE B 70 ILE B 72 0 SHEET 2 B 6 GLU B 33 PRO B 38 1 N PHE B 36 O SER B 71 SHEET 3 B 6 LYS B 3 GLY B 9 1 N GLY B 5 O GLU B 33 SHEET 4 B 6 GLN B 100 GLY B 106 1 O HIS B 102 N ILE B 4 SHEET 5 B 6 THR B 127 VAL B 131 1 O VAL B 129 N PHE B 103 SHEET 6 B 6 THR B 145 VAL B 147 1 O THR B 145 N GLY B 130 SHEET 1 C 6 PHE C 70 ILE C 72 0 SHEET 2 C 6 GLU C 33 PRO C 38 1 N PHE C 36 O SER C 71 SHEET 3 C 6 LYS C 3 GLY C 9 1 N GLY C 5 O TRP C 35 SHEET 4 C 6 GLN C 100 GLY C 106 1 O HIS C 102 N ILE C 6 SHEET 5 C 6 THR C 127 VAL C 131 1 O VAL C 129 N PHE C 103 SHEET 6 C 6 THR C 145 VAL C 147 1 O THR C 145 N GLY C 130 SHEET 1 D 6 PHE D 70 ILE D 72 0 SHEET 2 D 6 GLU D 33 PRO D 38 1 N PHE D 36 O SER D 71 SHEET 3 D 6 LYS D 3 GLY D 9 1 N ILE D 7 O TRP D 35 SHEET 4 D 6 GLN D 100 GLY D 106 1 O HIS D 102 N ILE D 4 SHEET 5 D 6 THR D 127 VAL D 131 1 O VAL D 129 N PHE D 103 SHEET 6 D 6 THR D 145 THR D 146 1 O THR D 145 N PHE D 128 LINK OD1 ASP A 108 MG MG A 190 1555 1555 2.65 LINK OD1 ASP B 108 MG MG B 190 1555 1555 2.66 LINK MG MG B 190 O12 DND B 191 1555 1555 2.58 LINK OD1 ASP C 108 MG MG C 190 1555 1555 2.55 LINK MG MG C 190 O12 DND C 191 1555 1555 2.90 LINK MG MG C 190 O HOH C 256 1555 1555 2.95 LINK OD1 ASP D 108 MG MG D 190 1555 1555 2.54 LINK MG MG D 190 O12 DND D 191 1555 1555 2.99 LINK MG MG D 190 O HOH D 297 1555 1555 2.44 CISPEP 1 ASP A 12 PRO A 13 0 1.05 CISPEP 2 ASP B 12 PRO B 13 0 1.63 CISPEP 3 ASP C 12 PRO C 13 0 -3.73 CISPEP 4 ASP D 12 PRO D 13 0 1.78 SITE 1 AC1 31 GLY A 8 GLY A 9 THR A 10 PHE A 11 SITE 2 AC1 31 HIS A 15 HIS A 18 ILE A 21 ASN A 39 SITE 3 AC1 31 PRO A 43 HIS A 44 LYS A 45 TYR A 84 SITE 4 AC1 31 THR A 85 ILE A 105 GLY A 106 ASP A 108 SITE 5 AC1 31 MET A 109 TRP A 116 TYR A 117 ARG A 133 SITE 6 AC1 31 PHE A 152 VAL A 154 MG A 190 HOH A 192 SITE 7 AC1 31 HOH A 207 HOH A 228 HOH A 230 HOH A 246 SITE 8 AC1 31 HOH A 247 HOH A 252 HOH A 254 SITE 1 AC2 3 ASP A 108 ARG A 133 DND A 191 SITE 1 AC3 29 GLY B 8 GLY B 9 THR B 10 PHE B 11 SITE 2 AC3 29 HIS B 15 HIS B 18 ILE B 21 ASN B 39 SITE 3 AC3 29 PRO B 43 HIS B 44 LYS B 45 TYR B 84 SITE 4 AC3 29 THR B 85 ILE B 105 GLY B 106 ASP B 108 SITE 5 AC3 29 TRP B 116 TYR B 117 ARG B 133 PHE B 152 SITE 6 AC3 29 VAL B 154 MG B 190 HOH B 193 HOH B 247 SITE 7 AC3 29 HOH B 256 HOH B 266 HOH B 271 HOH B 294 SITE 8 AC3 29 HOH B 297 SITE 1 AC4 4 ASP B 108 ARG B 133 DND B 191 HOH B 294 SITE 1 AC5 31 GLY C 8 GLY C 9 THR C 10 PHE C 11 SITE 2 AC5 31 HIS C 15 HIS C 18 ILE C 21 ASN C 39 SITE 3 AC5 31 PRO C 43 HIS C 44 LYS C 45 TYR C 84 SITE 4 AC5 31 THR C 85 ILE C 105 GLY C 106 ASP C 108 SITE 5 AC5 31 MET C 109 TRP C 116 TYR C 117 ARG C 133 SITE 6 AC5 31 PHE C 152 VAL C 154 MG C 190 HOH C 192 SITE 7 AC5 31 HOH C 240 HOH C 250 HOH C 260 HOH C 262 SITE 8 AC5 31 HOH C 264 HOH C 279 HOH C 287 SITE 1 AC6 4 ASP C 108 ARG C 133 DND C 191 HOH C 256 SITE 1 AC7 29 GLY D 8 GLY D 9 THR D 10 PHE D 11 SITE 2 AC7 29 HIS D 15 HIS D 18 ILE D 21 ASN D 39 SITE 3 AC7 29 PRO D 43 HIS D 44 LYS D 45 TYR D 84 SITE 4 AC7 29 THR D 85 ILE D 105 GLY D 106 ASP D 108 SITE 5 AC7 29 MET D 109 TRP D 116 TYR D 117 ARG D 133 SITE 6 AC7 29 PHE D 152 VAL D 154 MG D 190 HOH D 227 SITE 7 AC7 29 HOH D 244 HOH D 254 HOH D 265 HOH D 272 SITE 8 AC7 29 HOH D 295 SITE 1 AC8 4 ASP D 108 ARG D 133 DND D 191 HOH D 297 CRYST1 41.856 137.413 143.972 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006946 0.00000