HEADER ELECTRON TRANSPORT 05-AUG-08 3E2J TITLE CRYSTAL STRUCTURE OF BOVINE COUPLING FACTOR B COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT S, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ATP SYNTHASE-COUPLING FACTOR B, MITOCHONDRIAL ATP SYNTHASE COMPND 5 REGULATORY COMPONENT FACTOR B; COMPND 6 EC: 3.6.3.14; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: ATP5S, ATPW; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET43 KEYWDS LEUCINE-RICH REPEAT, CF0, HYDROGEN ION TRANSPORT, INNER MEMBRANE, ION KEYWDS 2 TRANSPORT, MEMBRANE, MITOCHONDRION, TRANSIT PEPTIDE, TRANSPORT, KEYWDS 3 ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.M.STROUD,J.K.LEE,G.I.BELOGRUDOV REVDAT 5 30-AUG-23 3E2J 1 REMARK SEQADV REVDAT 4 25-OCT-17 3E2J 1 REMARK REVDAT 3 24-FEB-09 3E2J 1 VERSN REVDAT 2 23-SEP-08 3E2J 1 JRNL REVDAT 1 19-AUG-08 3E2J 0 JRNL AUTH J.K.LEE,G.I.BELOGRUDOV,R.M.STROUD JRNL TITL CRYSTAL STRUCTURE OF BOVINE MITOCHONDRIAL FACTOR B AT 0.96-A JRNL TITL 2 RESOLUTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 13379 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18768789 JRNL DOI 10.1073/PNAS.0805689105 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 16766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 915 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 4.90000 REMARK 3 B33 (A**2) : -3.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.585 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.478 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.598 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5723 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7737 ; 1.746 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 698 ; 7.598 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;42.850 ;24.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;20.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;21.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 845 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4302 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3479 ; 0.692 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5568 ; 1.330 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2244 ; 1.759 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2168 ; 2.962 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 175 4 REMARK 3 1 B 1 B 175 4 REMARK 3 1 C 1 C 175 4 REMARK 3 1 D 1 D 175 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1326 ; 0.330 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1326 ; 0.330 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1326 ; 0.350 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 D (A): 1326 ; 0.350 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1326 ; 1.480 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1326 ; 1.500 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1326 ; 1.580 ; 2.000 REMARK 3 MEDIUM THERMAL 1 D (A**2): 1326 ; 1.440 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.111 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3DZE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PPG 400, 100 MM BIS-TRIS PH 6.5, REMARK 280 PH 7.4, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.85550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.85550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.77800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.97050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.77800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.97050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.85550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.77800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.97050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.85550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.77800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.97050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 SER B 0 REMARK 465 SER C 0 REMARK 465 SER D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 43 CG CD OE1 NE2 REMARK 470 ARG C 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 47 CG CD CE NZ REMARK 470 LYS C 88 CG CD CE NZ REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 LYS C 162 CG CD CE NZ REMARK 470 LYS C 171 CG CD CE NZ REMARK 470 LYS C 175 CG CD CE NZ REMARK 470 LYS D 11 CG CD CE NZ REMARK 470 ARG D 18 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 43 CG CD OE1 NE2 REMARK 470 ARG D 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 47 CG CD CE NZ REMARK 470 LYS D 88 CG CD CE NZ REMARK 470 LYS D 156 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 78 NH2 ARG B 104 1.41 REMARK 500 O PHE D 1 N GLY D 3 1.95 REMARK 500 OD2 ASP A 99 OG1 THR A 127 2.06 REMARK 500 O PHE B 1 N GLY B 3 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 33 CB CYS D 33 SG -0.124 REMARK 500 CYS D 92 CB CYS D 92 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 2 43.66 21.60 REMARK 500 ASP A 13 66.78 -100.51 REMARK 500 ILE A 17 -74.72 -52.36 REMARK 500 ASP A 19 -75.22 -58.96 REMARK 500 PRO A 56 95.94 -36.09 REMARK 500 PHE A 77 2.13 -68.27 REMARK 500 GLU A 98 -168.66 -162.05 REMARK 500 SER A 106 19.47 -65.80 REMARK 500 ASP A 147 59.60 32.83 REMARK 500 LYS A 154 -84.05 -35.91 REMARK 500 GLU A 155 -41.94 -24.70 REMARK 500 LEU A 165 83.54 -152.12 REMARK 500 ASP A 173 50.89 -140.84 REMARK 500 TRP B 2 18.51 35.43 REMARK 500 ASP B 13 75.46 -114.80 REMARK 500 TYR B 49 -39.85 -34.41 REMARK 500 PRO B 56 95.95 -41.07 REMARK 500 ILE B 75 -1.46 -49.71 REMARK 500 ILE B 131 -71.52 -26.84 REMARK 500 ASP B 147 68.11 37.22 REMARK 500 ASP B 173 54.15 -146.25 REMARK 500 TRP C 2 12.87 41.33 REMARK 500 ASP C 13 72.30 -106.71 REMARK 500 HIS C 14 -17.46 -47.70 REMARK 500 ALA C 26 -39.33 -39.15 REMARK 500 PRO C 56 79.96 -27.31 REMARK 500 GLU C 81 -64.01 -12.00 REMARK 500 HIS C 136 -10.58 -44.09 REMARK 500 ASP C 147 57.41 36.10 REMARK 500 GLN C 159 -72.26 -61.06 REMARK 500 ASP C 173 52.73 -141.63 REMARK 500 TRP D 2 56.23 -33.28 REMARK 500 HIS D 40 121.98 -17.71 REMARK 500 PRO D 53 103.96 -52.26 REMARK 500 PRO D 56 83.63 -37.47 REMARK 500 ASP D 58 -11.20 75.07 REMARK 500 ASP D 69 38.29 71.76 REMARK 500 ILE D 75 -8.69 -50.59 REMARK 500 GLU D 98 -168.23 -165.39 REMARK 500 GLU D 103 -72.05 -32.67 REMARK 500 GLN D 112 -33.49 -29.34 REMARK 500 LYS D 113 -71.59 -76.22 REMARK 500 CYS D 123 79.34 -116.71 REMARK 500 HIS D 136 8.93 -61.97 REMARK 500 PHE D 137 62.05 -102.82 REMARK 500 ASP D 147 70.56 51.20 REMARK 500 PRO D 149 -8.56 -51.98 REMARK 500 LEU D 170 70.89 -112.33 REMARK 500 ASP D 173 45.47 -147.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DZE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE COUPLING FACTOR B BOUND TO CADMIUM REMARK 900 RELATED ID: 3E3Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE COUPLING FACTOR B BOUND WITH REMARK 900 PHENYLARSINE OXIDE REMARK 900 RELATED ID: 3E4G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE COUPLING FACTOR B, G28E MUTANT DBREF 3E2J A 1 175 UNP P22027 ATP5S_BOVIN 26 200 DBREF 3E2J B 1 175 UNP P22027 ATP5S_BOVIN 26 200 DBREF 3E2J C 1 175 UNP P22027 ATP5S_BOVIN 26 200 DBREF 3E2J D 1 175 UNP P22027 ATP5S_BOVIN 26 200 SEQADV 3E2J SER A 0 UNP P22027 EXPRESSION TAG SEQADV 3E2J SER B 0 UNP P22027 EXPRESSION TAG SEQADV 3E2J SER C 0 UNP P22027 EXPRESSION TAG SEQADV 3E2J SER D 0 UNP P22027 EXPRESSION TAG SEQRES 1 A 176 SER PHE TRP GLY TRP LEU ASN ALA VAL PHE ASN LYS VAL SEQRES 2 A 176 ASP HIS ASP ARG ILE ARG ASP VAL GLY PRO ASP ARG ALA SEQRES 3 A 176 ALA SER GLU TRP LEU LEU ARG CYS GLY ALA MET VAL ARG SEQRES 4 A 176 TYR HIS GLY GLN GLN ARG TRP GLN LYS ASP TYR ASN HIS SEQRES 5 A 176 LEU PRO THR GLY PRO LEU ASP LYS TYR LYS ILE GLN ALA SEQRES 6 A 176 ILE ASP ALA THR ASP SER CYS ILE MET SER ILE GLY PHE SEQRES 7 A 176 ASP HIS MET GLU GLY LEU GLN TYR VAL GLU LYS ILE ARG SEQRES 8 A 176 LEU CYS LYS CYS HIS TYR ILE GLU ASP GLY CYS LEU GLU SEQRES 9 A 176 ARG LEU SER GLN LEU GLU ASN LEU GLN LYS SER MET LEU SEQRES 10 A 176 GLU MET GLU ILE ILE SER CYS GLY ASN VAL THR ASP LYS SEQRES 11 A 176 GLY ILE ILE ALA LEU HIS HIS PHE ARG ASN LEU LYS TYR SEQRES 12 A 176 LEU PHE LEU SER ASP LEU PRO GLY VAL LYS GLU LYS GLU SEQRES 13 A 176 LYS ILE VAL GLN ALA PHE LYS THR SER LEU PRO SER LEU SEQRES 14 A 176 GLU LEU LYS LEU ASP LEU LYS SEQRES 1 B 176 SER PHE TRP GLY TRP LEU ASN ALA VAL PHE ASN LYS VAL SEQRES 2 B 176 ASP HIS ASP ARG ILE ARG ASP VAL GLY PRO ASP ARG ALA SEQRES 3 B 176 ALA SER GLU TRP LEU LEU ARG CYS GLY ALA MET VAL ARG SEQRES 4 B 176 TYR HIS GLY GLN GLN ARG TRP GLN LYS ASP TYR ASN HIS SEQRES 5 B 176 LEU PRO THR GLY PRO LEU ASP LYS TYR LYS ILE GLN ALA SEQRES 6 B 176 ILE ASP ALA THR ASP SER CYS ILE MET SER ILE GLY PHE SEQRES 7 B 176 ASP HIS MET GLU GLY LEU GLN TYR VAL GLU LYS ILE ARG SEQRES 8 B 176 LEU CYS LYS CYS HIS TYR ILE GLU ASP GLY CYS LEU GLU SEQRES 9 B 176 ARG LEU SER GLN LEU GLU ASN LEU GLN LYS SER MET LEU SEQRES 10 B 176 GLU MET GLU ILE ILE SER CYS GLY ASN VAL THR ASP LYS SEQRES 11 B 176 GLY ILE ILE ALA LEU HIS HIS PHE ARG ASN LEU LYS TYR SEQRES 12 B 176 LEU PHE LEU SER ASP LEU PRO GLY VAL LYS GLU LYS GLU SEQRES 13 B 176 LYS ILE VAL GLN ALA PHE LYS THR SER LEU PRO SER LEU SEQRES 14 B 176 GLU LEU LYS LEU ASP LEU LYS SEQRES 1 C 176 SER PHE TRP GLY TRP LEU ASN ALA VAL PHE ASN LYS VAL SEQRES 2 C 176 ASP HIS ASP ARG ILE ARG ASP VAL GLY PRO ASP ARG ALA SEQRES 3 C 176 ALA SER GLU TRP LEU LEU ARG CYS GLY ALA MET VAL ARG SEQRES 4 C 176 TYR HIS GLY GLN GLN ARG TRP GLN LYS ASP TYR ASN HIS SEQRES 5 C 176 LEU PRO THR GLY PRO LEU ASP LYS TYR LYS ILE GLN ALA SEQRES 6 C 176 ILE ASP ALA THR ASP SER CYS ILE MET SER ILE GLY PHE SEQRES 7 C 176 ASP HIS MET GLU GLY LEU GLN TYR VAL GLU LYS ILE ARG SEQRES 8 C 176 LEU CYS LYS CYS HIS TYR ILE GLU ASP GLY CYS LEU GLU SEQRES 9 C 176 ARG LEU SER GLN LEU GLU ASN LEU GLN LYS SER MET LEU SEQRES 10 C 176 GLU MET GLU ILE ILE SER CYS GLY ASN VAL THR ASP LYS SEQRES 11 C 176 GLY ILE ILE ALA LEU HIS HIS PHE ARG ASN LEU LYS TYR SEQRES 12 C 176 LEU PHE LEU SER ASP LEU PRO GLY VAL LYS GLU LYS GLU SEQRES 13 C 176 LYS ILE VAL GLN ALA PHE LYS THR SER LEU PRO SER LEU SEQRES 14 C 176 GLU LEU LYS LEU ASP LEU LYS SEQRES 1 D 176 SER PHE TRP GLY TRP LEU ASN ALA VAL PHE ASN LYS VAL SEQRES 2 D 176 ASP HIS ASP ARG ILE ARG ASP VAL GLY PRO ASP ARG ALA SEQRES 3 D 176 ALA SER GLU TRP LEU LEU ARG CYS GLY ALA MET VAL ARG SEQRES 4 D 176 TYR HIS GLY GLN GLN ARG TRP GLN LYS ASP TYR ASN HIS SEQRES 5 D 176 LEU PRO THR GLY PRO LEU ASP LYS TYR LYS ILE GLN ALA SEQRES 6 D 176 ILE ASP ALA THR ASP SER CYS ILE MET SER ILE GLY PHE SEQRES 7 D 176 ASP HIS MET GLU GLY LEU GLN TYR VAL GLU LYS ILE ARG SEQRES 8 D 176 LEU CYS LYS CYS HIS TYR ILE GLU ASP GLY CYS LEU GLU SEQRES 9 D 176 ARG LEU SER GLN LEU GLU ASN LEU GLN LYS SER MET LEU SEQRES 10 D 176 GLU MET GLU ILE ILE SER CYS GLY ASN VAL THR ASP LYS SEQRES 11 D 176 GLY ILE ILE ALA LEU HIS HIS PHE ARG ASN LEU LYS TYR SEQRES 12 D 176 LEU PHE LEU SER ASP LEU PRO GLY VAL LYS GLU LYS GLU SEQRES 13 D 176 LYS ILE VAL GLN ALA PHE LYS THR SER LEU PRO SER LEU SEQRES 14 D 176 GLU LEU LYS LEU ASP LEU LYS HET MG A 301 1 HET MG B 301 1 HET MG C 301 1 HET MG D 301 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 4(MG 2+) FORMUL 9 HOH *25(H2 O) HELIX 1 1 TRP A 4 ASN A 10 1 7 HELIX 2 2 ASP A 13 GLY A 21 1 9 HELIX 3 3 GLY A 21 CYS A 33 1 13 HELIX 4 4 ASP A 48 LEU A 52 5 5 HELIX 5 5 MET A 73 GLU A 81 5 9 HELIX 6 6 GLU A 98 SER A 106 1 9 HELIX 7 7 LEU A 108 MET A 115 1 8 HELIX 8 8 THR A 127 ALA A 133 1 7 HELIX 9 9 LEU A 134 PHE A 137 5 4 HELIX 10 10 GLU A 153 LEU A 165 1 13 HELIX 11 11 TRP B 4 ASN B 10 1 7 HELIX 12 12 ASP B 13 CYS B 33 1 21 HELIX 13 13 ASP B 48 LEU B 52 5 5 HELIX 14 14 MET B 73 GLU B 81 5 9 HELIX 15 15 GLU B 98 GLN B 107 1 10 HELIX 16 16 LEU B 108 MET B 115 1 8 HELIX 17 17 THR B 127 ALA B 133 1 7 HELIX 18 18 LEU B 134 PHE B 137 5 4 HELIX 19 19 GLU B 153 LEU B 165 1 13 HELIX 20 20 GLY C 3 ASN C 10 1 8 HELIX 21 21 ASP C 13 CYS C 33 1 21 HELIX 22 22 MET C 73 GLY C 76 5 4 HELIX 23 23 PHE C 77 GLY C 82 1 6 HELIX 24 24 GLU C 98 GLN C 107 1 10 HELIX 25 25 LEU C 108 MET C 115 1 8 HELIX 26 26 THR C 127 ALA C 133 1 7 HELIX 27 27 LEU C 134 PHE C 137 5 4 HELIX 28 28 GLU C 153 LEU C 165 1 13 HELIX 29 29 TRP D 4 LYS D 11 1 8 HELIX 30 30 ASP D 13 GLY D 21 1 9 HELIX 31 31 GLY D 21 CYS D 33 1 13 HELIX 32 32 ASP D 48 LEU D 52 5 5 HELIX 33 33 MET D 73 GLU D 81 5 9 HELIX 34 34 GLU D 98 GLN D 107 1 10 HELIX 35 35 LEU D 108 MET D 115 1 8 HELIX 36 36 THR D 127 ALA D 133 1 7 HELIX 37 37 LEU D 134 PHE D 137 5 4 HELIX 38 38 GLU D 153 LEU D 165 1 13 SHEET 1 A 6 MET A 36 TYR A 39 0 SHEET 2 A 6 ILE A 62 THR A 68 -1 O GLN A 63 N ARG A 38 SHEET 3 A 6 LYS A 88 CYS A 92 1 O CYS A 92 N ALA A 67 SHEET 4 A 6 GLU A 117 ILE A 121 1 O GLU A 119 N LEU A 91 SHEET 5 A 6 TYR A 142 SER A 146 1 O PHE A 144 N ILE A 120 SHEET 6 A 6 LEU A 172 ASP A 173 1 O ASP A 173 N LEU A 145 SHEET 1 B 6 MET B 36 TYR B 39 0 SHEET 2 B 6 ILE B 62 THR B 68 -1 O GLN B 63 N ARG B 38 SHEET 3 B 6 LYS B 88 CYS B 92 1 O CYS B 92 N ALA B 67 SHEET 4 B 6 GLU B 117 ILE B 121 1 O GLU B 119 N LEU B 91 SHEET 5 B 6 TYR B 142 SER B 146 1 O PHE B 144 N MET B 118 SHEET 6 B 6 LEU B 172 ASP B 173 1 O ASP B 173 N LEU B 145 SHEET 1 C 6 MET C 36 TYR C 39 0 SHEET 2 C 6 ILE C 62 THR C 68 -1 O ALA C 64 N ARG C 38 SHEET 3 C 6 LYS C 88 CYS C 92 1 O ARG C 90 N ALA C 67 SHEET 4 C 6 GLU C 117 ILE C 121 1 O GLU C 119 N LEU C 91 SHEET 5 C 6 TYR C 142 SER C 146 1 O SER C 146 N ILE C 120 SHEET 6 C 6 LEU C 172 ASP C 173 1 O ASP C 173 N LEU C 145 SHEET 1 D 6 MET D 36 ARG D 38 0 SHEET 2 D 6 ALA D 64 THR D 68 -1 O ASP D 66 N MET D 36 SHEET 3 D 6 LYS D 88 CYS D 92 1 O LYS D 88 N ILE D 65 SHEET 4 D 6 GLU D 117 ILE D 121 1 O GLU D 119 N LEU D 91 SHEET 5 D 6 TYR D 142 SER D 146 1 O TYR D 142 N MET D 118 SHEET 6 D 6 LEU D 172 ASP D 173 1 O ASP D 173 N LEU D 145 LINK O GLY A 34 MG MG A 301 1555 1555 2.24 LINK O THR D 68 MG MG D 301 1555 1555 2.38 SITE 1 AC1 3 GLY A 34 THR A 68 ASP A 69 SITE 1 AC2 3 GLY B 34 THR B 68 ASP B 69 SITE 1 AC3 2 GLY C 34 THR C 68 SITE 1 AC4 2 GLY D 34 THR D 68 CRYST1 99.556 133.941 115.711 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010045 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008642 0.00000