HEADER OXIDOREDUCTASE 06-AUG-08 3E2R TITLE CRYSTAL STRUCTURE PUTA86-630 MUTANT Y540S COMPLEXED WITH L-TETRAHYDRO- TITLE 2 2-FUROIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 86-630; COMPND 5 SYNONYM: PROLINE OXIDASE; COMPND 6 EC: 1.5.99.8; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PUTA, POAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS PROLINE UTILIZATION A, PUTA, FLAVOENZYME, DNA-BINDING, FAD, KEYWDS 2 FLAVOPROTEIN, MULTIFUNCTIONAL ENZYME, NAD, OXIDOREDUCTASE, PROLINE KEYWDS 3 METABOLISM, REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER REVDAT 5 21-FEB-24 3E2R 1 REMARK REVDAT 4 20-OCT-21 3E2R 1 REMARK SEQADV REVDAT 3 25-OCT-17 3E2R 1 REMARK REVDAT 2 12-JAN-11 3E2R 1 JRNL REVDAT 1 03-FEB-09 3E2R 0 JRNL AUTH E.L.OSTRANDER,J.D.LARSON,J.P.SCHUERMANN,J.J.TANNER JRNL TITL A CONSERVED ACTIVE SITE TYROSINE RESIDUE OF PROLINE JRNL TITL 2 DEHYDROGENASE HELPS ENFORCE THE PREFERENCE FOR PROLINE OVER JRNL TITL 3 HYDROXYPROLINE AS THE SUBSTRATE. JRNL REF BIOCHEMISTRY V. 48 951 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19140736 JRNL DOI 10.1021/BI802094K REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 63730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1730 - 3.9860 1.00 6349 318 0.1930 0.2200 REMARK 3 2 3.9860 - 3.1640 1.00 6144 314 0.2000 0.2230 REMARK 3 3 3.1640 - 2.7640 1.00 6101 332 0.2110 0.2350 REMARK 3 4 2.7640 - 2.5110 1.00 6097 299 0.1930 0.2190 REMARK 3 5 2.5110 - 2.3310 1.00 6046 334 0.1810 0.2050 REMARK 3 6 2.3310 - 2.1940 1.00 6036 316 0.1840 0.2170 REMARK 3 7 2.1940 - 2.0840 1.00 6051 313 0.1880 0.2390 REMARK 3 8 2.0840 - 1.9930 1.00 6010 334 0.1900 0.2130 REMARK 3 9 1.9930 - 1.9160 1.00 5978 343 0.2080 0.2520 REMARK 3 10 1.9160 - 1.8500 0.95 5705 310 0.2310 0.2830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 46.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3740 REMARK 3 ANGLE : 0.962 5077 REMARK 3 CHIRALITY : 0.058 559 REMARK 3 PLANARITY : 0.010 654 REMARK 3 DIHEDRAL : 19.270 1401 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 88-138 OR RESID 240-610) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9164 44.9052 52.9196 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.2657 REMARK 3 T33: 0.0244 T12: -0.0139 REMARK 3 T13: 0.0088 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.6079 L22: 0.2693 REMARK 3 L33: 1.3713 L12: -0.0017 REMARK 3 L13: -0.5218 L23: 0.3495 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.0176 S13: -0.0000 REMARK 3 S21: -0.0723 S22: 0.0877 S23: -0.0121 REMARK 3 S31: -0.1569 S32: 0.1402 S33: -0.1273 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 139-184 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5023 79.1418 30.8904 REMARK 3 T TENSOR REMARK 3 T11: 0.5351 T22: 0.3312 REMARK 3 T33: 0.0727 T12: -0.0143 REMARK 3 T13: -0.2318 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: -0.0501 L22: 0.2691 REMARK 3 L33: -0.7995 L12: 0.0500 REMARK 3 L13: -0.1404 L23: -0.0605 REMARK 3 S TENSOR REMARK 3 S11: 0.3200 S12: 0.1213 S13: 0.0404 REMARK 3 S21: -0.4423 S22: 0.0726 S23: 0.1233 REMARK 3 S31: 0.4964 S32: -0.0980 S33: -0.2953 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : BEAMLINE OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CITRATE BUFFER PH 5.8-6.0, 15 REMARK 280 -18% PEG 3350, VAPOR DIFFUSION, TEMPERATURE 298K, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.32400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.05100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.33250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.32400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.05100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.33250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.32400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.05100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.33250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.32400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.05100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.33250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.10200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2697 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2732 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 86 REMARK 465 PRO A 87 REMARK 465 ILE A 185 REMARK 465 ARG A 186 REMARK 465 ASP A 187 REMARK 465 LYS A 188 REMARK 465 ILE A 189 REMARK 465 SER A 190 REMARK 465 ASN A 191 REMARK 465 GLY A 192 REMARK 465 ASN A 193 REMARK 465 TRP A 194 REMARK 465 GLN A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 ARG A 200 REMARK 465 SER A 201 REMARK 465 PRO A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 PHE A 205 REMARK 465 VAL A 206 REMARK 465 ASN A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 THR A 210 REMARK 465 TRP A 211 REMARK 465 GLY A 212 REMARK 465 LEU A 213 REMARK 465 LEU A 214 REMARK 465 PHE A 215 REMARK 465 THR A 216 REMARK 465 GLY A 217 REMARK 465 LYS A 218 REMARK 465 LEU A 219 REMARK 465 VAL A 220 REMARK 465 SER A 221 REMARK 465 THR A 222 REMARK 465 HIS A 223 REMARK 465 ASN A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 SER A 227 REMARK 465 LEU A 228 REMARK 465 SER A 229 REMARK 465 ARG A 230 REMARK 465 SER A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 ARG A 234 REMARK 465 ILE A 235 REMARK 465 ILE A 236 REMARK 465 GLY A 237 REMARK 465 LYS A 238 REMARK 465 SER A 239 REMARK 465 LEU A 611 REMARK 465 TYR A 612 REMARK 465 GLY A 613 REMARK 465 HIS A 614 REMARK 465 GLY A 615 REMARK 465 ARG A 616 REMARK 465 ASP A 617 REMARK 465 ASN A 618 REMARK 465 SER A 619 REMARK 465 ALA A 620 REMARK 465 GLY A 621 REMARK 465 LEU A 622 REMARK 465 ASP A 623 REMARK 465 LEU A 624 REMARK 465 ALA A 625 REMARK 465 ASN A 626 REMARK 465 GLU A 627 REMARK 465 HIS A 628 REMARK 465 ARG A 629 REMARK 465 LEU A 630 REMARK 465 HIS A 631 REMARK 465 HIS A 632 REMARK 465 HIS A 633 REMARK 465 HIS A 634 REMARK 465 HIS A 635 REMARK 465 HIS A 636 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 GLN A 130 CG CD OE1 NE2 REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 MET A 147 CG SD CE REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 LEU A 151 CG CD1 CD2 REMARK 470 LEU A 152 CG CD1 CD2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 PHE A 155 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 156 OG REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 SER A 158 OG REMARK 470 SER A 159 OG REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 ARG A 245 NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 425 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 444 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 155 -8.75 -160.80 REMARK 500 GLU A 372 -135.65 -116.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TFB A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 2502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 2503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 2003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TIW RELATED DB: PDB REMARK 900 NATIVE ENZYME COMPLEXED WITH PROLINE ANALOG L-TETRAHYDRO-2-FUROIC REMARK 900 ACID REMARK 900 RELATED ID: 3E2Q RELATED DB: PDB REMARK 900 STRUCTURE REDUCED PUTA86-630 MUTANT Y540S COMPLEXED WITH TRANS-4- REMARK 900 HYDROXY-L-PROLINE REMARK 900 RELATED ID: 3E2S RELATED DB: PDB REMARK 900 STRUCTURE REDUCED PUTA86-630 MUTANT Y540S COMPLEXED WITH L-PROLINE DBREF 3E2R A 86 630 UNP P09546 PUTA_ECOLI 86 630 SEQADV 3E2R SER A 540 UNP P09546 TYR 540 ENGINEERED MUTATION SEQADV 3E2R HIS A 631 UNP P09546 EXPRESSION TAG SEQADV 3E2R HIS A 632 UNP P09546 EXPRESSION TAG SEQADV 3E2R HIS A 633 UNP P09546 EXPRESSION TAG SEQADV 3E2R HIS A 634 UNP P09546 EXPRESSION TAG SEQADV 3E2R HIS A 635 UNP P09546 EXPRESSION TAG SEQADV 3E2R HIS A 636 UNP P09546 EXPRESSION TAG SEQRES 1 A 551 LEU PRO GLN SER VAL SER ARG ALA ALA ILE THR ALA ALA SEQRES 2 A 551 TYR ARG ARG PRO GLU THR GLU ALA VAL SER MET LEU LEU SEQRES 3 A 551 GLU GLN ALA ARG LEU PRO GLN PRO VAL ALA GLU GLN ALA SEQRES 4 A 551 HIS LYS LEU ALA TYR GLN LEU ALA ASP LYS LEU ARG ASN SEQRES 5 A 551 GLN LYS ASN ALA SER GLY ARG ALA GLY MET VAL GLN GLY SEQRES 6 A 551 LEU LEU GLN GLU PHE SER LEU SER SER GLN GLU GLY VAL SEQRES 7 A 551 ALA LEU MET CYS LEU ALA GLU ALA LEU LEU ARG ILE PRO SEQRES 8 A 551 ASP LYS ALA THR ARG ASP ALA LEU ILE ARG ASP LYS ILE SEQRES 9 A 551 SER ASN GLY ASN TRP GLN SER HIS ILE GLY ARG SER PRO SEQRES 10 A 551 SER LEU PHE VAL ASN ALA ALA THR TRP GLY LEU LEU PHE SEQRES 11 A 551 THR GLY LYS LEU VAL SER THR HIS ASN GLU ALA SER LEU SEQRES 12 A 551 SER ARG SER LEU ASN ARG ILE ILE GLY LYS SER GLY GLU SEQRES 13 A 551 PRO LEU ILE ARG LYS GLY VAL ASP MET ALA MET ARG LEU SEQRES 14 A 551 MET GLY GLU GLN PHE VAL THR GLY GLU THR ILE ALA GLU SEQRES 15 A 551 ALA LEU ALA ASN ALA ARG LYS LEU GLU GLU LYS GLY PHE SEQRES 16 A 551 ARG TYR SER TYR ASP MET LEU GLY GLU ALA ALA LEU THR SEQRES 17 A 551 ALA ALA ASP ALA GLN ALA TYR MET VAL SER TYR GLN GLN SEQRES 18 A 551 ALA ILE HIS ALA ILE GLY LYS ALA SER ASN GLY ARG GLY SEQRES 19 A 551 ILE TYR GLU GLY PRO GLY ILE SER ILE LYS LEU SER ALA SEQRES 20 A 551 LEU HIS PRO ARG TYR SER ARG ALA GLN TYR ASP ARG VAL SEQRES 21 A 551 MET GLU GLU LEU TYR PRO ARG LEU LYS SER LEU THR LEU SEQRES 22 A 551 LEU ALA ARG GLN TYR ASP ILE GLY ILE ASN ILE ASP ALA SEQRES 23 A 551 GLU GLU SER ASP ARG LEU GLU ILE SER LEU ASP LEU LEU SEQRES 24 A 551 GLU LYS LEU CYS PHE GLU PRO GLU LEU ALA GLY TRP ASN SEQRES 25 A 551 GLY ILE GLY PHE VAL ILE GLN ALA TYR GLN LYS ARG CYS SEQRES 26 A 551 PRO LEU VAL ILE ASP TYR LEU ILE ASP LEU ALA THR ARG SEQRES 27 A 551 SER ARG ARG ARG LEU MET ILE ARG LEU VAL LYS GLY ALA SEQRES 28 A 551 TYR TRP ASP SER GLU ILE LYS ARG ALA GLN MET ASP GLY SEQRES 29 A 551 LEU GLU GLY TYR PRO VAL TYR THR ARG LYS VAL TYR THR SEQRES 30 A 551 ASP VAL SER TYR LEU ALA CYS ALA LYS LYS LEU LEU ALA SEQRES 31 A 551 VAL PRO ASN LEU ILE TYR PRO GLN PHE ALA THR HIS ASN SEQRES 32 A 551 ALA HIS THR LEU ALA ALA ILE TYR GLN LEU ALA GLY GLN SEQRES 33 A 551 ASN TYR TYR PRO GLY GLN TYR GLU PHE GLN CYS LEU HIS SEQRES 34 A 551 GLY MET GLY GLU PRO LEU TYR GLU GLN VAL THR GLY LYS SEQRES 35 A 551 VAL ALA ASP GLY LYS LEU ASN ARG PRO CYS ARG ILE SER SEQRES 36 A 551 ALA PRO VAL GLY THR HIS GLU THR LEU LEU ALA TYR LEU SEQRES 37 A 551 VAL ARG ARG LEU LEU GLU ASN GLY ALA ASN THR SER PHE SEQRES 38 A 551 VAL ASN ARG ILE ALA ASP THR SER LEU PRO LEU ASP GLU SEQRES 39 A 551 LEU VAL ALA ASP PRO VAL THR ALA VAL GLU LYS LEU ALA SEQRES 40 A 551 GLN GLN GLU GLY GLN THR GLY LEU PRO HIS PRO LYS ILE SEQRES 41 A 551 PRO LEU PRO ARG ASP LEU TYR GLY HIS GLY ARG ASP ASN SEQRES 42 A 551 SER ALA GLY LEU ASP LEU ALA ASN GLU HIS ARG LEU HIS SEQRES 43 A 551 HIS HIS HIS HIS HIS HET FAD A2001 53 HET TFB A2002 8 HET CIT A2502 13 HET 1PE A2503 16 HET 1PE A2003 16 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM TFB TETRAHYDROFURAN-2-CARBOXYLIC ACID HETNAM CIT CITRIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 TFB C5 H8 O3 FORMUL 4 CIT C6 H8 O7 FORMUL 5 1PE 2(C10 H22 O6) FORMUL 7 HOH *266(H2 O) HELIX 1 1 SER A 89 TYR A 99 1 11 HELIX 2 2 PRO A 102 ARG A 115 1 14 HELIX 3 3 PRO A 117 ASN A 137 1 21 HELIX 4 4 ASN A 140 LEU A 152 1 13 HELIX 5 5 SER A 158 LEU A 173 1 16 HELIX 6 6 ASP A 177 LEU A 184 1 8 HELIX 7 7 GLY A 240 GLU A 257 1 18 HELIX 8 8 GLN A 258 VAL A 260 5 3 HELIX 9 9 THR A 264 ASN A 271 1 8 HELIX 10 10 ALA A 272 GLU A 277 1 6 HELIX 11 11 THR A 293 ASN A 316 1 24 HELIX 12 12 ARG A 318 GLY A 323 1 6 HELIX 13 13 LYS A 329 LEU A 333 5 5 HELIX 14 14 ARG A 336 ALA A 340 5 5 HELIX 15 15 GLN A 341 TYR A 363 1 23 HELIX 16 16 GLU A 373 ASP A 375 5 3 HELIX 17 17 ARG A 376 PHE A 389 1 14 HELIX 18 18 GLU A 390 ALA A 394 5 5 HELIX 19 19 ARG A 409 SER A 424 1 16 HELIX 20 20 TYR A 437 GLY A 449 1 13 HELIX 21 21 ARG A 458 ALA A 475 1 18 HELIX 22 22 ASN A 488 ALA A 499 1 12 HELIX 23 23 TYR A 504 TYR A 508 5 5 HELIX 24 24 GLY A 517 GLU A 522 1 6 HELIX 25 25 LYS A 527 GLY A 531 5 5 HELIX 26 26 THR A 545 THR A 548 5 4 HELIX 27 27 LEU A 549 ALA A 562 1 14 HELIX 28 28 SER A 565 ILE A 570 1 6 HELIX 29 29 PRO A 576 VAL A 581 1 6 HELIX 30 30 ASP A 583 GLY A 596 1 14 SHEET 1 A 9 PHE A 280 MET A 286 0 SHEET 2 A 9 GLY A 325 ILE A 328 1 O SER A 327 N TYR A 284 SHEET 3 A 9 ILE A 367 ILE A 369 1 O ASN A 368 N ILE A 328 SHEET 4 A 9 ILE A 399 GLN A 404 1 O GLY A 400 N ILE A 367 SHEET 5 A 9 LEU A 428 VAL A 433 1 O ARG A 431 N ILE A 403 SHEET 6 A 9 ILE A 480 ALA A 485 1 O TYR A 481 N LEU A 428 SHEET 7 A 9 GLU A 509 LEU A 513 1 O GLU A 509 N PHE A 484 SHEET 8 A 9 CYS A 537 VAL A 543 1 O SER A 540 N CYS A 512 SHEET 9 A 9 PHE A 280 MET A 286 1 N ARG A 281 O ILE A 539 SITE 1 AC1 31 ASP A 370 ALA A 371 GLN A 404 TYR A 406 SITE 2 AC1 31 LYS A 434 GLY A 435 ALA A 436 TYR A 437 SITE 3 AC1 31 TRP A 438 TYR A 456 THR A 457 ARG A 458 SITE 4 AC1 31 LYS A 459 THR A 462 ALA A 485 THR A 486 SITE 5 AC1 31 HIS A 487 ASN A 488 GLN A 511 CYS A 512 SITE 6 AC1 31 LEU A 513 ARG A 556 GLU A 559 SER A 565 SITE 7 AC1 31 PHE A 566 HOH A2504 HOH A2510 HOH A2511 SITE 8 AC1 31 HOH A2552 HOH A2644 HOH A2769 SITE 1 AC2 8 ASP A 285 LYS A 329 ASP A 370 ALA A 436 SITE 2 AC2 8 TYR A 552 ARG A 555 ARG A 556 HOH A2634 SITE 1 AC3 5 ARG A 339 ARG A 458 HIS A 602 PRO A 603 SITE 2 AC3 5 LYS A 604 SITE 1 AC4 6 ARG A 144 ARG A 174 LEU A 254 MET A 255 SITE 2 AC4 6 ASN A 560 HOH A2738 SITE 1 AC5 7 THR A 422 ARG A 425 ARG A 426 LEU A 474 SITE 2 AC5 7 ASN A 478 LEU A 498 ALA A 499 CRYST1 72.648 140.102 146.665 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007138 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006818 0.00000