HEADER HYDROLASE 06-AUG-08 3E2V TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED AMIDOHYDROLASE FROM TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'-5'-EXONUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 307796; SOURCE 5 STRAIN: YJM789; SOURCE 6 GENE: SCY_0164; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, HYDROLASE, EXONUCLEASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.DICKEY,K.T.BAIN,S.HU,R.ROMERO,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 20-NOV-24 3E2V 1 REMARK REVDAT 6 10-FEB-21 3E2V 1 AUTHOR JRNL REMARK LINK REVDAT 5 14-NOV-18 3E2V 1 AUTHOR REVDAT 4 25-OCT-17 3E2V 1 REMARK REVDAT 3 13-JUL-11 3E2V 1 VERSN REVDAT 2 24-FEB-09 3E2V 1 VERSN REVDAT 1 26-AUG-08 3E2V 0 JRNL AUTH J.B.BONANNO,M.DICKEY,K.T.BAIN,S.HU,R.ROMERO,D.SMITH, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN UNCHARACTERIZED AMIDOHYDROLASE FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 123161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6190 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 455 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5793 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 704 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.112 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5998 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8119 ; 1.238 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 741 ; 5.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;35.156 ;24.710 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1065 ;11.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;13.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4475 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2917 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4154 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 541 ; 0.104 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.088 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.089 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3755 ; 0.841 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5907 ; 1.366 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2521 ; 2.314 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2201 ; 3.361 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 114.708 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41300 REMARK 200 R SYM FOR SHELL (I) : 0.41300 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS HCL PH 9, 32% PEG 4K, 200MM REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE, PH 9.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.50350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS PROBABLE MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 SER A 26 REMARK 465 LEU A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 ASP A 33 REMARK 465 SER A 34 REMARK 465 ASP A 123 REMARK 465 ALA A 124 REMARK 465 SER A 125 REMARK 465 GLN A 126 REMARK 465 GLY A 127 REMARK 465 ASP A 128 REMARK 465 LYS A 129 REMARK 465 ALA A 130 REMARK 465 SER A 131 REMARK 465 ALA A 132 REMARK 465 SER A 133 REMARK 465 ILE A 134 REMARK 465 ASP A 135 REMARK 465 ASN A 136 REMARK 465 PRO A 137 REMARK 465 SER A 138 REMARK 465 MET A 139 REMARK 465 ASP A 140 REMARK 465 GLY A 258 REMARK 465 ALA A 259 REMARK 465 GLU A 418 REMARK 465 GLY A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 MET B 25 REMARK 465 SER B 26 REMARK 465 LEU B 27 REMARK 465 THR B 28 REMARK 465 SER B 29 REMARK 465 THR B 30 REMARK 465 ALA B 31 REMARK 465 THR B 32 REMARK 465 ASP B 33 REMARK 465 SER B 34 REMARK 465 ASP B 123 REMARK 465 ALA B 124 REMARK 465 SER B 125 REMARK 465 GLN B 126 REMARK 465 GLY B 127 REMARK 465 ASP B 128 REMARK 465 LYS B 129 REMARK 465 ALA B 130 REMARK 465 SER B 131 REMARK 465 ALA B 132 REMARK 465 SER B 133 REMARK 465 ILE B 134 REMARK 465 ASP B 135 REMARK 465 ASN B 136 REMARK 465 PRO B 137 REMARK 465 SER B 138 REMARK 465 MET B 139 REMARK 465 ASP B 140 REMARK 465 GLY B 258 REMARK 465 ALA B 259 REMARK 465 GLY B 417 REMARK 465 GLU B 418 REMARK 465 GLY B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 SER A 262 OG REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 VAL A 349 CG1 CG2 REMARK 470 ARG A 350 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 351 CG OD1 OD2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 SER B 262 OG REMARK 470 GLU B 348 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 30.45 -99.89 REMARK 500 ALA B 230 28.35 -140.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 427 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 277 NE2 REMARK 620 2 ASP A 327 OD1 95.2 REMARK 620 3 HOH A 541 O 86.0 91.4 REMARK 620 4 HOH A 623 O 100.6 96.7 169.0 REMARK 620 5 HOH A 631 O 171.5 86.9 85.7 87.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 426 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 277 NE2 REMARK 620 2 ASP B 327 OD1 95.0 REMARK 620 3 HOH B 599 O 100.8 98.4 REMARK 620 4 HOH B 603 O 172.6 85.0 86.5 REMARK 620 5 HOH B 777 O 85.9 91.8 167.2 86.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 428 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 530 O REMARK 620 2 HOH B 604 O 85.1 REMARK 620 3 HOH B 771 O 85.4 169.6 REMARK 620 4 HOH B 772 O 169.7 95.5 94.7 REMARK 620 5 HOH B 773 O 83.8 88.1 95.2 85.9 REMARK 620 6 HOH B 774 O 101.6 91.7 85.9 88.7 174.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 427 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 428 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9626A RELATED DB: TARGETDB DBREF 3E2V A 28 418 UNP A6ZKP4 A6ZKP4_YEAS7 28 418 DBREF 3E2V B 28 418 UNP A6ZKP4 A6ZKP4_YEAS7 28 418 SEQADV 3E2V MET A 25 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V SER A 26 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V LEU A 27 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V GLY A 419 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS A 420 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS A 421 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS A 422 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS A 423 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS A 424 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS A 425 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V MET B 25 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V SER B 26 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V LEU B 27 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V GLY B 419 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS B 420 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS B 421 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS B 422 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS B 423 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS B 424 UNP A6ZKP4 EXPRESSION TAG SEQADV 3E2V HIS B 425 UNP A6ZKP4 EXPRESSION TAG SEQRES 1 A 401 MET SER LEU THR SER THR ALA THR ASP SER PRO LEU LYS SEQRES 2 A 401 TYR TYR ASP ILE GLY LEU ASN LEU THR ASP PRO MET PHE SEQRES 3 A 401 HIS GLY ILE TYR ASN GLY LYS GLN TYR HIS PRO ALA ASP SEQRES 4 A 401 TYR VAL LYS LEU LEU GLU ARG ALA ALA GLN ARG HIS VAL SEQRES 5 A 401 LYS ASN ALA LEU VAL THR GLY SER SER ILE ALA GLU SER SEQRES 6 A 401 GLN SER ALA ILE GLU LEU VAL SER SER VAL LYS ASP LEU SEQRES 7 A 401 SER PRO LEU LYS LEU TYR HIS THR ILE GLY VAL HIS PRO SEQRES 8 A 401 CYS CYS VAL ASN GLU PHE ALA ASP ALA SER GLN GLY ASP SEQRES 9 A 401 LYS ALA SER ALA SER ILE ASP ASN PRO SER MET ASP GLU SEQRES 10 A 401 ALA TYR ASN GLU SER LEU TYR ALA LYS VAL ILE SER ASN SEQRES 11 A 401 PRO SER PHE ALA GLN GLY LYS LEU LYS GLU LEU TYR ASP SEQRES 12 A 401 LEU MET ASN GLN GLN ALA LYS PRO HIS ASP THR SER PHE SEQRES 13 A 401 ARG SER ILE GLY GLU ILE GLY LEU ASP TYR ASP ARG PHE SEQRES 14 A 401 HIS TYR SER SER LYS GLU MET GLN LYS VAL PHE PHE GLU SEQRES 15 A 401 GLU GLN LEU LYS ILE SER CYS LEU ASN ASP LYS LEU SER SEQRES 16 A 401 SER TYR PRO LEU PHE LEU HIS MET ARG SER ALA CYS ASP SEQRES 17 A 401 ASP PHE VAL GLN ILE LEU GLU ARG PHE VAL VAL GLY PHE SEQRES 18 A 401 THR ASP GLU LYS ASP THR PHE GLN LEU GLN LYS LEU GLY SEQRES 19 A 401 ALA SER SER SER SER GLY PHE TYR LYS PHE HIS PRO ASP SEQRES 20 A 401 ARG LYS LEU VAL VAL HIS SER PHE THR GLY SER ALA ILE SEQRES 21 A 401 ASP LEU GLN LYS LEU LEU ASN LEU SER PRO ASN ILE PHE SEQRES 22 A 401 ILE GLY VAL ASN GLY CYS SER LEU ARG THR GLU GLU ASN SEQRES 23 A 401 LEU ALA VAL VAL LYS GLN ILE PRO THR GLU ARG LEU LEU SEQRES 24 A 401 LEU GLU THR ASP ALA PRO TRP CYS GLU ILE LYS ARG THR SEQRES 25 A 401 HIS ALA SER PHE GLN TYR LEU ALA LYS TYR GLN GLU VAL SEQRES 26 A 401 ARG ASP PHE GLU TYR PRO ALA PHE LYS SER VAL LYS LYS SEQRES 27 A 401 ASN LYS LEU ALA ASP LYS LEU ASN ALA GLU GLU LEU TYR SEQRES 28 A 401 MET VAL LYS GLY ARG ASN GLU PRO CYS ASN MET GLU GLN SEQRES 29 A 401 VAL ALA ILE VAL VAL SER GLU VAL LYS ASP VAL ASP LEU SEQRES 30 A 401 ALA THR LEU ILE ASP THR THR TRP LYS THR THR CYS LYS SEQRES 31 A 401 ILE PHE GLY GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 401 MET SER LEU THR SER THR ALA THR ASP SER PRO LEU LYS SEQRES 2 B 401 TYR TYR ASP ILE GLY LEU ASN LEU THR ASP PRO MET PHE SEQRES 3 B 401 HIS GLY ILE TYR ASN GLY LYS GLN TYR HIS PRO ALA ASP SEQRES 4 B 401 TYR VAL LYS LEU LEU GLU ARG ALA ALA GLN ARG HIS VAL SEQRES 5 B 401 LYS ASN ALA LEU VAL THR GLY SER SER ILE ALA GLU SER SEQRES 6 B 401 GLN SER ALA ILE GLU LEU VAL SER SER VAL LYS ASP LEU SEQRES 7 B 401 SER PRO LEU LYS LEU TYR HIS THR ILE GLY VAL HIS PRO SEQRES 8 B 401 CYS CYS VAL ASN GLU PHE ALA ASP ALA SER GLN GLY ASP SEQRES 9 B 401 LYS ALA SER ALA SER ILE ASP ASN PRO SER MET ASP GLU SEQRES 10 B 401 ALA TYR ASN GLU SER LEU TYR ALA LYS VAL ILE SER ASN SEQRES 11 B 401 PRO SER PHE ALA GLN GLY LYS LEU LYS GLU LEU TYR ASP SEQRES 12 B 401 LEU MET ASN GLN GLN ALA LYS PRO HIS ASP THR SER PHE SEQRES 13 B 401 ARG SER ILE GLY GLU ILE GLY LEU ASP TYR ASP ARG PHE SEQRES 14 B 401 HIS TYR SER SER LYS GLU MET GLN LYS VAL PHE PHE GLU SEQRES 15 B 401 GLU GLN LEU LYS ILE SER CYS LEU ASN ASP LYS LEU SER SEQRES 16 B 401 SER TYR PRO LEU PHE LEU HIS MET ARG SER ALA CYS ASP SEQRES 17 B 401 ASP PHE VAL GLN ILE LEU GLU ARG PHE VAL VAL GLY PHE SEQRES 18 B 401 THR ASP GLU LYS ASP THR PHE GLN LEU GLN LYS LEU GLY SEQRES 19 B 401 ALA SER SER SER SER GLY PHE TYR LYS PHE HIS PRO ASP SEQRES 20 B 401 ARG LYS LEU VAL VAL HIS SER PHE THR GLY SER ALA ILE SEQRES 21 B 401 ASP LEU GLN LYS LEU LEU ASN LEU SER PRO ASN ILE PHE SEQRES 22 B 401 ILE GLY VAL ASN GLY CYS SER LEU ARG THR GLU GLU ASN SEQRES 23 B 401 LEU ALA VAL VAL LYS GLN ILE PRO THR GLU ARG LEU LEU SEQRES 24 B 401 LEU GLU THR ASP ALA PRO TRP CYS GLU ILE LYS ARG THR SEQRES 25 B 401 HIS ALA SER PHE GLN TYR LEU ALA LYS TYR GLN GLU VAL SEQRES 26 B 401 ARG ASP PHE GLU TYR PRO ALA PHE LYS SER VAL LYS LYS SEQRES 27 B 401 ASN LYS LEU ALA ASP LYS LEU ASN ALA GLU GLU LEU TYR SEQRES 28 B 401 MET VAL LYS GLY ARG ASN GLU PRO CYS ASN MET GLU GLN SEQRES 29 B 401 VAL ALA ILE VAL VAL SER GLU VAL LYS ASP VAL ASP LEU SEQRES 30 B 401 ALA THR LEU ILE ASP THR THR TRP LYS THR THR CYS LYS SEQRES 31 B 401 ILE PHE GLY GLU GLY HIS HIS HIS HIS HIS HIS HET GOL A 1 6 HET GOL A 426 6 HET MG A 427 1 HET GOL B 1 6 HET MG B 426 1 HET GOL B 427 6 HET MG B 428 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *704(H2 O) HELIX 1 1 ASP A 47 HIS A 51 5 5 HELIX 2 2 ASP A 63 ARG A 74 1 12 HELIX 3 3 SER A 85 LYS A 100 1 16 HELIX 4 4 HIS A 114 ALA A 122 5 9 HELIX 5 5 GLU A 141 ASN A 154 1 14 HELIX 6 6 PRO A 155 LYS A 174 1 20 HELIX 7 7 SER A 197 SER A 212 1 16 HELIX 8 8 ASN A 215 SER A 220 1 6 HELIX 9 9 ALA A 230 GLY A 244 1 15 HELIX 10 10 GLN A 253 LEU A 257 5 5 HELIX 11 11 SER A 282 SER A 293 1 12 HELIX 12 12 ASN A 301 ARG A 306 5 6 HELIX 13 13 THR A 307 GLN A 316 1 10 HELIX 14 14 ILE A 317 GLU A 320 5 4 HELIX 15 15 SER A 339 ARG A 350 1 12 HELIX 16 16 LYS A 361 LEU A 369 5 9 HELIX 17 17 GLU A 382 CYS A 384 5 3 HELIX 18 18 ASN A 385 ASP A 398 1 14 HELIX 19 19 ASP A 400 GLY A 417 1 18 HELIX 20 20 ASP B 47 HIS B 51 5 5 HELIX 21 21 ASP B 63 ARG B 74 1 12 HELIX 22 22 SER B 85 LYS B 100 1 16 HELIX 23 23 HIS B 114 ALA B 122 5 9 HELIX 24 24 GLU B 141 ASN B 154 1 14 HELIX 25 25 PRO B 155 LYS B 174 1 20 HELIX 26 26 SER B 197 SER B 212 1 16 HELIX 27 27 ASN B 215 SER B 220 1 6 HELIX 28 28 ALA B 230 GLY B 244 1 15 HELIX 29 29 GLN B 253 LEU B 257 5 5 HELIX 30 30 SER B 282 SER B 293 1 12 HELIX 31 31 ASN B 301 ARG B 306 5 6 HELIX 32 32 THR B 307 GLN B 316 1 10 HELIX 33 33 ILE B 317 GLU B 320 5 4 HELIX 34 34 SER B 339 ARG B 350 1 12 HELIX 35 35 LYS B 361 LEU B 369 5 9 HELIX 36 36 GLU B 382 CYS B 384 5 3 HELIX 37 37 ASN B 385 ASP B 398 1 14 HELIX 38 38 ASP B 400 PHE B 416 1 17 SHEET 1 A 8 TYR A 38 LEU A 43 0 SHEET 2 A 8 VAL A 76 VAL A 81 1 O LEU A 80 N ASP A 40 SHEET 3 A 8 LYS A 106 ILE A 111 1 O TYR A 108 N VAL A 81 SHEET 4 A 8 PHE A 180 ASP A 189 1 O ARG A 181 N HIS A 109 SHEET 5 A 8 LEU A 223 ARG A 228 1 O PHE A 224 N ILE A 183 SHEET 6 A 8 LEU A 274 VAL A 276 1 O VAL A 275 N LEU A 225 SHEET 7 A 8 ILE A 296 VAL A 300 1 O GLY A 299 N VAL A 276 SHEET 8 A 8 LEU A 322 LEU A 324 1 O LEU A 323 N VAL A 300 SHEET 1 B 2 ILE A 53 TYR A 54 0 SHEET 2 B 2 LYS A 57 GLN A 58 -1 O LYS A 57 N TYR A 54 SHEET 1 C 2 PHE A 245 THR A 246 0 SHEET 2 C 2 PHE A 265 TYR A 266 -1 O TYR A 266 N PHE A 245 SHEET 1 D 2 LYS A 358 VAL A 360 0 SHEET 2 D 2 TYR A 375 VAL A 377 1 O MET A 376 N LYS A 358 SHEET 1 E 8 TYR B 38 LEU B 43 0 SHEET 2 E 8 VAL B 76 VAL B 81 1 O LEU B 80 N ASP B 40 SHEET 3 E 8 LYS B 106 ILE B 111 1 O TYR B 108 N VAL B 81 SHEET 4 E 8 PHE B 180 ASP B 189 1 O ARG B 181 N HIS B 109 SHEET 5 E 8 LEU B 223 ARG B 228 1 O PHE B 224 N ILE B 183 SHEET 6 E 8 LEU B 274 HIS B 277 1 O VAL B 275 N LEU B 225 SHEET 7 E 8 ILE B 296 VAL B 300 1 O GLY B 299 N VAL B 276 SHEET 8 E 8 LEU B 322 LEU B 324 1 O LEU B 323 N VAL B 300 SHEET 1 F 2 ILE B 53 TYR B 54 0 SHEET 2 F 2 LYS B 57 GLN B 58 -1 O LYS B 57 N TYR B 54 SHEET 1 G 2 PHE B 245 THR B 246 0 SHEET 2 G 2 PHE B 265 TYR B 266 -1 O TYR B 266 N PHE B 245 SHEET 1 H 2 LYS B 358 VAL B 360 0 SHEET 2 H 2 TYR B 375 VAL B 377 1 O MET B 376 N LYS B 358 SSBOND 1 CYS A 116 CYS A 117 1555 1555 2.09 SSBOND 2 CYS A 303 CYS A 331 1555 1555 2.07 SSBOND 3 CYS B 116 CYS B 117 1555 1555 2.09 SSBOND 4 CYS B 303 CYS B 331 1555 1555 2.06 LINK NE2 HIS A 277 MG MG A 427 1555 1555 2.21 LINK OD1 ASP A 327 MG MG A 427 1555 1555 2.25 LINK MG MG A 427 O HOH A 541 1555 1555 2.06 LINK MG MG A 427 O HOH A 623 1555 1555 2.01 LINK MG MG A 427 O HOH A 631 1555 1555 2.06 LINK NE2 HIS B 277 MG MG B 426 1555 1555 2.19 LINK OD1 ASP B 327 MG MG B 426 1555 1555 2.21 LINK MG MG B 426 O HOH B 599 1555 1555 1.88 LINK MG MG B 426 O HOH B 603 1555 1555 2.13 LINK MG MG B 426 O HOH B 777 1555 1555 1.94 LINK MG MG B 428 O HOH B 530 1555 1555 2.25 LINK MG MG B 428 O HOH B 604 1555 1555 2.09 LINK MG MG B 428 O HOH B 771 1555 1555 2.11 LINK MG MG B 428 O HOH B 772 1555 1555 2.06 LINK MG MG B 428 O HOH B 773 1555 1555 2.03 LINK MG MG B 428 O HOH B 774 1555 1555 2.06 CISPEP 1 GLY A 184 GLU A 185 0 -2.14 CISPEP 2 GLY A 184 GLU A 185 0 -1.01 CISPEP 3 ALA A 328 PRO A 329 0 10.58 CISPEP 4 TYR A 354 PRO A 355 0 -8.61 CISPEP 5 GLY B 184 GLU B 185 0 -1.38 CISPEP 6 GLY B 184 GLU B 185 0 -0.61 CISPEP 7 ALA B 328 PRO B 329 0 11.20 CISPEP 8 TYR B 354 PRO B 355 0 -4.26 SITE 1 AC1 8 CYS A 213 SER A 260 SER A 261 GLY A 264 SITE 2 AC1 8 PHE A 265 TYR A 266 HOH A 488 HOH A 627 SITE 1 AC2 9 GLU A 332 SER A 359 MET A 376 VAL A 377 SITE 2 AC2 9 GLY A 379 ARG A 380 ASN A 385 HOH A 509 SITE 3 AC2 9 HOH A 539 SITE 1 AC3 6 HIS A 277 ASP A 327 HOH A 454 HOH A 541 SITE 2 AC3 6 HOH A 623 HOH A 631 SITE 1 AC4 8 CYS B 213 SER B 260 SER B 261 GLY B 264 SITE 2 AC4 8 PHE B 265 TYR B 266 HOH B 487 HOH B 718 SITE 1 AC5 7 HIS B 277 SER B 278 ASP B 327 HOH B 435 SITE 2 AC5 7 HOH B 599 HOH B 603 HOH B 777 SITE 1 AC6 9 GLU B 332 SER B 359 MET B 376 VAL B 377 SITE 2 AC6 9 GLY B 379 ARG B 380 ASN B 385 HOH B 510 SITE 3 AC6 9 HOH B 611 SITE 1 AC7 6 HOH B 530 HOH B 604 HOH B 771 HOH B 772 SITE 2 AC7 6 HOH B 773 HOH B 774 CRYST1 62.532 55.007 115.260 90.00 95.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015992 0.000000 0.001638 0.00000 SCALE2 0.000000 0.018179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008721 0.00000 CONECT 647 653 CONECT 653 647 CONECT 1810 5852 CONECT 2000 2225 CONECT 2192 5852 CONECT 2225 2000 CONECT 3557 3563 CONECT 3563 3557 CONECT 4718 5859 CONECT 4911 5136 CONECT 5103 5859 CONECT 5136 4911 CONECT 5840 5841 5842 CONECT 5841 5840 CONECT 5842 5840 5843 5844 CONECT 5843 5842 CONECT 5844 5842 5845 CONECT 5845 5844 CONECT 5846 5847 5848 CONECT 5847 5846 CONECT 5848 5846 5849 5850 CONECT 5849 5848 CONECT 5850 5848 5851 CONECT 5851 5850 CONECT 5852 1810 2192 5980 6062 CONECT 5852 6070 CONECT 5853 5854 5855 CONECT 5854 5853 CONECT 5855 5853 5856 5857 CONECT 5856 5855 CONECT 5857 5855 5858 CONECT 5858 5857 CONECT 5859 4718 5103 6385 6389 CONECT 5859 6563 CONECT 5860 5861 5862 CONECT 5861 5860 CONECT 5862 5860 5863 5864 CONECT 5863 5862 CONECT 5864 5862 5865 CONECT 5865 5864 CONECT 5866 6316 6390 6557 6558 CONECT 5866 6559 6560 CONECT 5980 5852 CONECT 6062 5852 CONECT 6070 5852 CONECT 6316 5866 CONECT 6385 5859 CONECT 6389 5859 CONECT 6390 5866 CONECT 6557 5866 CONECT 6558 5866 CONECT 6559 5866 CONECT 6560 5866 CONECT 6563 5859 MASTER 427 0 7 38 28 0 16 6 6524 2 54 62 END