HEADER TRANSCRIPTION 12-AUG-08 3E4U TITLE CRYSTAL STRUCTURE OF THE WILD-TYPE HUMAN BCL6 BTB/POZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: BTB DOMAIN; COMPND 5 SYNONYM: BCL-6, ZINC FINGER PROTEIN 51, LAZ-3 PROTEIN, BCL-5, ZINC COMPND 6 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS BTB/POZ PROTEIN INTERACTION DOMAIN, ACTIVATOR, DNA-BINDING, METAL- KEYWDS 2 BINDING, NUCLEUS, PHOSPHOPROTEIN, PROTO-ONCOGENE, REPRESSOR, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR M.A.STEAD,G.O.ROSBROOK,J.M.HADDEN,C.H.TRINH,S.B.CARR,S.C.WRIGHT REVDAT 3 21-FEB-24 3E4U 1 SEQADV REVDAT 2 28-MAR-12 3E4U 1 JRNL VERSN REVDAT 1 09-DEC-08 3E4U 0 JRNL AUTH M.A.STEAD,G.O.ROSBROOK,J.M.HADDEN,C.H.TRINH,S.B.CARR, JRNL AUTH 2 S.C.WRIGHT JRNL TITL STRUCTURE OF THE WILD-TYPE HUMAN BCL6 POZ DOMAIN. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 64 1101 2008 JRNL REFN ESSN 1744-3091 JRNL PMID 19052359 JRNL DOI 10.1107/S1744309108036063 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 36147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1887 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1520 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5571 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.16000 REMARK 3 B22 (A**2) : 11.16000 REMARK 3 B33 (A**2) : -22.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5631 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3789 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7569 ; 1.294 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9201 ; 4.237 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 677 ; 6.218 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;32.612 ;23.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1059 ;15.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;16.639 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 923 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6041 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1176 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3456 ; 0.591 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1403 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5593 ; 1.051 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2175 ; 1.547 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1976 ; 2.242 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3E4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 36.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.15700 REMARK 200 R SYM FOR SHELL (I) : 0.15700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M SODIUM NITRATE, 100 MM SODIUM REMARK 280 ACETATE (PH 4.5), 40 MM SPERMIDINE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.98067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.99033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 SER A 39 REMARK 465 ARG A 40 REMARK 465 PRO A 76 REMARK 465 GLU A 129 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 ASP B 6 REMARK 465 ARG B 40 REMARK 465 ASP B 75 REMARK 465 PRO B 76 REMARK 465 GLY C 0 REMARK 465 PRO C 1 REMARK 465 LEU C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 ALA C 5 REMARK 465 ASP C 6 REMARK 465 SER C 39 REMARK 465 ARG C 40 REMARK 465 PRO C 76 REMARK 465 GLU C 129 REMARK 465 GLY D 0 REMARK 465 PRO D 1 REMARK 465 LEU D 2 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 ALA D 5 REMARK 465 ASP D 6 REMARK 465 ARG D 40 REMARK 465 ASP D 75 REMARK 465 PRO D 76 REMARK 465 SER D 128 REMARK 465 GLU D 129 REMARK 465 GLY E 0 REMARK 465 PRO E 1 REMARK 465 LEU E 2 REMARK 465 GLY E 3 REMARK 465 SER E 4 REMARK 465 ALA E 5 REMARK 465 ASP E 6 REMARK 465 SER E 39 REMARK 465 ARG E 40 REMARK 465 ASP E 63 REMARK 465 GLN E 64 REMARK 465 LEU E 65 REMARK 465 LYS E 66 REMARK 465 CYS E 67 REMARK 465 GLU E 77 REMARK 465 PRO E 80 REMARK 465 SER E 128 REMARK 465 GLU E 129 REMARK 465 GLY F 0 REMARK 465 PRO F 1 REMARK 465 LEU F 2 REMARK 465 GLY F 3 REMARK 465 SER F 4 REMARK 465 ALA F 5 REMARK 465 ASP F 6 REMARK 465 SER F 39 REMARK 465 GLN F 64 REMARK 465 LEU F 65 REMARK 465 LYS F 66 REMARK 465 CYS F 67 REMARK 465 ASP F 75 REMARK 465 PRO F 76 REMARK 465 GLU F 77 REMARK 465 ILE F 78 REMARK 465 ASN F 79 REMARK 465 PRO F 80 REMARK 465 SER F 128 REMARK 465 GLU F 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE E 124 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE F 124 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 93 4.04 57.63 REMARK 500 CYS B 8 76.61 -156.32 REMARK 500 ASN B 68 56.38 -111.98 REMARK 500 LYS D 66 18.24 -145.28 REMARK 500 SER E 93 -0.95 78.95 REMARK 500 LEU F 112 0.16 -69.20 REMARK 500 MET F 114 79.77 -101.65 REMARK 500 LYS F 126 48.80 -96.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 3E4U A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 3E4U B 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 3E4U C 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 3E4U D 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 3E4U E 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 3E4U F 5 129 UNP P41182 BCL6_HUMAN 5 129 SEQADV 3E4U GLY A 0 UNP P41182 EXPRESSION TAG SEQADV 3E4U PRO A 1 UNP P41182 EXPRESSION TAG SEQADV 3E4U LEU A 2 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY A 3 UNP P41182 EXPRESSION TAG SEQADV 3E4U SER A 4 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY B 0 UNP P41182 EXPRESSION TAG SEQADV 3E4U PRO B 1 UNP P41182 EXPRESSION TAG SEQADV 3E4U LEU B 2 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY B 3 UNP P41182 EXPRESSION TAG SEQADV 3E4U SER B 4 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY C 0 UNP P41182 EXPRESSION TAG SEQADV 3E4U PRO C 1 UNP P41182 EXPRESSION TAG SEQADV 3E4U LEU C 2 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY C 3 UNP P41182 EXPRESSION TAG SEQADV 3E4U SER C 4 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY D 0 UNP P41182 EXPRESSION TAG SEQADV 3E4U PRO D 1 UNP P41182 EXPRESSION TAG SEQADV 3E4U LEU D 2 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY D 3 UNP P41182 EXPRESSION TAG SEQADV 3E4U SER D 4 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY E 0 UNP P41182 EXPRESSION TAG SEQADV 3E4U PRO E 1 UNP P41182 EXPRESSION TAG SEQADV 3E4U LEU E 2 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY E 3 UNP P41182 EXPRESSION TAG SEQADV 3E4U SER E 4 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY F 0 UNP P41182 EXPRESSION TAG SEQADV 3E4U PRO F 1 UNP P41182 EXPRESSION TAG SEQADV 3E4U LEU F 2 UNP P41182 EXPRESSION TAG SEQADV 3E4U GLY F 3 UNP P41182 EXPRESSION TAG SEQADV 3E4U SER F 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 130 GLY PRO LEU GLY SER ALA ASP SER CYS ILE GLN PHE THR SEQRES 2 A 130 ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU SEQRES 3 A 130 ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SEQRES 4 A 130 SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET SEQRES 5 A 130 ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN SEQRES 6 A 130 LEU LYS CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU SEQRES 7 A 130 ILE ASN PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET SEQRES 8 A 130 TYR THR SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET SEQRES 9 A 130 ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU HIS SEQRES 10 A 130 VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 130 GLY PRO LEU GLY SER ALA ASP SER CYS ILE GLN PHE THR SEQRES 2 B 130 ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU SEQRES 3 B 130 ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SEQRES 4 B 130 SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET SEQRES 5 B 130 ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN SEQRES 6 B 130 LEU LYS CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU SEQRES 7 B 130 ILE ASN PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET SEQRES 8 B 130 TYR THR SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET SEQRES 9 B 130 ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU HIS SEQRES 10 B 130 VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 C 130 GLY PRO LEU GLY SER ALA ASP SER CYS ILE GLN PHE THR SEQRES 2 C 130 ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU SEQRES 3 C 130 ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SEQRES 4 C 130 SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET SEQRES 5 C 130 ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN SEQRES 6 C 130 LEU LYS CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU SEQRES 7 C 130 ILE ASN PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET SEQRES 8 C 130 TYR THR SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET SEQRES 9 C 130 ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU HIS SEQRES 10 C 130 VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 D 130 GLY PRO LEU GLY SER ALA ASP SER CYS ILE GLN PHE THR SEQRES 2 D 130 ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU SEQRES 3 D 130 ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SEQRES 4 D 130 SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET SEQRES 5 D 130 ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN SEQRES 6 D 130 LEU LYS CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU SEQRES 7 D 130 ILE ASN PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET SEQRES 8 D 130 TYR THR SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET SEQRES 9 D 130 ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU HIS SEQRES 10 D 130 VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 E 130 GLY PRO LEU GLY SER ALA ASP SER CYS ILE GLN PHE THR SEQRES 2 E 130 ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU SEQRES 3 E 130 ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SEQRES 4 E 130 SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET SEQRES 5 E 130 ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN SEQRES 6 E 130 LEU LYS CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU SEQRES 7 E 130 ILE ASN PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET SEQRES 8 E 130 TYR THR SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET SEQRES 9 E 130 ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU HIS SEQRES 10 E 130 VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 F 130 GLY PRO LEU GLY SER ALA ASP SER CYS ILE GLN PHE THR SEQRES 2 F 130 ARG HIS ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU SEQRES 3 F 130 ARG SER ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SEQRES 4 F 130 SER ARG GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET SEQRES 5 F 130 ALA CYS SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN SEQRES 6 F 130 LEU LYS CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU SEQRES 7 F 130 ILE ASN PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET SEQRES 8 F 130 TYR THR SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET SEQRES 9 F 130 ALA VAL MET ALA THR ALA MET TYR LEU GLN MET GLU HIS SEQRES 10 F 130 VAL VAL ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU FORMUL 7 HOH *256(H2 O) HELIX 1 1 ARG A 13 ASP A 29 1 17 HELIX 2 2 HIS A 46 SER A 54 1 9 HELIX 3 3 SER A 54 THR A 62 1 9 HELIX 4 4 ASN A 79 SER A 93 1 15 HELIX 5 5 ASN A 101 GLN A 113 1 13 HELIX 6 6 MET A 114 ALA A 127 1 14 HELIX 7 7 ARG B 13 ASP B 29 1 17 HELIX 8 8 HIS B 46 SER B 54 1 9 HELIX 9 9 SER B 54 THR B 62 1 9 HELIX 10 10 ASN B 79 SER B 93 1 15 HELIX 11 11 ARG B 98 LEU B 112 1 15 HELIX 12 12 GLU B 115 GLU B 129 1 15 HELIX 13 13 ARG C 13 ASP C 29 1 17 HELIX 14 14 HIS C 46 SER C 54 1 9 HELIX 15 15 SER C 54 THR C 62 1 9 HELIX 16 16 ASN C 79 SER C 93 1 15 HELIX 17 17 ASN C 101 LEU C 112 1 12 HELIX 18 18 MET C 114 ALA C 127 1 14 HELIX 19 19 ARG D 13 ARG D 28 1 16 HELIX 20 20 HIS D 46 SER D 54 1 9 HELIX 21 21 SER D 54 THR D 62 1 9 HELIX 22 22 ASN D 79 SER D 93 1 15 HELIX 23 23 ASN D 101 LEU D 112 1 12 HELIX 24 24 MET D 114 ALA D 127 1 14 HELIX 25 25 ARG E 13 ARG E 28 1 16 HELIX 26 26 HIS E 46 SER E 54 1 9 HELIX 27 27 SER E 54 THR E 62 1 9 HELIX 28 28 GLU E 81 TYR E 91 1 11 HELIX 29 29 ARG E 98 GLY E 100 5 3 HELIX 30 30 ASN E 101 GLN E 113 1 13 HELIX 31 31 MET E 114 LYS E 126 1 13 HELIX 32 32 ARG F 13 ARG F 28 1 16 HELIX 33 33 HIS F 46 SER F 54 1 9 HELIX 34 34 SER F 54 ASP F 63 1 10 HELIX 35 35 GLU F 81 SER F 93 1 13 HELIX 36 36 ARG F 98 LEU F 112 1 15 HELIX 37 37 MET F 114 LYS F 126 1 13 SHEET 1 A 3 PHE A 43 ALA A 45 0 SHEET 2 A 3 VAL A 34 VAL A 37 -1 N ILE A 36 O PHE A 43 SHEET 3 A 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SHEET 1 B 2 ARG A 94 LEU A 95 0 SHEET 2 B 2 ILE B 9 GLN B 10 -1 O ILE B 9 N LEU A 95 SHEET 1 C 3 GLN B 42 ALA B 45 0 SHEET 2 C 3 VAL B 34 VAL B 37 -1 N ILE B 36 O PHE B 43 SHEET 3 C 3 VAL B 71 ASN B 73 1 O ILE B 72 N VAL B 35 SHEET 1 D 2 CYS C 8 GLN C 10 0 SHEET 2 D 2 ARG D 94 ASN D 96 -1 N LEU D 95 O ILE C 9 SHEET 1 E 3 PHE C 43 ALA C 45 0 SHEET 2 E 3 VAL C 34 VAL C 37 -1 N ILE C 36 O PHE C 43 SHEET 3 E 3 VAL C 71 ASN C 73 1 O ILE C 72 N VAL C 37 SHEET 1 F 2 ARG C 94 LEU C 95 0 SHEET 2 F 2 ILE D 9 GLN D 10 -1 O ILE D 9 N LEU C 95 SHEET 1 G 3 GLN D 42 ALA D 45 0 SHEET 2 G 3 VAL D 34 VAL D 37 -1 N ILE D 36 O PHE D 43 SHEET 3 G 3 VAL D 71 ASN D 73 1 O ILE D 72 N VAL D 37 SHEET 1 H 2 CYS E 8 GLN E 10 0 SHEET 2 H 2 ARG F 94 ASN F 96 -1 O LEU F 95 N ILE E 9 SHEET 1 I 3 PHE E 43 ALA E 45 0 SHEET 2 I 3 VAL E 34 VAL E 37 -1 N ILE E 36 O PHE E 43 SHEET 3 I 3 VAL E 71 ASN E 73 1 O ILE E 72 N VAL E 35 SHEET 1 J 2 ARG E 94 ASN E 96 0 SHEET 2 J 2 CYS F 8 GLN F 10 -1 O ILE F 9 N LEU E 95 SHEET 1 K 3 GLN F 42 ALA F 45 0 SHEET 2 K 3 VAL F 34 VAL F 37 -1 N ILE F 36 O PHE F 43 SHEET 3 K 3 VAL F 71 ASN F 73 1 O ILE F 72 N VAL F 37 CISPEP 1 CYS B 67 ASN B 68 0 3.72 CRYST1 59.209 59.209 158.971 90.00 90.00 120.00 P 32 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016889 0.009751 0.000000 0.00000 SCALE2 0.000000 0.019502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006290 0.00000