HEADER FLAVOPROTEIN 12-AUG-08 3E4V TITLE CRYSTAL STRUCTURE OF NADH:FMN OXIDOREDUCTASE LIKE PROTEIN IN COMPLEX TITLE 2 WITH FMN (YP_544701.1) FROM METHYLOBACILLUS FLAGELLATUS KT AT 1.40 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH:FMN OXIDOREDUCTASE LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS KT; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 GENE: YP_544701.1, MFLA_0590; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_544701.1, NADH:FMN OXIDOREDUCTASE LIKE PROTEIN IN COMPLEX WITH KEYWDS 2 FMN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION, KEYWDS 4 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3E4V 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3E4V 1 REMARK LINK REVDAT 4 25-OCT-17 3E4V 1 REMARK REVDAT 3 13-JUL-11 3E4V 1 VERSN REVDAT 2 24-FEB-09 3E4V 1 VERSN REVDAT 1 02-SEP-08 3E4V 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NADH:FMN OXIDOREDUCTASE LIKE PROTEIN IN JRNL TITL 2 COMPLEX WITH FMN (YP_544701.1) FROM METHYLOBACILLUS JRNL TITL 3 FLAGELLATUS KT AT 1.40 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 63977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3233 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3135 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2092 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4299 ; 1.531 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5076 ; 1.462 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 6.403 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;34.818 ;23.379 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;10.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3562 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 633 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1894 ; 2.340 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 762 ; 1.462 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3082 ; 3.194 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1241 ; 4.341 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1217 ; 5.593 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5227 ; 2.147 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 379 ; 8.402 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5141 ; 3.726 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 181 4 REMARK 3 1 B 3 B 181 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2381 ; 0.260 ; 0.500 REMARK 3 MEDIUM THERMAL 1 B (A**2): 2381 ; 0.990 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 (3). FLAVIN MONONUCLEOTIDE (FMN) MOLECULES WERE COCRYSTALLIZED REMARK 3 AND THE ELECTRON DENSITIES OF FMN WERE CONCLUSIVE. REMARK 3 (4). SODIUM (NA) AND ACETATE (ACT) IONS, AND PEG 400 FRAGMENTS REMARK 3 (PEG) FROM CRYSTALLIZATION CONDITIONS WERE MODELED. REMARK 4 REMARK 4 3E4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FORHORIZONTAL REMARK 200 AND VERTICAL FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64048 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.683 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 30.0% REMARK 280 POLYETHYLENE GLYCOL 400, 0.1M SODIUM ACETATE PH 4.5, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.08500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.08500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 HIS A 182 REMARK 465 LEU A 183 REMARK 465 MSE A 184 REMARK 465 GLY A 185 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 HIS B 182 REMARK 465 LEU B 183 REMARK 465 MSE B 184 REMARK 465 GLY B 185 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 132 CD NE CZ NH1 NH2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 ARG B 132 CD NE CZ NH1 NH2 REMARK 470 LYS B 151 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 91 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 O REMARK 620 2 HOH A 376 O 76.8 REMARK 620 3 HOH A 379 O 74.8 86.7 REMARK 620 4 HIS B 39 O 92.0 156.1 110.9 REMARK 620 5 HOH B 351 O 152.2 119.5 83.4 79.7 REMARK 620 6 HOH B 423 O 105.1 73.3 159.3 89.8 101.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 110 OD2 REMARK 620 2 HOH B 332 O 55.9 REMARK 620 3 HOH B 436 O 84.1 127.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375043 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3E4V A 1 185 UNP Q1H3S7 Q1H3S7_METFK 1 185 DBREF 3E4V B 1 185 UNP Q1H3S7 Q1H3S7_METFK 1 185 SEQADV 3E4V GLY A 0 UNP Q1H3S7 EXPRESSION TAG SEQADV 3E4V GLY B 0 UNP Q1H3S7 EXPRESSION TAG SEQRES 1 A 186 GLY MSE ARG ASN GLU LEU PRO PRO GLU ASN ALA TYR ARG SEQRES 2 A 186 ILE LEU GLU SER GLY PRO ILE VAL LEU VAL SER THR ARG SEQRES 3 A 186 GLY ALA ASP GLY ARG ALA ASN LEU MSE THR MSE GLY PHE SEQRES 4 A 186 HIS MSE MSE MSE GLN HIS GLU PRO PRO LEU VAL GLY ALA SEQRES 5 A 186 ILE ILE GLY PRO TRP ASP TYR SER HIS GLN ALA LEU SER SEQRES 6 A 186 GLU THR GLY GLU CYS VAL LEU ALA VAL PRO THR VAL ASP SEQRES 7 A 186 LEU ALA GLU THR VAL VAL ASP ILE GLY ASN CYS SER GLY SEQRES 8 A 186 ASP ALA LEU ASP LYS PHE GLY HIS PHE GLY LEU THR PRO SEQRES 9 A 186 VAL PRO ALA GLN THR VAL ASP ALA PRO LEU VAL ARG GLN SEQRES 10 A 186 CYS TRP ALA ASN LEU GLU CYS ARG VAL VAL ASP ASP GLY SEQRES 11 A 186 TRP ALA ARG ARG TYR ASN LEU TRP VAL LEU GLU VAL GLN SEQRES 12 A 186 ARG ILE TRP ILE ASP THR ALA ARG LYS GLU THR ARG LEU SEQRES 13 A 186 ILE HIS HIS GLN GLY ASP GLY ARG PHE SER VAL ASP GLY SEQRES 14 A 186 ASP THR LEU ASP LEU GLY GLU ARG MSE THR LYS TRP ARG SEQRES 15 A 186 HIS LEU MSE GLY SEQRES 1 B 186 GLY MSE ARG ASN GLU LEU PRO PRO GLU ASN ALA TYR ARG SEQRES 2 B 186 ILE LEU GLU SER GLY PRO ILE VAL LEU VAL SER THR ARG SEQRES 3 B 186 GLY ALA ASP GLY ARG ALA ASN LEU MSE THR MSE GLY PHE SEQRES 4 B 186 HIS MSE MSE MSE GLN HIS GLU PRO PRO LEU VAL GLY ALA SEQRES 5 B 186 ILE ILE GLY PRO TRP ASP TYR SER HIS GLN ALA LEU SER SEQRES 6 B 186 GLU THR GLY GLU CYS VAL LEU ALA VAL PRO THR VAL ASP SEQRES 7 B 186 LEU ALA GLU THR VAL VAL ASP ILE GLY ASN CYS SER GLY SEQRES 8 B 186 ASP ALA LEU ASP LYS PHE GLY HIS PHE GLY LEU THR PRO SEQRES 9 B 186 VAL PRO ALA GLN THR VAL ASP ALA PRO LEU VAL ARG GLN SEQRES 10 B 186 CYS TRP ALA ASN LEU GLU CYS ARG VAL VAL ASP ASP GLY SEQRES 11 B 186 TRP ALA ARG ARG TYR ASN LEU TRP VAL LEU GLU VAL GLN SEQRES 12 B 186 ARG ILE TRP ILE ASP THR ALA ARG LYS GLU THR ARG LEU SEQRES 13 B 186 ILE HIS HIS GLN GLY ASP GLY ARG PHE SER VAL ASP GLY SEQRES 14 B 186 ASP THR LEU ASP LEU GLY GLU ARG MSE THR LYS TRP ARG SEQRES 15 B 186 HIS LEU MSE GLY MODRES 3E4V MSE A 34 MET SELENOMETHIONINE MODRES 3E4V MSE A 36 MET SELENOMETHIONINE MODRES 3E4V MSE A 40 MET SELENOMETHIONINE MODRES 3E4V MSE A 41 MET SELENOMETHIONINE MODRES 3E4V MSE A 42 MET SELENOMETHIONINE MODRES 3E4V MSE A 177 MET SELENOMETHIONINE MODRES 3E4V MSE B 34 MET SELENOMETHIONINE MODRES 3E4V MSE B 36 MET SELENOMETHIONINE MODRES 3E4V MSE B 40 MET SELENOMETHIONINE MODRES 3E4V MSE B 41 MET SELENOMETHIONINE MODRES 3E4V MSE B 42 MET SELENOMETHIONINE MODRES 3E4V MSE B 177 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 36 8 HET MSE A 40 16 HET MSE A 41 8 HET MSE A 42 8 HET MSE A 177 8 HET MSE B 34 8 HET MSE B 36 8 HET MSE B 40 16 HET MSE B 41 8 HET MSE B 42 8 HET MSE B 177 8 HET FMN A 300 31 HET NA A 301 1 HET ACT A 302 4 HET GOL A 303 6 HET GOL A 304 6 HET PEG A 305 7 HET FMN B 300 31 HET NA B 301 1 HET GOL B 302 6 HET GOL B 303 6 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 NA 2(NA 1+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 GOL 4(C3 H8 O3) FORMUL 8 PEG C4 H10 O3 FORMUL 13 HOH *373(H2 O) HELIX 1 1 PRO A 6 ASN A 9 5 4 HELIX 2 2 ALA A 10 GLU A 15 1 6 HELIX 3 3 TYR A 58 GLY A 67 1 10 HELIX 4 4 THR A 75 ASP A 77 5 3 HELIX 5 5 LEU A 78 GLY A 86 1 9 HELIX 6 6 ASP A 94 GLY A 100 1 7 HELIX 7 7 TRP A 130 ASN A 135 1 6 HELIX 8 8 GLY A 174 MSE A 177 5 4 HELIX 9 9 PRO B 6 GLU B 8 5 3 HELIX 10 10 ASN B 9 GLU B 15 1 7 HELIX 11 11 TYR B 58 GLY B 67 1 10 HELIX 12 12 THR B 75 ASP B 77 5 3 HELIX 13 13 LEU B 78 GLY B 86 1 9 HELIX 14 14 ASP B 94 GLY B 100 1 7 HELIX 15 15 TRP B 130 ASN B 135 1 6 HELIX 16 16 GLY B 174 MSE B 177 5 4 SHEET 1 A 6 GLU A 4 LEU A 5 0 SHEET 2 A 6 LEU A 136 ILE A 146 -1 O ILE A 144 N LEU A 5 SHEET 3 A 6 ALA A 119 ASP A 127 -1 N GLU A 122 O GLN A 142 SHEET 4 A 6 GLU A 68 VAL A 73 -1 N VAL A 73 O ALA A 119 SHEET 5 A 6 VAL A 20 ARG A 25 -1 N SER A 23 O VAL A 70 SHEET 6 A 6 ALA A 31 MSE A 36 -1 O MSE A 36 N VAL A 20 SHEET 1 B 4 GLU A 4 LEU A 5 0 SHEET 2 B 4 LEU A 136 ILE A 146 -1 O ILE A 144 N LEU A 5 SHEET 3 B 4 LEU A 48 ILE A 52 -1 N VAL A 49 O LEU A 139 SHEET 4 B 4 HIS A 39 GLN A 43 -1 N MSE A 42 O LEU A 48 SHEET 1 C 2 PRO A 103 VAL A 104 0 SHEET 2 C 2 LEU A 113 VAL A 114 -1 O LEU A 113 N VAL A 104 SHEET 1 D 4 ILE A 156 HIS A 158 0 SHEET 2 D 4 ARG A 163 ASP A 172 -1 O SER A 165 N HIS A 157 SHEET 3 D 4 ARG B 163 ASP B 172 -1 O PHE B 164 N LEU A 171 SHEET 4 D 4 ILE B 156 GLY B 160 -1 N GLN B 159 O ARG B 163 SHEET 1 E 6 GLU B 4 LEU B 5 0 SHEET 2 E 6 LEU B 136 ILE B 146 -1 O ILE B 144 N LEU B 5 SHEET 3 E 6 ALA B 119 ASP B 127 -1 N GLU B 122 O GLN B 142 SHEET 4 E 6 GLU B 68 VAL B 73 -1 N VAL B 73 O ALA B 119 SHEET 5 E 6 VAL B 20 ARG B 25 -1 N SER B 23 O VAL B 70 SHEET 6 E 6 ALA B 31 MSE B 36 -1 O MSE B 36 N VAL B 20 SHEET 1 F 4 GLU B 4 LEU B 5 0 SHEET 2 F 4 LEU B 136 ILE B 146 -1 O ILE B 144 N LEU B 5 SHEET 3 F 4 LEU B 48 ILE B 52 -1 N VAL B 49 O LEU B 139 SHEET 4 F 4 HIS B 39 GLN B 43 -1 N MSE B 42 O LEU B 48 SHEET 1 G 2 PRO B 103 VAL B 104 0 SHEET 2 G 2 LEU B 113 VAL B 114 -1 O LEU B 113 N VAL B 104 LINK C LEU A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N THR A 35 1555 1555 1.33 LINK C THR A 35 N MSE A 36 1555 1555 1.35 LINK C MSE A 36 N GLY A 37 1555 1555 1.33 LINK C HIS A 39 N AMSE A 40 1555 1555 1.33 LINK C HIS A 39 N BMSE A 40 1555 1555 1.33 LINK C AMSE A 40 N MSE A 41 1555 1555 1.33 LINK C BMSE A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N MSE A 42 1555 1555 1.32 LINK C MSE A 42 N GLN A 43 1555 1555 1.32 LINK C ARG A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N THR A 178 1555 1555 1.31 LINK C LEU B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N THR B 35 1555 1555 1.33 LINK C THR B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N GLY B 37 1555 1555 1.33 LINK C HIS B 39 N AMSE B 40 1555 1555 1.34 LINK C HIS B 39 N BMSE B 40 1555 1555 1.34 LINK C AMSE B 40 N MSE B 41 1555 1555 1.32 LINK C BMSE B 40 N MSE B 41 1555 1555 1.33 LINK C MSE B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N GLN B 43 1555 1555 1.33 LINK C ARG B 176 N MSE B 177 1555 1555 1.32 LINK C MSE B 177 N THR B 178 1555 1555 1.32 LINK O HIS A 39 NA NA A 301 1555 1555 2.56 LINK NA NA A 301 O HOH A 376 1555 1555 2.52 LINK NA NA A 301 O HOH A 379 1555 1555 2.61 LINK NA NA A 301 O HIS B 39 1555 1555 2.54 LINK NA NA A 301 O HOH B 351 1555 1555 2.45 LINK NA NA A 301 O HOH B 423 1555 1555 2.10 LINK OD2 ASP B 110 NA NA B 301 1555 1555 2.92 LINK NA NA B 301 O HOH B 332 1555 1555 2.17 LINK NA NA B 301 O HOH B 436 1555 1555 2.62 CISPEP 1 GLU A 45 PRO A 46 0 -11.65 CISPEP 2 GLU A 45 PRO A 46 0 -6.97 CISPEP 3 GLU B 45 PRO B 46 0 -7.30 CISPEP 4 GLU B 45 PRO B 46 0 -10.14 SITE 1 AC1 21 ASN A 32 THR A 35 GLY A 37 PHE A 38 SITE 2 AC1 21 ILE A 52 ILE A 53 GLY A 54 TRP A 56 SITE 3 AC1 21 ASP A 57 TYR A 58 SER A 59 GLY A 86 SITE 4 AC1 21 CYS A 88 SER A 89 GLY A 90 LYS A 95 SITE 5 AC1 21 HIS A 158 HOH A 359 LYS B 179 TRP B 180 SITE 6 AC1 21 HOH B 375 SITE 1 AC2 23 LYS A 179 TRP A 180 HOH A 321 ASN B 32 SITE 2 AC2 23 THR B 35 GLY B 37 PHE B 38 ILE B 52 SITE 3 AC2 23 ILE B 53 GLY B 54 TRP B 56 ASP B 57 SITE 4 AC2 23 TYR B 58 SER B 59 ILE B 85 GLY B 86 SITE 5 AC2 23 ASN B 87 CYS B 88 SER B 89 GLY B 90 SITE 6 AC2 23 LYS B 95 HIS B 158 HOH B 359 SITE 1 AC3 8 GLU A 65 THR A 66 HOH A 322 HOH A 362 SITE 2 AC3 8 HOH A 504 ASP B 110 HOH B 332 HOH B 436 SITE 1 AC4 6 HIS A 39 HOH A 376 HOH A 379 HIS B 39 SITE 2 AC4 6 HOH B 351 HOH B 423 SITE 1 AC5 5 GLY A 174 TRP A 180 ARG A 181 HOH A 495 SITE 2 AC5 5 ASP B 161 SITE 1 AC6 3 TRP A 56 TRP B 180 HOH B 382 SITE 1 AC7 4 HIS A 44 TRP A 180 HOH A 341 TRP B 56 SITE 1 AC8 7 PHE A 38 ILE A 52 TRP A 56 GLN B 43 SITE 2 AC8 7 HIS B 44 HOH B 318 HOH B 333 SITE 1 AC9 4 HIS A 98 HOH A 493 HOH A 503 GLN B 107 SITE 1 BC1 5 ALA A 92 HOH A 493 PRO B 105 LEU B 113 SITE 2 BC1 5 TRP B 145 CRYST1 50.010 64.840 100.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019996 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009983 0.00000