HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-AUG-08 3E4X OBSLTE 19-MAY-09 3E4X 3GOR TITLE CRYSTAL STRUCTURE OF PUTATIVE METAL-DEPENDENT HYDROLASES TITLE 2 APC36150 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APC36150; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_COMMON: BACILLUS STEAROTHERMOPHILUS; SOURCE 4 ORGANISM_TAXID: 1422; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, DINB SUPERFAMILY, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, INTEGRATED CENTER FOR STRUCTURE AND KEYWDS 3 FUNCTION INNOVATION, ISFI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.R.COOPER,K.GRELEWSKA,Z.S.DEREWENDA,INTEGRATED CENTER FOR AUTHOR 2 STRUCTURE AND FUNCTION INNOVATION (ISFI) REVDAT 3 19-MAY-09 3E4X 1 MTRIX1 OBSLTE REVDAT 2 24-FEB-09 3E4X 1 VERSN REVDAT 1 14-OCT-08 3E4X 0 JRNL AUTH D.R.COOPER,K.GRELEWSKA,Z.S.DEREWENDA JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE METAL-DEPENDENT JRNL TITL 2 HYDROLASES APC36150 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 20004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6230 - 5.8970 1.00 2924 134 0.1660 0.2090 REMARK 3 2 5.8970 - 4.6840 1.00 2930 131 0.1450 0.2280 REMARK 3 3 4.6840 - 4.0930 1.00 2913 148 0.1320 0.2530 REMARK 3 4 4.0930 - 3.7190 1.00 2896 182 0.1460 0.2010 REMARK 3 5 3.7190 - 3.4530 1.00 2902 156 0.1610 0.2630 REMARK 3 6 3.4530 - 3.2490 1.00 2874 175 0.1770 0.2490 REMARK 3 7 3.2490 - 3.0870 1.00 2889 156 0.2080 0.2640 REMARK 3 8 3.0870 - 2.9530 0.97 2871 141 0.2030 0.3100 REMARK 3 9 2.9530 - 2.8390 0.92 2693 141 0.2280 0.3100 REMARK 3 10 2.8390 - 2.7410 0.86 2460 155 0.2230 0.3380 REMARK 3 11 2.7410 - 2.6550 0.82 2385 130 0.2410 0.3550 REMARK 3 12 2.6550 - 2.5790 0.78 2283 125 0.2500 0.3270 REMARK 3 13 2.5790 - 2.5110 0.71 2036 113 0.2520 0.3720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 52.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.35200 REMARK 3 B22 (A**2) : 18.91700 REMARK 3 B33 (A**2) : -10.57700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5203 REMARK 3 ANGLE : 0.972 7019 REMARK 3 CHIRALITY : 0.079 762 REMARK 3 PLANARITY : 0.004 894 REMARK 3 DIHEDRAL : 17.747 1889 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 1.0222 67.4388 76.0756 REMARK 3 T TENSOR REMARK 3 T11: 0.3045 T22: 0.4496 REMARK 3 T33: 0.1730 T12: 0.1138 REMARK 3 T13: -0.0590 T23: -0.1659 REMARK 3 L TENSOR REMARK 3 L11: 3.4545 L22: 2.2121 REMARK 3 L33: 1.6306 L12: 0.4501 REMARK 3 L13: 2.2728 L23: 0.2339 REMARK 3 S TENSOR REMARK 3 S11: -0.1934 S12: -0.8718 S13: 0.2338 REMARK 3 S21: -0.1191 S22: -0.1119 S23: 0.0242 REMARK 3 S31: -0.3750 S32: -0.5109 S33: -0.0209 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 5.8571 46.5428 70.2319 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.2913 REMARK 3 T33: 0.4458 T12: 0.0264 REMARK 3 T13: 0.0003 T23: 0.1900 REMARK 3 L TENSOR REMARK 3 L11: 3.8197 L22: 1.5170 REMARK 3 L33: 1.9891 L12: 1.8835 REMARK 3 L13: 0.6709 L23: 1.0445 REMARK 3 S TENSOR REMARK 3 S11: 0.1653 S12: -0.6066 S13: -0.9636 REMARK 3 S21: 0.0201 S22: -0.0518 S23: -0.4382 REMARK 3 S31: -0.1230 S32: 0.0588 S33: 0.0041 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -7.2351 13.5922 39.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.3732 REMARK 3 T33: 0.3094 T12: -0.0285 REMARK 3 T13: -0.0267 T23: 0.1397 REMARK 3 L TENSOR REMARK 3 L11: 5.3263 L22: 1.1530 REMARK 3 L33: 1.3352 L12: 0.4744 REMARK 3 L13: 0.9230 L23: 0.3463 REMARK 3 S TENSOR REMARK 3 S11: -0.1334 S12: 1.1131 S13: 0.4557 REMARK 3 S21: -0.1160 S22: 0.1650 S23: 0.1877 REMARK 3 S31: 0.1184 S32: -0.2748 S33: -0.0218 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 14.4634 13.3191 45.1359 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.3141 REMARK 3 T33: 0.2806 T12: -0.0187 REMARK 3 T13: -0.0227 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 3.5675 L22: 1.5559 REMARK 3 L33: 1.0221 L12: 0.3314 REMARK 3 L13: 0.0612 L23: -0.2463 REMARK 3 S TENSOR REMARK 3 S11: -0.1660 S12: 0.3225 S13: 0.1327 REMARK 3 S21: 0.0748 S22: 0.0531 S23: -0.2396 REMARK 3 S31: -0.0399 S32: 0.3234 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 3:150) AND (NAME CA REMARK 3 OR NAME C OR NAME N OR NAME O) REMARK 3 SELECTION : CHAIN B AND (RESID 3:150) AND (NAME CA REMARK 3 OR NAME C OR NAME N OR NAME O) REMARK 3 ATOM PAIRS NUMBER : 592 REMARK 3 RMSD : 0.044 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 3:150) AND (NAME CA REMARK 3 OR NAME C OR NAME N OR NAME O) REMARK 3 SELECTION : CHAIN C AND (RESID 3:150) AND (NAME CA REMARK 3 OR NAME C OR NAME N OR NAME O) REMARK 3 ATOM PAIRS NUMBER : 592 REMARK 3 RMSD : 0.044 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 3:150) AND (NAME CA REMARK 3 OR NAME C OR NAME N OR NAME O) REMARK 3 SELECTION : CHAIN D AND (RESID 3:150) AND (NAME CA REMARK 3 OR NAME C OR NAME N OR NAME O) REMARK 3 ATOM PAIRS NUMBER : 592 REMARK 3 RMSD : 0.041 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E4X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB048879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20004 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM ACETATE, 0.1 M REMARK 280 IMIDAZOLE PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.23850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.62800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.62800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.23850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAINS A & B AND CHAINS C & D) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 153 REMARK 465 GLY C 154 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 ARG D 153 REMARK 465 GLY D 154 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -1 59.84 101.12 REMARK 500 THR A 76 -52.87 77.00 REMARK 500 THR B 76 -50.12 76.47 REMARK 500 ARG B 153 6.72 -62.02 REMARK 500 ASN C -1 142.00 -33.46 REMARK 500 THR C 76 -46.43 70.80 REMARK 500 THR D 76 -53.41 78.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HIS A 127 NE2 87.1 REMARK 620 3 HIS A 131 NE2 80.6 82.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 47 NE2 REMARK 620 2 HIS B 127 NE2 96.0 REMARK 620 3 HIS B 131 NE2 83.5 85.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 47 NE2 REMARK 620 2 HIS C 127 NE2 83.4 REMARK 620 3 HIS C 131 NE2 86.6 81.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 200 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 47 NE2 REMARK 620 2 HIS D 127 NE2 86.0 REMARK 620 3 HIS D 131 NE2 88.4 84.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 200 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 200 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 200 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ISFI154 RELATED DB: TARGETDB DBREF 3E4X A -2 154 PDB 3E4X 3E4X 1 157 DBREF 3E4X B -2 154 PDB 3E4X 3E4X 1 157 DBREF 3E4X C -2 154 PDB 3E4X 3E4X 1 157 DBREF 3E4X D -2 154 PDB 3E4X 3E4X 1 157 SEQRES 1 A 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 A 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 A 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 A 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 A 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 A 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 A 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 A 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 A 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 A 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 A 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 A 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 A 157 GLY SEQRES 1 B 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 B 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 B 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 B 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 B 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 B 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 B 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 B 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 B 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 B 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 B 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 B 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 B 157 GLY SEQRES 1 C 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 C 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 C 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 C 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 C 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 C 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 C 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 C 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 C 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 C 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 C 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 C 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 C 157 GLY SEQRES 1 D 157 SER ASN ALA MSE SER ARG ALA LYS LYS TRP VAL GLN TYR SEQRES 2 D 157 PHE LEU SER HIS ARG HIS VAL THR MSE GLU LEU ILE HIS SEQRES 3 D 157 LYS ILE ASP GLU ALA HIS TYR ASP TYR LYS PRO THR PRO SEQRES 4 D 157 THR SER MSE THR ALA LYS GLN LEU ALA THR HIS MSE LEU SEQRES 5 D 157 PHE SER PHE TYR ASN PHE ALA ASN THR ALA LYS HIS GLY SEQRES 6 D 157 ASP PRO SER LEU PHE ARG GLN LYS ILE GLU GLU PRO GLU SEQRES 7 D 157 THR ASN LEU ALA LYS LEU ALA GLU THR TYR THR GLU LYS SEQRES 8 D 157 THR ARG GLN LEU ILE GLU SER MSE SER ASP ASP ASP PHE SEQRES 9 D 157 ASP ARG THR LEU ASP LEU THR ALA ILE PHE GLY THR GLN SEQRES 10 D 157 MSE SER THR ALA GLN PHE LEU GLN LEU ALA MSE ASP HIS SEQRES 11 D 157 GLU ILE HIS HIS LYS GLY GLN LEU PHE VAL TYR VAL ARG SEQRES 12 D 157 GLY MSE GLY HIS THR ASP LEU PRO LEU PHE VAL LYS ARG SEQRES 13 D 157 GLY MODRES 3E4X MSE A 1 MET SELENOMETHIONINE MODRES 3E4X MSE A 19 MET SELENOMETHIONINE MODRES 3E4X MSE A 39 MET SELENOMETHIONINE MODRES 3E4X MSE A 48 MET SELENOMETHIONINE MODRES 3E4X MSE A 96 MET SELENOMETHIONINE MODRES 3E4X MSE A 115 MET SELENOMETHIONINE MODRES 3E4X MSE A 125 MET SELENOMETHIONINE MODRES 3E4X MSE A 142 MET SELENOMETHIONINE MODRES 3E4X MSE B 1 MET SELENOMETHIONINE MODRES 3E4X MSE B 19 MET SELENOMETHIONINE MODRES 3E4X MSE B 39 MET SELENOMETHIONINE MODRES 3E4X MSE B 48 MET SELENOMETHIONINE MODRES 3E4X MSE B 96 MET SELENOMETHIONINE MODRES 3E4X MSE B 115 MET SELENOMETHIONINE MODRES 3E4X MSE B 125 MET SELENOMETHIONINE MODRES 3E4X MSE B 142 MET SELENOMETHIONINE MODRES 3E4X MSE C 1 MET SELENOMETHIONINE MODRES 3E4X MSE C 19 MET SELENOMETHIONINE MODRES 3E4X MSE C 39 MET SELENOMETHIONINE MODRES 3E4X MSE C 48 MET SELENOMETHIONINE MODRES 3E4X MSE C 96 MET SELENOMETHIONINE MODRES 3E4X MSE C 115 MET SELENOMETHIONINE MODRES 3E4X MSE C 125 MET SELENOMETHIONINE MODRES 3E4X MSE C 142 MET SELENOMETHIONINE MODRES 3E4X MSE D 19 MET SELENOMETHIONINE MODRES 3E4X MSE D 39 MET SELENOMETHIONINE MODRES 3E4X MSE D 48 MET SELENOMETHIONINE MODRES 3E4X MSE D 96 MET SELENOMETHIONINE MODRES 3E4X MSE D 115 MET SELENOMETHIONINE MODRES 3E4X MSE D 125 MET SELENOMETHIONINE MODRES 3E4X MSE D 142 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 19 8 HET MSE A 39 8 HET MSE A 48 8 HET MSE A 96 8 HET MSE A 115 8 HET MSE A 125 8 HET MSE A 142 8 HET MSE B 1 8 HET MSE B 19 8 HET MSE B 39 8 HET MSE B 48 8 HET MSE B 96 8 HET MSE B 115 8 HET MSE B 125 8 HET MSE B 142 8 HET MSE C 1 8 HET MSE C 19 8 HET MSE C 39 8 HET MSE C 48 8 HET MSE C 96 8 HET MSE C 115 8 HET MSE C 125 8 HET MSE C 142 8 HET MSE D 19 8 HET MSE D 39 8 HET MSE D 48 8 HET MSE D 96 8 HET MSE D 115 8 HET MSE D 125 8 HET MSE D 142 8 HET NI A 200 1 HET NI B 200 1 HET NI C 200 1 HET NI D 200 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 31(C5 H11 N O2 SE) FORMUL 5 NI 4(NI 2+) FORMUL 9 HOH *59(H2 O) HELIX 1 1 SER A 2 LYS A 24 1 23 HELIX 2 2 ILE A 25 TYR A 30 5 6 HELIX 3 3 THR A 40 GLY A 62 1 23 HELIX 4 4 ASP A 63 GLN A 69 5 7 HELIX 5 5 ASN A 77 SER A 95 1 19 HELIX 6 6 ASP A 99 ASP A 102 5 4 HELIX 7 7 LEU A 107 GLY A 112 1 6 HELIX 8 8 THR A 117 MSE A 142 1 26 HELIX 9 9 SER B 2 LYS B 24 1 23 HELIX 10 10 ILE B 25 TYR B 30 5 6 HELIX 11 11 THR B 40 HIS B 61 1 22 HELIX 12 12 ASP B 63 GLN B 69 5 7 HELIX 13 13 ASN B 77 SER B 95 1 19 HELIX 14 14 ASP B 99 ASP B 102 5 4 HELIX 15 15 LEU B 107 GLY B 112 1 6 HELIX 16 16 THR B 117 MSE B 142 1 26 HELIX 17 17 SER C 2 LYS C 24 1 23 HELIX 18 18 ILE C 25 TYR C 30 5 6 HELIX 19 19 THR C 40 GLY C 62 1 23 HELIX 20 20 ASP C 63 GLN C 69 5 7 HELIX 21 21 ASN C 77 SER C 95 1 19 HELIX 22 22 ASP C 99 ASP C 102 5 4 HELIX 23 23 LEU C 107 GLY C 112 1 6 HELIX 24 24 THR C 117 MSE C 142 1 26 HELIX 25 25 SER D 2 LYS D 24 1 23 HELIX 26 26 ILE D 25 TYR D 30 5 6 HELIX 27 27 THR D 40 GLY D 62 1 23 HELIX 28 28 ASP D 63 GLN D 69 5 7 HELIX 29 29 ASN D 77 SER D 95 1 19 HELIX 30 30 ASP D 99 ASP D 102 5 4 HELIX 31 31 LEU D 107 GLY D 112 1 6 HELIX 32 32 THR D 117 MSE D 142 1 26 SHEET 1 A 2 THR A 104 ASP A 106 0 SHEET 2 A 2 GLN A 114 SER A 116 -1 O MSE A 115 N LEU A 105 SHEET 1 B 2 THR B 104 ASP B 106 0 SHEET 2 B 2 GLN B 114 SER B 116 -1 O MSE B 115 N LEU B 105 SHEET 1 C 2 THR C 104 ASP C 106 0 SHEET 2 C 2 GLN C 114 SER C 116 -1 O MSE C 115 N LEU C 105 SHEET 1 D 2 THR D 104 ASP D 106 0 SHEET 2 D 2 GLN D 114 SER D 116 -1 O MSE D 115 N LEU D 105 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C THR A 18 N MSE A 19 1555 1555 1.33 LINK C MSE A 19 N GLU A 20 1555 1555 1.32 LINK C SER A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N THR A 40 1555 1555 1.33 LINK C HIS A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N LEU A 49 1555 1555 1.33 LINK C SER A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N SER A 97 1555 1555 1.33 LINK C GLN A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N SER A 116 1555 1555 1.33 LINK C ALA A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N ASP A 126 1555 1555 1.32 LINK C GLY A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLY A 143 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C THR B 18 N MSE B 19 1555 1555 1.33 LINK C MSE B 19 N GLU B 20 1555 1555 1.33 LINK C SER B 38 N MSE B 39 1555 1555 1.32 LINK C MSE B 39 N THR B 40 1555 1555 1.33 LINK C HIS B 47 N MSE B 48 1555 1555 1.33 LINK C MSE B 48 N LEU B 49 1555 1555 1.33 LINK C SER B 95 N MSE B 96 1555 1555 1.32 LINK C MSE B 96 N SER B 97 1555 1555 1.33 LINK C GLN B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N SER B 116 1555 1555 1.33 LINK C ALA B 124 N MSE B 125 1555 1555 1.32 LINK C MSE B 125 N ASP B 126 1555 1555 1.33 LINK C GLY B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLY B 143 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N SER C 2 1555 1555 1.33 LINK C THR C 18 N MSE C 19 1555 1555 1.32 LINK C MSE C 19 N GLU C 20 1555 1555 1.33 LINK C SER C 38 N MSE C 39 1555 1555 1.33 LINK C MSE C 39 N THR C 40 1555 1555 1.33 LINK C HIS C 47 N MSE C 48 1555 1555 1.33 LINK C MSE C 48 N LEU C 49 1555 1555 1.33 LINK C SER C 95 N MSE C 96 1555 1555 1.33 LINK C MSE C 96 N SER C 97 1555 1555 1.33 LINK C GLN C 114 N MSE C 115 1555 1555 1.33 LINK C MSE C 115 N SER C 116 1555 1555 1.33 LINK C ALA C 124 N MSE C 125 1555 1555 1.33 LINK C MSE C 125 N ASP C 126 1555 1555 1.33 LINK C GLY C 141 N MSE C 142 1555 1555 1.33 LINK C MSE C 142 N GLY C 143 1555 1555 1.33 LINK C THR D 18 N MSE D 19 1555 1555 1.33 LINK C MSE D 19 N GLU D 20 1555 1555 1.32 LINK C SER D 38 N MSE D 39 1555 1555 1.33 LINK C MSE D 39 N THR D 40 1555 1555 1.33 LINK C HIS D 47 N MSE D 48 1555 1555 1.33 LINK C MSE D 48 N LEU D 49 1555 1555 1.33 LINK C SER D 95 N MSE D 96 1555 1555 1.33 LINK C MSE D 96 N SER D 97 1555 1555 1.33 LINK C GLN D 114 N MSE D 115 1555 1555 1.33 LINK C MSE D 115 N SER D 116 1555 1555 1.33 LINK C ALA D 124 N MSE D 125 1555 1555 1.33 LINK C MSE D 125 N ASP D 126 1555 1555 1.33 LINK C GLY D 141 N MSE D 142 1555 1555 1.33 LINK C MSE D 142 N GLY D 143 1555 1555 1.33 LINK NE2 HIS A 47 NI NI A 200 1555 1555 2.28 LINK NE2 HIS A 127 NI NI A 200 1555 1555 2.31 LINK NE2 HIS A 131 NI NI A 200 1555 1555 2.28 LINK NE2 HIS B 47 NI NI B 200 1555 1555 2.12 LINK NE2 HIS B 127 NI NI B 200 1555 1555 2.11 LINK NE2 HIS B 131 NI NI B 200 1555 1555 2.31 LINK NE2 HIS C 47 NI NI C 200 1555 1555 2.34 LINK NE2 HIS C 127 NI NI C 200 1555 1555 2.35 LINK NE2 HIS C 131 NI NI C 200 1555 1555 2.28 LINK NE2 HIS D 47 NI NI D 200 1555 1555 2.26 LINK NE2 HIS D 127 NI NI D 200 1555 1555 2.30 LINK NE2 HIS D 131 NI NI D 200 1555 1555 2.21 SITE 1 AC1 3 HIS A 47 HIS A 127 HIS A 131 SITE 1 AC2 4 SER B -2 HIS B 47 HIS B 127 HIS B 131 SITE 1 AC3 4 SER C -2 HIS C 47 HIS C 127 HIS C 131 SITE 1 AC4 4 SER A -2 HIS D 47 HIS D 127 HIS D 131 CRYST1 68.477 71.470 123.256 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013992 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008113 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.588739 0.321596 -0.741594 41.43850 MTRIX2 2 0.286043 -0.775195 -0.563251 141.33200 MTRIX3 2 -0.756020 -0.543736 0.364397 80.17600 MTRIX1 3 0.427045 0.445171 -0.787055 28.84870 MTRIX2 3 -0.842449 -0.120337 -0.525166 83.51110 MTRIX3 3 -0.328500 0.887323 0.323644 49.04130 MTRIX1 4 -0.276141 -0.960064 0.044984 15.68320 MTRIX2 4 0.960915 -0.276740 -0.007556 57.49480 MTRIX3 4 0.019703 0.041139 0.998959 30.91590