data_3E54 # _entry.id 3E54 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3E54 pdb_00003e54 10.2210/pdb3e54/pdb NDB PD1179 ? ? RCSB RCSB048886 ? ? WWPDB D_1000048886 ? ? # _pdbx_database_status.entry_id 3E54 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-08-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nomura, N.' 1 'Nomura, Y.' 2 'Sussman, D.' 3 'Stoddard, B.L.' 4 # _citation.id primary _citation.title 'Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 36 _citation.page_first 6988 _citation.page_last 6998 _citation.year 2008 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18984620 _citation.pdbx_database_id_DOI 10.1093/nar/gkn846 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nomura, N.' 1 ? primary 'Nomura, Y.' 2 ? primary 'Sussman, D.' 3 ? primary 'Klein, D.' 4 ? primary 'Stoddard, B.L.' 5 ? # _cell.entry_id 3E54 _cell.length_a 66.580 _cell.length_b 66.580 _cell.length_c 217.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3E54 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RRNA intron-encoded endonuclease' 19616.646 2 3.1.-.- 'I65M, I107M' ? ? 2 polymer syn ;DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3') ; 3901.560 1 ? ? ? 'I-Vdi141I DNA Target Site' 3 polymer syn ;DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3') ; 2764.837 1 ? ? ? 'I-Vdi141I DNA Target Site' 4 polymer syn ;DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3') ; 3941.584 1 ? ? ? 'I-Vdi141I DNA Target Site' 5 polymer syn ;DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3') ; 2804.861 1 ? ? ? 'I-Vdi141I DNA Target Site' 6 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 7 non-polymer syn ETHANOL 46.068 3 ? ? ? ? 8 water nat water 18.015 113 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Homing Endonuclease I-Vdi141I' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MVHEEDFKEGYILGFIEAEGSFSVSIKFQRDVFGGVRLDPVFSITQKNREVLEAIKEHLGIGRIMEKAGQPNTYVYVVDN FNELVKLINFLNKYADFMIVKKRQFLMFREIANGLVNGEHLHINGLKRLVKLAYELTKESEKGYRKYDLNHVLSIIDKWD LGRNVSTSL ; ;MVHEEDFKEGYILGFIEAEGSFSVSIKFQRDVFGGVRLDPVFSITQKNREVLEAIKEHLGIGRIMEKAGQPNTYVYVVDN FNELVKLINFLNKYADFMIVKKRQFLMFREIANGLVNGEHLHINGLKRLVKLAYELTKESEKGYRKYDLNHVLSIIDKWD LGRNVSTSL ; A,B ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DT)(DC)(DT)(DT)(DA)(DA)' CTGACTCTCTTAA C ? 3 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DG)(DC)(DC)(DA)(DA)' GGTAGCCAA D ? 4 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DC)(DT)(DA)(DC)(DC)(DT)(DT)(DA)(DA)' TTGGCTACCTTAA E ? 5 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DA)(DG)(DT)(DC)(DA)(DG)' GAGAGTCAG F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 HIS n 1 4 GLU n 1 5 GLU n 1 6 ASP n 1 7 PHE n 1 8 LYS n 1 9 GLU n 1 10 GLY n 1 11 TYR n 1 12 ILE n 1 13 LEU n 1 14 GLY n 1 15 PHE n 1 16 ILE n 1 17 GLU n 1 18 ALA n 1 19 GLU n 1 20 GLY n 1 21 SER n 1 22 PHE n 1 23 SER n 1 24 VAL n 1 25 SER n 1 26 ILE n 1 27 LYS n 1 28 PHE n 1 29 GLN n 1 30 ARG n 1 31 ASP n 1 32 VAL n 1 33 PHE n 1 34 GLY n 1 35 GLY n 1 36 VAL n 1 37 ARG n 1 38 LEU n 1 39 ASP n 1 40 PRO n 1 41 VAL n 1 42 PHE n 1 43 SER n 1 44 ILE n 1 45 THR n 1 46 GLN n 1 47 LYS n 1 48 ASN n 1 49 ARG n 1 50 GLU n 1 51 VAL n 1 52 LEU n 1 53 GLU n 1 54 ALA n 1 55 ILE n 1 56 LYS n 1 57 GLU n 1 58 HIS n 1 59 LEU n 1 60 GLY n 1 61 ILE n 1 62 GLY n 1 63 ARG n 1 64 ILE n 1 65 MET n 1 66 GLU n 1 67 LYS n 1 68 ALA n 1 69 GLY n 1 70 GLN n 1 71 PRO n 1 72 ASN n 1 73 THR n 1 74 TYR n 1 75 VAL n 1 76 TYR n 1 77 VAL n 1 78 VAL n 1 79 ASP n 1 80 ASN n 1 81 PHE n 1 82 ASN n 1 83 GLU n 1 84 LEU n 1 85 VAL n 1 86 LYS n 1 87 LEU n 1 88 ILE n 1 89 ASN n 1 90 PHE n 1 91 LEU n 1 92 ASN n 1 93 LYS n 1 94 TYR n 1 95 ALA n 1 96 ASP n 1 97 PHE n 1 98 MET n 1 99 ILE n 1 100 VAL n 1 101 LYS n 1 102 LYS n 1 103 ARG n 1 104 GLN n 1 105 PHE n 1 106 LEU n 1 107 MET n 1 108 PHE n 1 109 ARG n 1 110 GLU n 1 111 ILE n 1 112 ALA n 1 113 ASN n 1 114 GLY n 1 115 LEU n 1 116 VAL n 1 117 ASN n 1 118 GLY n 1 119 GLU n 1 120 HIS n 1 121 LEU n 1 122 HIS n 1 123 ILE n 1 124 ASN n 1 125 GLY n 1 126 LEU n 1 127 LYS n 1 128 ARG n 1 129 LEU n 1 130 VAL n 1 131 LYS n 1 132 LEU n 1 133 ALA n 1 134 TYR n 1 135 GLU n 1 136 LEU n 1 137 THR n 1 138 LYS n 1 139 GLU n 1 140 SER n 1 141 GLU n 1 142 LYS n 1 143 GLY n 1 144 TYR n 1 145 ARG n 1 146 LYS n 1 147 TYR n 1 148 ASP n 1 149 LEU n 1 150 ASN n 1 151 HIS n 1 152 VAL n 1 153 LEU n 1 154 SER n 1 155 ILE n 1 156 ILE n 1 157 ASP n 1 158 LYS n 1 159 TRP n 1 160 ASP n 1 161 LEU n 1 162 GLY n 1 163 ARG n 1 164 ASN n 1 165 VAL n 1 166 SER n 1 167 THR n 1 168 SER n 1 169 LEU n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DC n 2 8 DT n 2 9 DC n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DA n 3 1 DG n 3 2 DG n 3 3 DT n 3 4 DA n 3 5 DG n 3 6 DC n 3 7 DC n 3 8 DA n 3 9 DA n 4 1 DT n 4 2 DT n 4 3 DG n 4 4 DG n 4 5 DC n 4 6 DT n 4 7 DA n 4 8 DC n 4 9 DC n 4 10 DT n 4 11 DT n 4 12 DA n 4 13 DA n 5 1 DG n 5 2 DA n 5 3 DG n 5 4 DA n 5 5 DG n 5 6 DT n 5 7 DC n 5 8 DA n 5 9 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene '23S rRNA intron (Vdi141.L1927)' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain IC-141 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vulcanisaeta distributa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 164451 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus (DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pVdiI65M/I107M-10 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q6L703_9CREN Q6L703 1 ;MVHEEDFKEGYILGFIEAEGSFSVSIKFQRDVFGGVRLDPVFSITQKNREVLEAIKEHLGIGRIIEKAGQPNTYVYVVDN FNELVKLINFLNKYADFMIVKKRQFLIFREIANGLVNGEHLHINGLKRLVKLAYELTKESEKGYRKYDLNHVLSIIDKWD LGRNVSTSL ; 1 ? 2 PDB 3E54 3E54 2 CTGACTCTCTTAA 490 ? 3 PDB 3E54 3E54 3 GGTAGCCAA 503 ? 4 PDB 3E54 3E54 4 TTGGCTACCTTAA 601 ? 5 PDB 3E54 3E54 5 GAGAGTCAG 614 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3E54 A 1 ? 169 ? Q6L703 1 ? 169 ? 1 169 2 1 3E54 B 1 ? 169 ? Q6L703 1 ? 169 ? 201 369 3 2 3E54 C 1 ? 13 ? 3E54 490 ? 502 ? 490 502 4 3 3E54 D 1 ? 9 ? 3E54 503 ? 511 ? 503 511 5 4 3E54 E 1 ? 13 ? 3E54 601 ? 613 ? 601 613 6 5 3E54 F 1 ? 9 ? 3E54 614 ? 622 ? 614 622 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3E54 MET A 65 ? UNP Q6L703 ILE 65 'engineered mutation' 65 1 1 3E54 MET A 107 ? UNP Q6L703 ILE 107 'engineered mutation' 107 2 2 3E54 MET B 65 ? UNP Q6L703 ILE 65 'engineered mutation' 265 3 2 3E54 MET B 107 ? UNP Q6L703 ILE 107 'engineered mutation' 307 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3E54 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 53.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 299 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '9% ethanol, 100mM MgCl2, 100mM HEPES-NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 299K' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 ethanol ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 HEPES-NaOH ? ? ? 1 4 1 H2O ? ? ? 1 5 2 MgCl2 ? ? ? 1 6 2 HEPES-NaOH ? ? ? 1 7 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-04-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97911 1.0 2 0.97945 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97911, 0.97945' # _reflns.entry_id 3E54 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.320 _reflns.number_obs 23652 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.06800 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 32.0 _reflns.pdbx_redundancy 22.400 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.32 _reflns_shell.d_res_low 2.40 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.25200 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 21.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3E54 _refine.ls_number_reflns_obs 18252 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2019520.67 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.16 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 96.8 _refine.ls_R_factor_obs 0.231 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.231 _refine.ls_R_factor_R_free 0.250 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 1798 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 44.3 _refine.aniso_B[1][1] 6.13 _refine.aniso_B[2][2] 6.13 _refine.aniso_B[3][3] -12.25 _refine.aniso_B[1][2] -1.58 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.335746 _refine.solvent_model_param_bsol 36.9873 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3E54 _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.40 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2610 _refine_hist.pdbx_number_atoms_nucleic_acid 898 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 3635 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 45.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.07 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.28 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.83 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.23 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 8.07 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.66 _refine_ls_shell.number_reflns_R_work 2645 _refine_ls_shell.R_factor_R_work 0.309 _refine_ls_shell.percent_reflns_obs 94.9 _refine_ls_shell.R_factor_R_free 0.363 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 10.5 _refine_ls_shell.number_reflns_R_free 310 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 EtOH.param EtOH.top 'X-RAY DIFFRACTION' # _struct.entry_id 3E54 _struct.title 'Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3E54 _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'protein-DNA complex, LAGLIDADG, homing, endonuclease, DNA recognition, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 7 ? M N N 7 ? N N N 7 ? O N N 8 ? P N N 8 ? Q N N 8 ? R N N 8 ? S N N 8 ? T N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 5 ? GLU A 19 ? GLU A 5 GLU A 19 1 ? 15 HELX_P HELX_P2 2 VAL A 32 ? GLY A 34 ? VAL A 32 GLY A 34 5 ? 3 HELX_P HELX_P3 3 ASN A 48 ? GLY A 60 ? ASN A 48 GLY A 60 1 ? 13 HELX_P HELX_P4 4 ASN A 80 ? LYS A 93 ? ASN A 80 LYS A 93 1 ? 14 HELX_P HELX_P5 5 TYR A 94 ? MET A 98 ? TYR A 94 MET A 98 5 ? 5 HELX_P HELX_P6 6 LYS A 101 ? ASN A 117 ? LYS A 101 ASN A 117 1 ? 17 HELX_P HELX_P7 7 GLY A 118 ? LEU A 121 ? GLY A 118 LEU A 121 5 ? 4 HELX_P HELX_P8 8 HIS A 122 ? SER A 140 ? HIS A 122 SER A 140 1 ? 19 HELX_P HELX_P9 9 ASP A 148 ? LEU A 161 ? ASP A 148 LEU A 161 1 ? 14 HELX_P HELX_P10 10 GLU B 4 ? GLU B 19 ? GLU B 204 GLU B 219 1 ? 16 HELX_P HELX_P11 11 VAL B 32 ? VAL B 36 ? VAL B 232 VAL B 236 5 ? 5 HELX_P HELX_P12 12 ASN B 48 ? GLY B 60 ? ASN B 248 GLY B 260 1 ? 13 HELX_P HELX_P13 13 ASN B 80 ? ALA B 95 ? ASN B 280 ALA B 295 1 ? 16 HELX_P HELX_P14 14 LYS B 101 ? ASN B 117 ? LYS B 301 ASN B 317 1 ? 17 HELX_P HELX_P15 15 GLY B 118 ? LEU B 121 ? GLY B 318 LEU B 321 5 ? 4 HELX_P HELX_P16 16 HIS B 122 ? SER B 140 ? HIS B 322 SER B 340 1 ? 19 HELX_P HELX_P17 17 ASP B 148 ? GLY B 162 ? ASP B 348 GLY B 362 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DC 1 N3 ? ? ? 1_555 F DG 9 N1 ? ? C DC 490 F DG 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 1 N4 ? ? ? 1_555 F DG 9 O6 ? ? C DC 490 F DG 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 1 O2 ? ? ? 1_555 F DG 9 N2 ? ? C DC 490 F DG 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DT 2 N3 ? ? ? 1_555 F DA 8 N1 ? ? C DT 491 F DA 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DT 2 O4 ? ? ? 1_555 F DA 8 N6 ? ? C DT 491 F DA 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 3 N1 ? ? ? 1_555 F DC 7 N3 ? ? C DG 492 F DC 620 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 3 N2 ? ? ? 1_555 F DC 7 O2 ? ? C DG 492 F DC 620 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DG 3 O6 ? ? ? 1_555 F DC 7 N4 ? ? C DG 492 F DC 620 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DA 4 N1 ? ? ? 1_555 F DT 6 N3 ? ? C DA 493 F DT 619 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 4 N6 ? ? ? 1_555 F DT 6 O4 ? ? C DA 493 F DT 619 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 5 N3 ? ? ? 1_555 F DG 5 N1 ? ? C DC 494 F DG 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 5 N4 ? ? ? 1_555 F DG 5 O6 ? ? C DC 494 F DG 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 5 O2 ? ? ? 1_555 F DG 5 N2 ? ? C DC 494 F DG 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 6 N3 ? ? ? 1_555 F DA 4 N1 ? ? C DT 495 F DA 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 6 O4 ? ? ? 1_555 F DA 4 N6 ? ? C DT 495 F DA 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 7 N3 ? ? ? 1_555 F DG 3 N1 ? ? C DC 496 F DG 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 7 N4 ? ? ? 1_555 F DG 3 O6 ? ? C DC 496 F DG 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DC 7 O2 ? ? ? 1_555 F DG 3 N2 ? ? C DC 496 F DG 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 8 N3 ? ? ? 1_555 F DA 2 N1 ? ? C DT 497 F DA 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 8 O4 ? ? ? 1_555 F DA 2 N6 ? ? C DT 497 F DA 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 9 N3 ? ? ? 1_555 F DG 1 N1 ? ? C DC 498 F DG 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 9 N4 ? ? ? 1_555 F DG 1 O6 ? ? C DC 498 F DG 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 9 O2 ? ? ? 1_555 F DG 1 N2 ? ? C DC 498 F DG 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DT 10 N3 ? ? ? 1_555 E DA 13 N1 ? ? C DT 499 E DA 613 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DT 10 O4 ? ? ? 1_555 E DA 13 N6 ? ? C DT 499 E DA 613 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DT 11 N3 ? ? ? 1_555 E DA 12 N1 ? ? C DT 500 E DA 612 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DT 11 O4 ? ? ? 1_555 E DA 12 N6 ? ? C DT 500 E DA 612 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DA 12 N1 ? ? ? 1_555 E DT 11 N3 ? ? C DA 501 E DT 611 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DA 12 N6 ? ? ? 1_555 E DT 11 O4 ? ? C DA 501 E DT 611 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DA 13 N1 ? ? ? 1_555 E DT 10 N3 ? ? C DA 502 E DT 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DA 13 N6 ? ? ? 1_555 E DT 10 O4 ? ? C DA 502 E DT 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D DG 1 N1 ? ? ? 1_555 E DC 9 N3 ? ? D DG 503 E DC 609 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? D DG 1 N2 ? ? ? 1_555 E DC 9 O2 ? ? D DG 503 E DC 609 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? D DG 1 O6 ? ? ? 1_555 E DC 9 N4 ? ? D DG 503 E DC 609 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D DG 2 N1 ? ? ? 1_555 E DC 8 N3 ? ? D DG 504 E DC 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? D DG 2 N2 ? ? ? 1_555 E DC 8 O2 ? ? D DG 504 E DC 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? D DG 2 O6 ? ? ? 1_555 E DC 8 N4 ? ? D DG 504 E DC 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? D DT 3 N3 ? ? ? 1_555 E DA 7 N1 ? ? D DT 505 E DA 607 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? D DT 3 O4 ? ? ? 1_555 E DA 7 N6 ? ? D DT 505 E DA 607 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? D DA 4 N1 ? ? ? 1_555 E DT 6 N3 ? ? D DA 506 E DT 606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? D DA 4 N6 ? ? ? 1_555 E DT 6 O4 ? ? D DA 506 E DT 606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? D DG 5 N1 ? ? ? 1_555 E DC 5 N3 ? ? D DG 507 E DC 605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? D DG 5 N2 ? ? ? 1_555 E DC 5 O2 ? ? D DG 507 E DC 605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? D DG 5 O6 ? ? ? 1_555 E DC 5 N4 ? ? D DG 507 E DC 605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? D DC 6 N3 ? ? ? 1_555 E DG 4 N1 ? ? D DC 508 E DG 604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D DC 6 N4 ? ? ? 1_555 E DG 4 O6 ? ? D DC 508 E DG 604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? D DC 6 O2 ? ? ? 1_555 E DG 4 N2 ? ? D DC 508 E DG 604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? D DC 7 N3 ? ? ? 1_555 E DG 3 N1 ? ? D DC 509 E DG 603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? D DC 7 N4 ? ? ? 1_555 E DG 3 O6 ? ? D DC 509 E DG 603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? D DC 7 O2 ? ? ? 1_555 E DG 3 N2 ? ? D DC 509 E DG 603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D DA 8 N1 ? ? ? 1_555 E DT 2 N3 ? ? D DA 510 E DT 602 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D DA 8 N6 ? ? ? 1_555 E DT 2 O4 ? ? D DA 510 E DT 602 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D DA 9 N1 ? ? ? 1_555 E DT 1 N3 ? ? D DA 511 E DT 601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D DA 9 N6 ? ? ? 1_555 E DT 1 O4 ? ? D DA 511 E DT 601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 20 ? PHE A 28 ? GLY A 20 PHE A 28 A 2 VAL A 36 ? GLN A 46 ? VAL A 36 GLN A 46 A 3 TYR A 74 ? VAL A 78 ? TYR A 74 VAL A 78 A 4 ARG A 63 ? GLU A 66 ? ARG A 63 GLU A 66 B 1 GLY B 20 ? LYS B 27 ? GLY B 220 LYS B 227 B 2 ARG B 37 ? GLN B 46 ? ARG B 237 GLN B 246 B 3 TYR B 74 ? VAL B 78 ? TYR B 274 VAL B 278 B 4 ARG B 63 ? GLU B 66 ? ARG B 263 GLU B 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 23 ? N SER A 23 O VAL A 41 ? O VAL A 41 A 2 3 N ILE A 44 ? N ILE A 44 O TYR A 76 ? O TYR A 76 A 3 4 O VAL A 77 ? O VAL A 77 N ARG A 63 ? N ARG A 63 B 1 2 N SER B 23 ? N SER B 223 O VAL B 41 ? O VAL B 241 B 2 3 N ILE B 44 ? N ILE B 244 O TYR B 76 ? O TYR B 276 B 3 4 O VAL B 77 ? O VAL B 277 N ARG B 63 ? N ARG B 263 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 702 ? 5 'BINDING SITE FOR RESIDUE MG A 702' AC2 Software A MG 704 ? 2 'BINDING SITE FOR RESIDUE MG A 704' AC3 Software B MG 701 ? 6 'BINDING SITE FOR RESIDUE MG B 701' AC4 Software B MG 705 ? 2 'BINDING SITE FOR RESIDUE MG B 705' AC5 Software C MG 703 ? 5 'BINDING SITE FOR RESIDUE MG C 703' AC6 Software D EOH 801 ? 4 'BINDING SITE FOR RESIDUE EOH D 801' AC7 Software E EOH 803 ? 2 'BINDING SITE FOR RESIDUE EOH E 803' AC8 Software F EOH 802 ? 2 'BINDING SITE FOR RESIDUE EOH F 802' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLU A 19 ? GLU A 19 . ? 1_555 ? 2 AC1 5 ALA B 18 ? ALA B 218 . ? 1_555 ? 3 AC1 5 DG D 1 ? DG D 503 . ? 1_555 ? 4 AC1 5 EOH L . ? EOH D 801 . ? 1_555 ? 5 AC1 5 DA E 13 ? DA E 613 . ? 1_555 ? 6 AC2 2 ASP A 39 ? ASP A 39 . ? 1_555 ? 7 AC2 2 DA C 4 ? DA C 493 . ? 1_555 ? 8 AC3 6 GLU A 19 ? GLU A 19 . ? 1_555 ? 9 AC3 6 GLU B 19 ? GLU B 219 . ? 1_555 ? 10 AC3 6 DA C 13 ? DA C 502 . ? 1_555 ? 11 AC3 6 DG D 1 ? DG D 503 . ? 1_555 ? 12 AC3 6 DA E 13 ? DA E 613 . ? 1_555 ? 13 AC3 6 DG F 1 ? DG F 614 . ? 1_555 ? 14 AC4 2 ASP B 39 ? ASP B 239 . ? 1_555 ? 15 AC4 2 DG E 4 ? DG E 604 . ? 1_555 ? 16 AC5 5 ALA A 18 ? ALA A 18 . ? 1_555 ? 17 AC5 5 GLU B 19 ? GLU B 219 . ? 1_555 ? 18 AC5 5 GLN B 46 ? GLN B 246 . ? 1_555 ? 19 AC5 5 DA C 13 ? DA C 502 . ? 1_555 ? 20 AC5 5 DG F 1 ? DG F 614 . ? 1_555 ? 21 AC6 4 MG G . ? MG A 702 . ? 1_555 ? 22 AC6 4 LYS B 101 ? LYS B 301 . ? 1_555 ? 23 AC6 4 DG D 1 ? DG D 503 . ? 1_555 ? 24 AC6 4 DA E 12 ? DA E 612 . ? 1_555 ? 25 AC7 2 DT C 11 ? DT C 500 . ? 1_555 ? 26 AC7 2 DT E 11 ? DT E 611 . ? 1_555 ? 27 AC8 2 LYS A 101 ? LYS A 101 . ? 1_555 ? 28 AC8 2 DG F 1 ? DG F 614 . ? 1_555 ? # _atom_sites.entry_id 3E54 _atom_sites.fract_transf_matrix[1][1] 0.015020 _atom_sites.fract_transf_matrix[1][2] 0.008672 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017343 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004589 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 LYS 142 142 142 LYS LYS A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 TYR 144 144 144 TYR TYR A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 HIS 151 151 151 HIS HIS A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 SER 154 154 154 SER SER A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 GLY 162 162 162 GLY GLY A . n A 1 163 ARG 163 163 ? ? ? A . n A 1 164 ASN 164 164 ? ? ? A . n A 1 165 VAL 165 165 ? ? ? A . n A 1 166 SER 166 166 ? ? ? A . n A 1 167 THR 167 167 ? ? ? A . n A 1 168 SER 168 168 ? ? ? A . n A 1 169 LEU 169 169 ? ? ? A . n B 1 1 MET 1 201 ? ? ? B . n B 1 2 VAL 2 202 ? ? ? B . n B 1 3 HIS 3 203 ? ? ? B . n B 1 4 GLU 4 204 204 GLU GLU B . n B 1 5 GLU 5 205 205 GLU GLU B . n B 1 6 ASP 6 206 206 ASP ASP B . n B 1 7 PHE 7 207 207 PHE PHE B . n B 1 8 LYS 8 208 208 LYS LYS B . n B 1 9 GLU 9 209 209 GLU GLU B . n B 1 10 GLY 10 210 210 GLY GLY B . n B 1 11 TYR 11 211 211 TYR TYR B . n B 1 12 ILE 12 212 212 ILE ILE B . n B 1 13 LEU 13 213 213 LEU LEU B . n B 1 14 GLY 14 214 214 GLY GLY B . n B 1 15 PHE 15 215 215 PHE PHE B . n B 1 16 ILE 16 216 216 ILE ILE B . n B 1 17 GLU 17 217 217 GLU GLU B . n B 1 18 ALA 18 218 218 ALA ALA B . n B 1 19 GLU 19 219 219 GLU GLU B . n B 1 20 GLY 20 220 220 GLY GLY B . n B 1 21 SER 21 221 221 SER SER B . n B 1 22 PHE 22 222 222 PHE PHE B . n B 1 23 SER 23 223 223 SER SER B . n B 1 24 VAL 24 224 224 VAL VAL B . n B 1 25 SER 25 225 225 SER SER B . n B 1 26 ILE 26 226 226 ILE ILE B . n B 1 27 LYS 27 227 227 LYS LYS B . n B 1 28 PHE 28 228 228 PHE PHE B . n B 1 29 GLN 29 229 229 GLN GLN B . n B 1 30 ARG 30 230 230 ARG ARG B . n B 1 31 ASP 31 231 231 ASP ASP B . n B 1 32 VAL 32 232 232 VAL VAL B . n B 1 33 PHE 33 233 233 PHE PHE B . n B 1 34 GLY 34 234 234 GLY GLY B . n B 1 35 GLY 35 235 235 GLY GLY B . n B 1 36 VAL 36 236 236 VAL VAL B . n B 1 37 ARG 37 237 237 ARG ARG B . n B 1 38 LEU 38 238 238 LEU LEU B . n B 1 39 ASP 39 239 239 ASP ASP B . n B 1 40 PRO 40 240 240 PRO PRO B . n B 1 41 VAL 41 241 241 VAL VAL B . n B 1 42 PHE 42 242 242 PHE PHE B . n B 1 43 SER 43 243 243 SER SER B . n B 1 44 ILE 44 244 244 ILE ILE B . n B 1 45 THR 45 245 245 THR THR B . n B 1 46 GLN 46 246 246 GLN GLN B . n B 1 47 LYS 47 247 247 LYS LYS B . n B 1 48 ASN 48 248 248 ASN ASN B . n B 1 49 ARG 49 249 249 ARG ARG B . n B 1 50 GLU 50 250 250 GLU GLU B . n B 1 51 VAL 51 251 251 VAL VAL B . n B 1 52 LEU 52 252 252 LEU LEU B . n B 1 53 GLU 53 253 253 GLU GLU B . n B 1 54 ALA 54 254 254 ALA ALA B . n B 1 55 ILE 55 255 255 ILE ILE B . n B 1 56 LYS 56 256 256 LYS LYS B . n B 1 57 GLU 57 257 257 GLU GLU B . n B 1 58 HIS 58 258 258 HIS HIS B . n B 1 59 LEU 59 259 259 LEU LEU B . n B 1 60 GLY 60 260 260 GLY GLY B . n B 1 61 ILE 61 261 261 ILE ILE B . n B 1 62 GLY 62 262 262 GLY GLY B . n B 1 63 ARG 63 263 263 ARG ARG B . n B 1 64 ILE 64 264 264 ILE ILE B . n B 1 65 MET 65 265 265 MET MET B . n B 1 66 GLU 66 266 266 GLU GLU B . n B 1 67 LYS 67 267 267 LYS LYS B . n B 1 68 ALA 68 268 268 ALA ALA B . n B 1 69 GLY 69 269 269 GLY GLY B . n B 1 70 GLN 70 270 270 GLN GLN B . n B 1 71 PRO 71 271 271 PRO PRO B . n B 1 72 ASN 72 272 272 ASN ASN B . n B 1 73 THR 73 273 273 THR THR B . n B 1 74 TYR 74 274 274 TYR TYR B . n B 1 75 VAL 75 275 275 VAL VAL B . n B 1 76 TYR 76 276 276 TYR TYR B . n B 1 77 VAL 77 277 277 VAL VAL B . n B 1 78 VAL 78 278 278 VAL VAL B . n B 1 79 ASP 79 279 279 ASP ASP B . n B 1 80 ASN 80 280 280 ASN ASN B . n B 1 81 PHE 81 281 281 PHE PHE B . n B 1 82 ASN 82 282 282 ASN ASN B . n B 1 83 GLU 83 283 283 GLU GLU B . n B 1 84 LEU 84 284 284 LEU LEU B . n B 1 85 VAL 85 285 285 VAL VAL B . n B 1 86 LYS 86 286 286 LYS LYS B . n B 1 87 LEU 87 287 287 LEU LEU B . n B 1 88 ILE 88 288 288 ILE ILE B . n B 1 89 ASN 89 289 289 ASN ASN B . n B 1 90 PHE 90 290 290 PHE PHE B . n B 1 91 LEU 91 291 291 LEU LEU B . n B 1 92 ASN 92 292 292 ASN ASN B . n B 1 93 LYS 93 293 293 LYS LYS B . n B 1 94 TYR 94 294 294 TYR TYR B . n B 1 95 ALA 95 295 295 ALA ALA B . n B 1 96 ASP 96 296 296 ASP ASP B . n B 1 97 PHE 97 297 297 PHE PHE B . n B 1 98 MET 98 298 298 MET MET B . n B 1 99 ILE 99 299 299 ILE ILE B . n B 1 100 VAL 100 300 300 VAL VAL B . n B 1 101 LYS 101 301 301 LYS LYS B . n B 1 102 LYS 102 302 302 LYS LYS B . n B 1 103 ARG 103 303 303 ARG ARG B . n B 1 104 GLN 104 304 304 GLN GLN B . n B 1 105 PHE 105 305 305 PHE PHE B . n B 1 106 LEU 106 306 306 LEU LEU B . n B 1 107 MET 107 307 307 MET MET B . n B 1 108 PHE 108 308 308 PHE PHE B . n B 1 109 ARG 109 309 309 ARG ARG B . n B 1 110 GLU 110 310 310 GLU GLU B . n B 1 111 ILE 111 311 311 ILE ILE B . n B 1 112 ALA 112 312 312 ALA ALA B . n B 1 113 ASN 113 313 313 ASN ASN B . n B 1 114 GLY 114 314 314 GLY GLY B . n B 1 115 LEU 115 315 315 LEU LEU B . n B 1 116 VAL 116 316 316 VAL VAL B . n B 1 117 ASN 117 317 317 ASN ASN B . n B 1 118 GLY 118 318 318 GLY GLY B . n B 1 119 GLU 119 319 319 GLU GLU B . n B 1 120 HIS 120 320 320 HIS HIS B . n B 1 121 LEU 121 321 321 LEU LEU B . n B 1 122 HIS 122 322 322 HIS HIS B . n B 1 123 ILE 123 323 323 ILE ILE B . n B 1 124 ASN 124 324 324 ASN ASN B . n B 1 125 GLY 125 325 325 GLY GLY B . n B 1 126 LEU 126 326 326 LEU LEU B . n B 1 127 LYS 127 327 327 LYS LYS B . n B 1 128 ARG 128 328 328 ARG ARG B . n B 1 129 LEU 129 329 329 LEU LEU B . n B 1 130 VAL 130 330 330 VAL VAL B . n B 1 131 LYS 131 331 331 LYS LYS B . n B 1 132 LEU 132 332 332 LEU LEU B . n B 1 133 ALA 133 333 333 ALA ALA B . n B 1 134 TYR 134 334 334 TYR TYR B . n B 1 135 GLU 135 335 335 GLU GLU B . n B 1 136 LEU 136 336 336 LEU LEU B . n B 1 137 THR 137 337 337 THR THR B . n B 1 138 LYS 138 338 338 LYS LYS B . n B 1 139 GLU 139 339 339 GLU GLU B . n B 1 140 SER 140 340 340 SER SER B . n B 1 141 GLU 141 341 341 GLU GLU B . n B 1 142 LYS 142 342 342 LYS LYS B . n B 1 143 GLY 143 343 343 GLY GLY B . n B 1 144 TYR 144 344 344 TYR TYR B . n B 1 145 ARG 145 345 345 ARG ARG B . n B 1 146 LYS 146 346 346 LYS LYS B . n B 1 147 TYR 147 347 347 TYR TYR B . n B 1 148 ASP 148 348 348 ASP ASP B . n B 1 149 LEU 149 349 349 LEU LEU B . n B 1 150 ASN 150 350 350 ASN ASN B . n B 1 151 HIS 151 351 351 HIS HIS B . n B 1 152 VAL 152 352 352 VAL VAL B . n B 1 153 LEU 153 353 353 LEU LEU B . n B 1 154 SER 154 354 354 SER SER B . n B 1 155 ILE 155 355 355 ILE ILE B . n B 1 156 ILE 156 356 356 ILE ILE B . n B 1 157 ASP 157 357 357 ASP ASP B . n B 1 158 LYS 158 358 358 LYS LYS B . n B 1 159 TRP 159 359 359 TRP TRP B . n B 1 160 ASP 160 360 360 ASP ASP B . n B 1 161 LEU 161 361 361 LEU LEU B . n B 1 162 GLY 162 362 362 GLY GLY B . n B 1 163 ARG 163 363 ? ? ? B . n B 1 164 ASN 164 364 ? ? ? B . n B 1 165 VAL 165 365 ? ? ? B . n B 1 166 SER 166 366 ? ? ? B . n B 1 167 THR 167 367 ? ? ? B . n B 1 168 SER 168 368 ? ? ? B . n B 1 169 LEU 169 369 ? ? ? B . n C 2 1 DC 1 490 490 DC DC C . n C 2 2 DT 2 491 491 DT DT C . n C 2 3 DG 3 492 492 DG DG C . n C 2 4 DA 4 493 493 DA DA C . n C 2 5 DC 5 494 494 DC DC C . n C 2 6 DT 6 495 495 DT DT C . n C 2 7 DC 7 496 496 DC DC C . n C 2 8 DT 8 497 497 DT DT C . n C 2 9 DC 9 498 498 DC DC C . n C 2 10 DT 10 499 499 DT DT C . n C 2 11 DT 11 500 500 DT DT C . n C 2 12 DA 12 501 501 DA DA C . n C 2 13 DA 13 502 502 DA DA C . n D 3 1 DG 1 503 503 DG DG D . n D 3 2 DG 2 504 504 DG DG D . n D 3 3 DT 3 505 505 DT DT D . n D 3 4 DA 4 506 506 DA DA D . n D 3 5 DG 5 507 507 DG DG D . n D 3 6 DC 6 508 508 DC DC D . n D 3 7 DC 7 509 509 DC DC D . n D 3 8 DA 8 510 510 DA DA D . n D 3 9 DA 9 511 511 DA DA D . n E 4 1 DT 1 601 601 DT DT E . n E 4 2 DT 2 602 602 DT DT E . n E 4 3 DG 3 603 603 DG DG E . n E 4 4 DG 4 604 604 DG DG E . n E 4 5 DC 5 605 605 DC DC E . n E 4 6 DT 6 606 606 DT DT E . n E 4 7 DA 7 607 607 DA DA E . n E 4 8 DC 8 608 608 DC DC E . n E 4 9 DC 9 609 609 DC DC E . n E 4 10 DT 10 610 610 DT DT E . n E 4 11 DT 11 611 611 DT DT E . n E 4 12 DA 12 612 612 DA DA E . n E 4 13 DA 13 613 613 DA DA E . n F 5 1 DG 1 614 614 DG DG F . n F 5 2 DA 2 615 615 DA DA F . n F 5 3 DG 3 616 616 DG DG F . n F 5 4 DA 4 617 617 DA DA F . n F 5 5 DG 5 618 618 DG DG F . n F 5 6 DT 6 619 619 DT DT F . n F 5 7 DC 7 620 620 DC DC F . n F 5 8 DA 8 621 621 DA DA F . n F 5 9 DG 9 622 622 DG DG F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 MG 1 702 702 MG MG A . H 6 MG 1 704 704 MG MG A . I 6 MG 1 701 701 MG MG B . J 6 MG 1 705 705 MG MG B . K 6 MG 1 703 703 MG MG C . L 7 EOH 1 801 801 EOH EOH D . M 7 EOH 1 803 803 EOH EOH E . N 7 EOH 1 802 802 EOH EOH F . O 8 HOH 1 1003 1003 HOH HOH A . O 8 HOH 2 1008 1008 HOH HOH A . O 8 HOH 3 1010 1010 HOH HOH A . O 8 HOH 4 1012 1012 HOH HOH A . O 8 HOH 5 1013 1013 HOH HOH A . O 8 HOH 6 1015 1015 HOH HOH A . O 8 HOH 7 1019 1019 HOH HOH A . O 8 HOH 8 1023 1023 HOH HOH A . O 8 HOH 9 1029 1029 HOH HOH A . O 8 HOH 10 1033 1033 HOH HOH A . O 8 HOH 11 1037 1037 HOH HOH A . O 8 HOH 12 1038 1038 HOH HOH A . O 8 HOH 13 1044 1044 HOH HOH A . O 8 HOH 14 1046 1046 HOH HOH A . O 8 HOH 15 1049 1049 HOH HOH A . O 8 HOH 16 1050 1050 HOH HOH A . O 8 HOH 17 1059 1059 HOH HOH A . O 8 HOH 18 1064 1064 HOH HOH A . O 8 HOH 19 1067 1067 HOH HOH A . O 8 HOH 20 1068 1068 HOH HOH A . O 8 HOH 21 1070 1070 HOH HOH A . O 8 HOH 22 1071 1071 HOH HOH A . O 8 HOH 23 1075 1075 HOH HOH A . O 8 HOH 24 1077 1077 HOH HOH A . O 8 HOH 25 1080 1080 HOH HOH A . O 8 HOH 26 1083 1083 HOH HOH A . O 8 HOH 27 1087 1087 HOH HOH A . O 8 HOH 28 1092 1092 HOH HOH A . O 8 HOH 29 1100 1100 HOH HOH A . O 8 HOH 30 1101 1101 HOH HOH A . O 8 HOH 31 1103 1103 HOH HOH A . O 8 HOH 32 1106 1106 HOH HOH A . O 8 HOH 33 1107 1107 HOH HOH A . O 8 HOH 34 1108 1108 HOH HOH A . O 8 HOH 35 1112 1112 HOH HOH A . O 8 HOH 36 1113 1113 HOH HOH A . P 8 HOH 1 1001 1001 HOH HOH B . P 8 HOH 2 1009 1009 HOH HOH B . P 8 HOH 3 1017 1017 HOH HOH B . P 8 HOH 4 1018 1018 HOH HOH B . P 8 HOH 5 1020 1020 HOH HOH B . P 8 HOH 6 1021 1021 HOH HOH B . P 8 HOH 7 1024 1024 HOH HOH B . P 8 HOH 8 1025 1025 HOH HOH B . P 8 HOH 9 1030 1030 HOH HOH B . P 8 HOH 10 1032 1032 HOH HOH B . P 8 HOH 11 1035 1035 HOH HOH B . P 8 HOH 12 1040 1040 HOH HOH B . P 8 HOH 13 1041 1041 HOH HOH B . P 8 HOH 14 1043 1043 HOH HOH B . P 8 HOH 15 1048 1048 HOH HOH B . P 8 HOH 16 1051 1051 HOH HOH B . P 8 HOH 17 1055 1055 HOH HOH B . P 8 HOH 18 1057 1057 HOH HOH B . P 8 HOH 19 1058 1058 HOH HOH B . P 8 HOH 20 1060 1060 HOH HOH B . P 8 HOH 21 1061 1061 HOH HOH B . P 8 HOH 22 1063 1063 HOH HOH B . P 8 HOH 23 1065 1065 HOH HOH B . P 8 HOH 24 1069 1069 HOH HOH B . P 8 HOH 25 1072 1072 HOH HOH B . P 8 HOH 26 1073 1073 HOH HOH B . P 8 HOH 27 1074 1074 HOH HOH B . P 8 HOH 28 1078 1078 HOH HOH B . P 8 HOH 29 1081 1081 HOH HOH B . P 8 HOH 30 1086 1086 HOH HOH B . P 8 HOH 31 1088 1088 HOH HOH B . P 8 HOH 32 1089 1089 HOH HOH B . P 8 HOH 33 1090 1090 HOH HOH B . P 8 HOH 34 1093 1093 HOH HOH B . P 8 HOH 35 1096 1096 HOH HOH B . P 8 HOH 36 1099 1099 HOH HOH B . P 8 HOH 37 1102 1102 HOH HOH B . P 8 HOH 38 1104 1104 HOH HOH B . P 8 HOH 39 1110 1110 HOH HOH B . P 8 HOH 40 1111 1111 HOH HOH B . Q 8 HOH 1 1002 1002 HOH HOH C . Q 8 HOH 2 1011 1011 HOH HOH C . Q 8 HOH 3 1016 1016 HOH HOH C . Q 8 HOH 4 1026 1026 HOH HOH C . Q 8 HOH 5 1027 1027 HOH HOH C . Q 8 HOH 6 1034 1034 HOH HOH C . Q 8 HOH 7 1036 1036 HOH HOH C . Q 8 HOH 8 1039 1039 HOH HOH C . Q 8 HOH 9 1053 1053 HOH HOH C . Q 8 HOH 10 1054 1054 HOH HOH C . Q 8 HOH 11 1066 1066 HOH HOH C . Q 8 HOH 12 1079 1079 HOH HOH C . Q 8 HOH 13 1084 1084 HOH HOH C . Q 8 HOH 14 1091 1091 HOH HOH C . Q 8 HOH 15 1095 1095 HOH HOH C . Q 8 HOH 16 1097 1097 HOH HOH C . Q 8 HOH 17 1098 1098 HOH HOH C . Q 8 HOH 18 1109 1109 HOH HOH C . R 8 HOH 1 1007 1007 HOH HOH D . R 8 HOH 2 1031 1031 HOH HOH D . R 8 HOH 3 1042 1042 HOH HOH D . S 8 HOH 1 1005 1005 HOH HOH E . S 8 HOH 2 1006 1006 HOH HOH E . S 8 HOH 3 1014 1014 HOH HOH E . S 8 HOH 4 1022 1022 HOH HOH E . S 8 HOH 5 1047 1047 HOH HOH E . S 8 HOH 6 1052 1052 HOH HOH E . S 8 HOH 7 1056 1056 HOH HOH E . S 8 HOH 8 1062 1062 HOH HOH E . S 8 HOH 9 1076 1076 HOH HOH E . S 8 HOH 10 1085 1085 HOH HOH E . S 8 HOH 11 1094 1094 HOH HOH E . S 8 HOH 12 1105 1105 HOH HOH E . T 8 HOH 1 1004 1004 HOH HOH F . T 8 HOH 2 1028 1028 HOH HOH F . T 8 HOH 3 1045 1045 HOH HOH F . T 8 HOH 4 1082 1082 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13460 ? 1 MORE -106 ? 1 'SSA (A^2)' 16740 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-03-12 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 3 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 4 SOLVE . ? ? ? ? phasing ? ? ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 DA _pdbx_validate_close_contact.auth_seq_id_1 502 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 MG _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 MG _pdbx_validate_close_contact.auth_seq_id_2 703 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 66 ? ? OE1 A GLU 66 ? ? 1.167 1.252 -0.085 0.011 N 2 1 CD A GLU 66 ? ? OE2 A GLU 66 ? ? 1.148 1.252 -0.104 0.011 N 3 1 CD B GLU 266 ? ? OE1 B GLU 266 ? ? 1.164 1.252 -0.088 0.011 N 4 1 CD B GLU 266 ? ? OE2 B GLU 266 ? ? 1.137 1.252 -0.115 0.011 N 5 1 C B GLU 266 ? ? O B GLU 266 ? ? 1.103 1.229 -0.126 0.019 N 6 1 P F DG 614 ? ? OP3 F DG 614 ? ? 1.525 1.607 -0.082 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OE1 A GLU 66 ? ? CD A GLU 66 ? ? OE2 A GLU 66 ? ? 114.02 123.30 -9.28 1.20 N 2 1 OE1 B GLU 266 ? ? CD B GLU 266 ? ? OE2 B GLU 266 ? ? 114.07 123.30 -9.23 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 95 ? ? -39.25 -39.41 2 1 ILE A 99 ? ? -102.14 -61.66 3 1 ASN B 248 ? ? -69.97 94.11 4 1 ALA B 254 ? ? -59.70 -70.39 5 1 ILE B 299 ? ? -105.23 -63.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A ARG 163 ? A ARG 163 5 1 Y 1 A ASN 164 ? A ASN 164 6 1 Y 1 A VAL 165 ? A VAL 165 7 1 Y 1 A SER 166 ? A SER 166 8 1 Y 1 A THR 167 ? A THR 167 9 1 Y 1 A SER 168 ? A SER 168 10 1 Y 1 A LEU 169 ? A LEU 169 11 1 Y 1 B MET 201 ? B MET 1 12 1 Y 1 B VAL 202 ? B VAL 2 13 1 Y 1 B HIS 203 ? B HIS 3 14 1 Y 1 B ARG 363 ? B ARG 163 15 1 Y 1 B ASN 364 ? B ASN 164 16 1 Y 1 B VAL 365 ? B VAL 165 17 1 Y 1 B SER 366 ? B SER 166 18 1 Y 1 B THR 367 ? B THR 167 19 1 Y 1 B SER 368 ? B SER 168 20 1 Y 1 B LEU 369 ? B LEU 169 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3E54 'double helix' 3E54 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 1 1_555 F DG 9 1_555 0.346 0.012 0.153 -6.994 -11.226 7.066 1 C_DC490:DG622_F C 490 ? F 622 ? 19 1 1 C DT 2 1_555 F DA 8 1_555 -0.319 0.088 0.319 -9.070 -9.753 0.745 2 C_DT491:DA621_F C 491 ? F 621 ? 20 1 1 C DG 3 1_555 F DC 7 1_555 -0.756 -0.454 -0.185 -16.058 -3.637 -0.740 3 C_DG492:DC620_F C 492 ? F 620 ? 19 1 1 C DA 4 1_555 F DT 6 1_555 0.452 -0.155 -0.204 -0.842 -8.171 -1.676 4 C_DA493:DT619_F C 493 ? F 619 ? 20 1 1 C DC 5 1_555 F DG 5 1_555 0.540 -0.154 0.028 3.911 -9.598 -0.556 5 C_DC494:DG618_F C 494 ? F 618 ? 19 1 1 C DT 6 1_555 F DA 4 1_555 -0.021 0.025 -0.183 7.065 -4.315 3.098 6 C_DT495:DA617_F C 495 ? F 617 ? 20 1 1 C DC 7 1_555 F DG 3 1_555 -0.468 -0.270 -0.187 7.267 -5.186 3.486 7 C_DC496:DG616_F C 496 ? F 616 ? 19 1 1 C DT 8 1_555 F DA 2 1_555 0.176 -0.254 0.069 8.176 -0.551 5.668 8 C_DT497:DA615_F C 497 ? F 615 ? 20 1 1 C DC 9 1_555 F DG 1 1_555 0.392 -0.118 -0.119 7.000 -6.279 5.192 9 C_DC498:DG614_F C 498 ? F 614 ? 19 1 1 C DT 10 1_555 E DA 13 1_555 0.061 -0.092 -0.270 8.023 -12.394 5.691 10 C_DT499:DA613_E C 499 ? E 613 ? 20 1 1 C DT 11 1_555 E DA 12 1_555 -0.108 -0.078 -0.036 3.761 1.365 3.790 11 C_DT500:DA612_E C 500 ? E 612 ? 20 1 1 C DA 12 1_555 E DT 11 1_555 0.078 -0.123 -0.063 -4.493 1.900 3.475 12 C_DA501:DT611_E C 501 ? E 611 ? 20 1 1 C DA 13 1_555 E DT 10 1_555 -0.058 -0.112 -0.244 -8.878 -11.174 5.894 13 C_DA502:DT610_E C 502 ? E 610 ? 20 1 1 D DG 1 1_555 E DC 9 1_555 -0.407 -0.153 -0.188 -6.040 -5.832 4.593 14 D_DG503:DC609_E D 503 ? E 609 ? 19 1 1 D DG 2 1_555 E DC 8 1_555 -0.066 -0.034 0.064 -11.494 1.154 11.124 15 D_DG504:DC608_E D 504 ? E 608 ? 19 1 1 D DT 3 1_555 E DA 7 1_555 -0.768 -0.278 0.008 -8.475 -2.982 4.566 16 D_DT505:DA607_E D 505 ? E 607 ? 20 1 1 D DA 4 1_555 E DT 6 1_555 0.052 -0.050 -0.106 -6.648 -3.919 2.188 17 D_DA506:DT606_E D 506 ? E 606 ? 20 1 1 D DG 5 1_555 E DC 5 1_555 -0.655 -0.101 0.023 -3.673 -8.849 0.669 18 D_DG507:DC605_E D 507 ? E 605 ? 19 1 1 D DC 6 1_555 E DG 4 1_555 -0.143 -0.181 -0.139 0.320 -6.709 3.080 19 D_DC508:DG604_E D 508 ? E 604 ? 19 1 1 D DC 7 1_555 E DG 3 1_555 0.519 -0.314 -0.176 15.376 -3.879 -0.051 20 D_DC509:DG603_E D 509 ? E 603 ? 19 1 1 D DA 8 1_555 E DT 2 1_555 0.465 0.102 0.308 9.784 -9.382 1.427 21 D_DA510:DT602_E D 510 ? E 602 ? 20 1 1 D DA 9 1_555 E DT 1 1_555 -0.206 -0.115 0.041 5.351 -12.660 3.247 22 D_DA511:DT601_E D 511 ? E 601 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 1 1_555 F DG 9 1_555 C DT 2 1_555 F DA 8 1_555 -0.565 -0.642 3.364 -0.842 3.108 33.530 -1.626 0.836 3.305 5.371 1.454 33.680 1 CC_DC490DT491:DA621DG622_FF C 490 ? F 622 ? C 491 ? F 621 ? 1 C DT 2 1_555 F DA 8 1_555 C DG 3 1_555 F DC 7 1_555 -0.394 0.096 3.407 0.325 -4.999 40.264 0.717 0.606 3.369 -7.227 -0.471 40.562 2 CC_DT491DG492:DC620DA621_FF C 491 ? F 621 ? C 492 ? F 620 ? 1 C DG 3 1_555 F DC 7 1_555 C DA 4 1_555 F DT 6 1_555 0.134 0.333 3.048 0.698 7.199 30.214 -0.685 -0.123 3.046 13.568 -1.316 31.048 3 CC_DG492DA493:DT619DC620_FF C 492 ? F 620 ? C 493 ? F 619 ? 1 C DA 4 1_555 F DT 6 1_555 C DC 5 1_555 F DG 5 1_555 -0.641 0.015 3.111 -5.386 0.686 33.407 -0.082 0.261 3.173 1.184 9.293 33.833 4 CC_DA493DC494:DG618DT619_FF C 493 ? F 619 ? C 494 ? F 618 ? 1 C DC 5 1_555 F DG 5 1_555 C DT 6 1_555 F DA 4 1_555 0.642 -0.772 3.263 1.003 -0.312 36.037 -1.204 -0.894 3.285 -0.504 -1.621 36.051 5 CC_DC494DT495:DA617DG618_FF C 494 ? F 618 ? C 495 ? F 617 ? 1 C DT 6 1_555 F DA 4 1_555 C DC 7 1_555 F DG 3 1_555 0.469 -1.218 3.453 -0.506 3.767 26.282 -3.673 -1.157 3.241 8.231 1.105 26.551 6 CC_DT495DC496:DG616DA617_FF C 495 ? F 617 ? C 496 ? F 616 ? 1 C DC 7 1_555 F DG 3 1_555 C DT 8 1_555 F DA 2 1_555 0.271 -0.898 3.526 -3.651 -4.104 38.487 -0.807 -0.890 3.560 -6.188 5.505 38.862 7 CC_DC496DT497:DA615DG616_FF C 496 ? F 616 ? C 497 ? F 615 ? 1 C DT 8 1_555 F DA 2 1_555 C DC 9 1_555 F DG 1 1_555 -0.471 -1.118 3.297 -0.159 1.554 31.029 -2.385 0.849 3.241 2.902 0.296 31.067 8 CC_DT497DC498:DG614DA615_FF C 497 ? F 615 ? C 498 ? F 614 ? 1 C DC 9 1_555 F DG 1 1_555 C DT 10 1_555 E DA 13 1_555 0.110 -0.717 3.332 0.172 2.446 35.731 -1.521 -0.154 3.277 3.981 -0.281 35.812 9 CC_DC498DT499:DA613DG614_EF C 498 ? F 614 ? C 499 ? E 613 ? 1 C DT 10 1_555 E DA 13 1_555 C DT 11 1_555 E DA 12 1_555 -0.789 -0.504 3.482 0.189 4.669 28.220 -2.134 1.643 3.351 9.494 -0.385 28.597 10 CC_DT499DT500:DA612DA613_EE C 499 ? E 613 ? C 500 ? E 612 ? 1 C DT 11 1_555 E DA 12 1_555 C DA 12 1_555 E DT 11 1_555 -0.029 2.457 5.219 -0.061 -50.167 52.353 4.523 0.022 2.348 -46.698 0.057 71.259 11 CC_DT500DA501:DT611DA612_EE C 500 ? E 612 ? C 501 ? E 611 ? 1 C DA 12 1_555 E DT 11 1_555 C DA 13 1_555 E DT 10 1_555 0.795 -0.495 3.485 -0.605 4.145 28.217 -1.999 -1.759 3.362 8.443 1.233 28.520 12 CC_DA501DA502:DT610DT611_EE C 501 ? E 611 ? C 502 ? E 610 ? 1 C DA 13 1_555 E DT 10 1_555 D DG 1 1_555 E DC 9 1_555 -0.133 -0.759 3.279 -0.015 3.159 35.514 -1.695 0.214 3.202 5.167 0.025 35.650 13 CD_DA502DG503:DC609DT610_EE C 502 ? E 610 ? D 503 ? E 609 ? 1 D DG 1 1_555 E DC 9 1_555 D DG 2 1_555 E DC 8 1_555 0.663 -1.163 3.451 -0.573 1.301 33.342 -2.251 -1.253 3.393 2.266 0.999 33.371 14 DD_DG503DG504:DC608DC609_EE D 503 ? E 609 ? D 504 ? E 608 ? 1 D DG 2 1_555 E DC 8 1_555 D DT 3 1_555 E DA 7 1_555 -0.383 -1.608 3.442 3.053 -3.605 29.347 -2.322 1.436 3.553 -7.059 -5.977 29.716 15 DD_DG504DT505:DA607DC608_EE D 504 ? E 608 ? D 505 ? E 607 ? 1 D DT 3 1_555 E DA 7 1_555 D DA 4 1_555 E DT 6 1_555 -0.132 -0.553 3.315 -0.390 3.703 33.769 -1.543 0.163 3.239 6.351 0.670 33.968 16 DD_DT505DA506:DT606DA607_EE D 505 ? E 607 ? D 506 ? E 606 ? 1 D DA 4 1_555 E DT 6 1_555 D DG 5 1_555 E DC 5 1_555 -0.619 -0.812 3.304 -0.743 -1.936 35.244 -1.047 0.909 3.354 -3.195 1.226 35.303 17 DD_DA506DG507:DC605DT606_EE D 506 ? E 606 ? D 507 ? E 605 ? 1 D DG 5 1_555 E DC 5 1_555 D DC 6 1_555 E DG 4 1_555 0.836 0.094 3.149 4.887 1.620 35.922 -0.072 -0.672 3.232 2.610 -7.874 36.277 18 DD_DG507DC508:DG604DC605_EE D 507 ? E 605 ? D 508 ? E 604 ? 1 D DC 6 1_555 E DG 4 1_555 D DC 7 1_555 E DG 3 1_555 -0.434 0.453 3.057 -0.355 5.970 27.759 -0.382 0.808 3.090 12.264 0.730 28.384 19 DD_DC508DC509:DG603DG604_EE D 508 ? E 604 ? D 509 ? E 603 ? 1 D DC 7 1_555 E DG 3 1_555 D DA 8 1_555 E DT 2 1_555 0.467 0.073 3.361 -0.323 -3.953 41.276 0.535 -0.696 3.336 -5.592 0.458 41.458 20 DD_DC509DA510:DT602DG603_EE D 509 ? E 603 ? D 510 ? E 602 ? 1 D DA 8 1_555 E DT 2 1_555 D DA 9 1_555 E DT 1 1_555 0.293 -0.622 3.442 1.306 2.714 33.414 -1.543 -0.284 3.392 4.709 -2.265 33.546 21 DD_DA510DA511:DT601DT602_EE D 510 ? E 602 ? D 511 ? E 601 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 6 'MAGNESIUM ION' MG 7 ETHANOL EOH 8 water HOH #