HEADER OXIDOREDUCTASE 14-AUG-08 3E5L TITLE CRYSTAL STRUCTURE OF CYP105P1 H72A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 (CYTOCHROME P450 HYDROXYLASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYP105P1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 33903; SOURCE 4 STRAIN: MA-4680; SOURCE 5 GENE: PTEC, SAV413, SAV_413; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-17B KEYWDS P450, OXIDOREDUCTASE, HEME, IRON, METAL-BINDING, MONOOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR L.H.XU,S.FUSHINOBU,H.IKEDA,T.WAKAGI,H.SHOUN REVDAT 5 01-NOV-23 3E5L 1 REMARK REVDAT 4 10-NOV-21 3E5L 1 REMARK SEQADV REVDAT 3 13-JUL-11 3E5L 1 VERSN REVDAT 2 10-FEB-09 3E5L 1 JRNL REVDAT 1 30-DEC-08 3E5L 0 JRNL AUTH L.H.XU,S.FUSHINOBU,H.IKEDA,T.WAKAGI,H.SHOUN JRNL TITL CRYSTAL STRUCTURES OF CYTOCHROME P450 105P1 FROM JRNL TITL 2 STREPTOMYCES AVERMITILIS: CONFORMATIONAL FLEXIBILITY AND JRNL TITL 3 HISTIDINE LIGATION STATE JRNL REF J.BACTERIOL. V. 191 1211 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19074393 JRNL DOI 10.1128/JB.01276-08 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 53.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3158 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4308 ; 2.186 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 7.692 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;36.755 ;23.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 504 ;19.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2442 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1590 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2144 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 238 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2023 ; 1.262 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3161 ; 1.994 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 3.317 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1145 ; 5.233 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5997 -13.6897 -32.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: -0.1073 REMARK 3 T33: 0.0044 T12: 0.1237 REMARK 3 T13: 0.0119 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 6.5756 L22: 4.1816 REMARK 3 L33: 2.6720 L12: 3.1787 REMARK 3 L13: -1.2414 L23: -2.2302 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: 0.1700 S13: -0.4508 REMARK 3 S21: -0.5149 S22: -0.0212 S23: -0.5072 REMARK 3 S31: 1.0003 S32: 0.4117 S33: 0.1361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1367 -10.1500 -15.1953 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: -0.0428 REMARK 3 T33: 0.0912 T12: 0.0028 REMARK 3 T13: -0.0399 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.1004 L22: 3.8121 REMARK 3 L33: 4.1301 L12: 0.4685 REMARK 3 L13: 0.0529 L23: 1.9950 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: -0.2117 S13: -0.0969 REMARK 3 S21: 0.5108 S22: 0.1831 S23: -0.4002 REMARK 3 S31: 0.4195 S32: 0.3132 S33: -0.3001 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 92 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0202 14.1341 -16.2268 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: -0.0059 REMARK 3 T33: 0.0853 T12: 0.0064 REMARK 3 T13: -0.0661 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.2317 L22: 1.9555 REMARK 3 L33: 3.3245 L12: 0.0537 REMARK 3 L13: 0.1195 L23: -0.0081 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.0040 S13: 0.1581 REMARK 3 S21: 0.1812 S22: -0.0686 S23: -0.1829 REMARK 3 S31: -0.2391 S32: 0.3525 S33: 0.1426 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5613 3.2961 -5.9433 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1969 REMARK 3 T33: 0.0194 T12: -0.0261 REMARK 3 T13: -0.1037 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 3.8966 L22: 11.6565 REMARK 3 L33: 2.5410 L12: -4.6719 REMARK 3 L13: -0.2889 L23: 0.0469 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: 0.3103 S13: -0.0254 REMARK 3 S21: -0.2752 S22: -0.2587 S23: -0.2429 REMARK 3 S31: 0.1430 S32: 0.5235 S33: 0.1818 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8713 9.2863 -19.6844 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.0386 REMARK 3 T33: 0.1459 T12: 0.0357 REMARK 3 T13: -0.0083 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.8585 L22: 1.3495 REMARK 3 L33: 3.6796 L12: -0.0340 REMARK 3 L13: -0.0168 L23: 0.1104 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.1132 S13: 0.0562 REMARK 3 S21: 0.2053 S22: -0.0129 S23: -0.0343 REMARK 3 S31: 0.0640 S32: 0.1153 S33: 0.0564 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 289 A 346 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3792 -4.8116 -26.0090 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.0000 REMARK 3 T33: 0.1079 T12: 0.0087 REMARK 3 T13: -0.0414 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.6866 L22: 2.3432 REMARK 3 L33: 1.7282 L12: 0.9392 REMARK 3 L13: -0.7511 L23: -1.0166 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: 0.0251 S13: 0.0073 REMARK 3 S21: 0.0034 S22: 0.0046 S23: 0.1375 REMARK 3 S31: 0.1784 S32: -0.1650 S33: -0.0866 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 347 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7906 6.5931 -30.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.0911 T22: 0.0327 REMARK 3 T33: 0.0673 T12: 0.0576 REMARK 3 T13: 0.0023 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 3.3053 L22: 1.7035 REMARK 3 L33: 3.1667 L12: -0.1230 REMARK 3 L13: -0.7071 L23: 0.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0829 S12: 0.2153 S13: -0.2641 REMARK 3 S21: -0.1968 S22: -0.0566 S23: -0.2940 REMARK 3 S31: 0.2449 S32: 0.5212 S33: 0.1395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : TRIANGULAR SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30777 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 48.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47200 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3E5J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.2M SODIUM FORMATE, PH8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.73650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.31750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.31750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.60475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.31750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.31750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.86825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.31750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.31750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 143.60475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.31750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.31750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.86825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.73650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 73 O ASP A 75 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1564 O HOH A 1578 5444 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 20 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 THR A 96 N - CA - CB ANGL. DEV. = 12.6 DEGREES REMARK 500 GLY A 134 N - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP A 219 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 VAL A 313 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 VAL A 313 CG1 - CB - CG2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 368 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 368 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 80 118.35 -21.54 REMARK 500 LEU A 87 -50.58 73.55 REMARK 500 THR A 96 -68.36 108.98 REMARK 500 PHE A 142 -62.58 -153.00 REMARK 500 VAL A 175 26.30 -140.63 REMARK 500 ASP A 219 -35.38 -168.67 REMARK 500 HIS A 239 -60.06 -95.17 REMARK 500 THR A 282 77.89 12.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 218 ASP A 219 -69.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1408 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 348 SG REMARK 620 2 HEM A1408 NA 99.6 REMARK 620 3 HEM A1408 NB 95.4 95.0 REMARK 620 4 HEM A1408 NC 86.1 173.6 81.6 REMARK 620 5 HEM A1408 ND 92.6 85.2 171.9 97.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E5J RELATED DB: PDB REMARK 900 RELATED ID: 3E5K RELATED DB: PDB DBREF 3E5L A 1 399 UNP Q93H81 Q93H81_STRAW 1 399 SEQADV 3E5L ALA A 72 UNP Q93H81 HIS 72 ENGINEERED MUTATION SEQADV 3E5L HIS A 400 UNP Q93H81 EXPRESSION TAG SEQADV 3E5L HIS A 401 UNP Q93H81 EXPRESSION TAG SEQADV 3E5L HIS A 402 UNP Q93H81 EXPRESSION TAG SEQADV 3E5L HIS A 403 UNP Q93H81 EXPRESSION TAG SEQRES 1 A 403 MET PRO GLU PRO THR ALA ASP ALA PRO THR VAL PRO LYS SEQRES 2 A 403 ALA ARG SER CYS PRO PHE LEU PRO PRO ASP GLY ILE ALA SEQRES 3 A 403 ASP ILE ARG ALA ALA ALA PRO VAL THR ARG ALA THR PHE SEQRES 4 A 403 THR SER GLY HIS GLU ALA TRP LEU VAL THR GLY TYR GLU SEQRES 5 A 403 GLU VAL ARG ALA LEU LEU ARG ASP SER SER PHE SER VAL SEQRES 6 A 403 GLN VAL PRO HIS ALA LEU ALA THR GLN ASP GLY VAL VAL SEQRES 7 A 403 THR GLN LYS PRO GLY ARG GLY SER LEU LEU TRP GLN ASP SEQRES 8 A 403 GLU PRO GLU HIS THR SER ASP ARG LYS LEU LEU ALA LYS SEQRES 9 A 403 GLU PHE THR VAL ARG ARG MET GLN ALA LEU ARG PRO ASN SEQRES 10 A 403 ILE GLN ARG ILE VAL ASP GLU HIS LEU ASP ALA ILE GLU SEQRES 11 A 403 ALA ARG GLY GLY PRO VAL ASP LEU VAL LYS THR PHE ALA SEQRES 12 A 403 ASN ALA VAL PRO SER MET VAL ILE SER ASP LEU PHE GLY SEQRES 13 A 403 VAL PRO VAL GLU ARG ARG ALA GLU PHE GLN ASP ILE ALA SEQRES 14 A 403 GLU ALA MET MET ARG VAL ASP GLN ASP ALA ALA ALA THR SEQRES 15 A 403 GLU ALA ALA GLY MET ARG LEU GLY GLY LEU LEU TYR GLN SEQRES 16 A 403 LEU VAL GLN GLU ARG ARG ALA ASN PRO GLY ASP ASP LEU SEQRES 17 A 403 ILE SER ALA LEU ILE THR THR GLU ASP PRO ASP GLY VAL SEQRES 18 A 403 VAL ASP ASP MET PHE LEU MET ASN ALA ALA GLY THR LEU SEQRES 19 A 403 LEU ILE ALA ALA HIS ASP THR THR ALA CYS MET ILE GLY SEQRES 20 A 403 LEU GLY THR ALA LEU LEU LEU ASP SER PRO ASP GLN LEU SEQRES 21 A 403 ALA LEU LEU ARG GLU ASP PRO SER LEU VAL GLY ASN ALA SEQRES 22 A 403 VAL GLU GLU LEU LEU ARG TYR LEU THR ILE GLY GLN PHE SEQRES 23 A 403 GLY GLY GLU ARG VAL ALA THR ARG ASP VAL GLU LEU GLY SEQRES 24 A 403 GLY VAL ARG ILE ALA LYS GLY GLU GLN VAL VAL ALA HIS SEQRES 25 A 403 VAL LEU ALA ALA ASP PHE ASP PRO ALA PHE VAL GLU GLU SEQRES 26 A 403 PRO GLU ARG PHE ASP ILE THR ARG ARG PRO ALA PRO HIS SEQRES 27 A 403 LEU ALA PHE GLY PHE GLY ALA HIS GLN CYS ILE GLY GLN SEQRES 28 A 403 GLN LEU ALA ARG ILE GLU LEU GLN ILE VAL PHE GLU THR SEQRES 29 A 403 LEU PHE ARG ARG LEU PRO GLY LEU ARG LEU ALA LYS PRO SEQRES 30 A 403 VAL GLU GLU LEU ARG PHE ARG HIS ASP MET VAL PHE TYR SEQRES 31 A 403 GLY VAL HIS GLU LEU PRO VAL THR TRP HIS HIS HIS HIS HET HEM A1408 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *225(H2 O) HELIX 1 1 GLY A 24 ALA A 32 1 9 HELIX 2 2 GLY A 50 ASP A 60 1 11 HELIX 3 3 PRO A 93 PHE A 106 1 14 HELIX 4 4 THR A 107 ALA A 113 1 7 HELIX 5 5 LEU A 114 GLY A 133 1 20 HELIX 6 6 LEU A 138 PHE A 142 1 5 HELIX 7 7 ASN A 144 PHE A 155 1 12 HELIX 8 8 PRO A 158 ARG A 174 1 17 HELIX 9 9 ASP A 178 ASN A 203 1 26 HELIX 10 10 ASP A 207 THR A 215 1 9 HELIX 11 11 ASP A 223 ASP A 255 1 33 HELIX 12 12 SER A 256 ASP A 266 1 11 HELIX 13 13 LEU A 269 THR A 282 1 14 HELIX 14 14 HIS A 312 ASP A 317 1 6 HELIX 15 15 PHE A 343 GLN A 347 5 5 HELIX 16 16 GLY A 350 LEU A 369 1 20 HELIX 17 17 PRO A 377 LEU A 381 5 5 SHEET 1 A 5 VAL A 34 THR A 38 0 SHEET 2 A 5 GLU A 44 VAL A 48 -1 O LEU A 47 N THR A 35 SHEET 3 A 5 GLN A 308 ALA A 311 1 O VAL A 310 N VAL A 48 SHEET 4 A 5 GLY A 288 ALA A 292 -1 N ARG A 290 O VAL A 309 SHEET 5 A 5 PHE A 63 SER A 64 -1 N SER A 64 O VAL A 291 SHEET 1 B 3 VAL A 136 ASP A 137 0 SHEET 2 B 3 PRO A 396 THR A 398 -1 O VAL A 397 N VAL A 136 SHEET 3 B 3 ARG A 373 LEU A 374 -1 N ARG A 373 O THR A 398 SHEET 1 C 2 VAL A 296 LEU A 298 0 SHEET 2 C 2 VAL A 301 ILE A 303 -1 O ILE A 303 N VAL A 296 LINK SG CYS A 348 FE HEM A1408 1555 1555 2.39 CISPEP 1 GLU A 92 PRO A 93 0 0.78 CISPEP 2 GLY A 133 GLY A 134 0 21.58 CISPEP 3 GLY A 134 PRO A 135 0 -10.37 SITE 1 AC1 21 LEU A 87 LEU A 88 HIS A 95 ARG A 99 SITE 2 AC1 21 PHE A 106 THR A 233 ALA A 237 ALA A 238 SITE 3 AC1 21 THR A 241 THR A 242 ARG A 290 ALA A 340 SITE 4 AC1 21 PHE A 341 ALA A 345 HIS A 346 CYS A 348 SITE 5 AC1 21 ILE A 349 GLY A 350 ALA A 354 HOH A1456 SITE 6 AC1 21 HOH A1494 CRYST1 88.635 88.635 191.473 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005223 0.00000