HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-AUG-08 3E61 TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REPRESSOR OF RIBOSE TITLE 2 OPERON FROM STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. SAPROPHYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REPRESSOR OF RIBOSE OPERON; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. SOURCE 3 SAPROPHYTICUS; SOURCE 4 ORGANISM_TAXID: 342451; SOURCE 5 STRAIN: ATCC 15305; SOURCE 6 GENE: SSP1396; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, TRANSCRIPTION, DNA-BINDING, TRANSCRIPTION KEYWDS 2 REGULATION, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,J.FREEMAN,K.T.BAIN,S.CHANG,R.ROMERO,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 3E61 1 REMARK REVDAT 6 10-FEB-21 3E61 1 AUTHOR JRNL REMARK REVDAT 5 14-NOV-18 3E61 1 AUTHOR REVDAT 4 25-OCT-17 3E61 1 REMARK REVDAT 3 13-JUL-11 3E61 1 VERSN REVDAT 2 24-FEB-09 3E61 1 VERSN REVDAT 1 26-AUG-08 3E61 0 JRNL AUTH J.B.BONANNO,J.FREEMAN,K.T.BAIN,S.CHANG,R.ROMERO,D.SMITH, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REPRESSOR OF JRNL TITL 2 RIBOSE OPERON FROM STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. JRNL TITL 3 SAPROPHYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.78000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.604 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3765 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5105 ; 1.542 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 5.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;39.528 ;25.060 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 616 ;16.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2793 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1797 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2608 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.277 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2445 ; 1.012 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3810 ; 1.650 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1469 ; 2.656 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1295 ; 3.925 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3E61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.749 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : 0.58700 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M SODIUM FORMATE, 275MM SODIUM REMARK 280 THIOCYANATE, PH 7.0, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.57300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.31700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.57300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.31700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS PROBABLE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -25.72926 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.14211 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 52 REMARK 465 SER A 53 REMARK 465 LEU A 54 REMARK 465 TYR A 55 REMARK 465 LYS A 56 REMARK 465 ARG A 57 REMARK 465 LYS A 58 REMARK 465 SER A 59 REMARK 465 LYS A 60 REMARK 465 HIS A 137 REMARK 465 ASN A 147 REMARK 465 ASN A 148 REMARK 465 GLU A 149 REMARK 465 HIS A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 ILE A 153 REMARK 465 SER A 154 REMARK 465 THR A 155 REMARK 465 GLN A 202 REMARK 465 ARG A 203 REMARK 465 ILE A 204 REMARK 465 GLY A 296 REMARK 465 LEU A 297 REMARK 465 ASN A 298 REMARK 465 THR A 299 REMARK 465 ASP A 300 REMARK 465 ASN A 301 REMARK 465 LEU A 302 REMARK 465 THR A 303 REMARK 465 ASN A 304 REMARK 465 ASN A 305 REMARK 465 HIS A 306 REMARK 465 LYS A 307 REMARK 465 GLN A 308 REMARK 465 LEU A 309 REMARK 465 GLU A 321 REMARK 465 GLY A 322 REMARK 465 MET B 52 REMARK 465 SER B 53 REMARK 465 LEU B 54 REMARK 465 TYR B 55 REMARK 465 LYS B 56 REMARK 465 ARG B 57 REMARK 465 LYS B 58 REMARK 465 SER B 59 REMARK 465 LYS B 60 REMARK 465 ARG B 145 REMARK 465 ILE B 146 REMARK 465 ASN B 147 REMARK 465 ASN B 148 REMARK 465 GLU B 149 REMARK 465 HIS B 150 REMARK 465 LEU B 297 REMARK 465 ASN B 298 REMARK 465 THR B 299 REMARK 465 ASP B 300 REMARK 465 ASN B 301 REMARK 465 LEU B 302 REMARK 465 THR B 303 REMARK 465 ASN B 304 REMARK 465 ASN B 305 REMARK 465 HIS B 306 REMARK 465 LYS B 307 REMARK 465 GLN B 308 REMARK 465 LEU B 309 REMARK 465 GLU B 321 REMARK 465 GLY B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 86 CG CD1 CD2 REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ASN A 115 CG OD1 ND2 REMARK 470 THR A 117 OG1 CG2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 THR A 132 OG1 CG2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 HIS A 323 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 98 CG OD1 OD2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 ASP B 135 CG OD1 OD2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 GLU B 166 CG CD OE1 OE2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 TYR B 197 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 201 CG CD OE1 NE2 REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 219 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 210 OE1 GLU B 210 2657 1.85 REMARK 500 O HOH B 362 O HOH B 362 2657 2.07 REMARK 500 O HOH A 379 O HOH A 379 2656 2.09 REMARK 500 OG SER A 228 OXT HIS A 328 2656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 119 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 251 13.46 87.94 REMARK 500 ASP A 264 -38.53 117.76 REMARK 500 SER B 121 -169.92 -160.16 REMARK 500 ILE B 153 -4.15 -147.49 REMARK 500 ASP B 264 -31.82 112.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11018W RELATED DB: TARGETDB DBREF 3E61 A 54 320 UNP Q49XF6 Q49XF6_STAS1 54 320 DBREF 3E61 B 54 320 UNP Q49XF6 Q49XF6_STAS1 54 320 SEQADV 3E61 MET A 52 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 SER A 53 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 GLU A 321 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 GLY A 322 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS A 323 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS A 324 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS A 325 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS A 326 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS A 327 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS A 328 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 MET B 52 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 SER B 53 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 GLU B 321 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 GLY B 322 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS B 323 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS B 324 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS B 325 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS B 326 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS B 327 UNP Q49XF6 EXPRESSION TAG SEQADV 3E61 HIS B 328 UNP Q49XF6 EXPRESSION TAG SEQRES 1 A 277 MET SER LEU TYR LYS ARG LYS SER LYS LEU ILE GLY LEU SEQRES 2 A 277 LEU LEU PRO ASP MET SER ASN PRO PHE PHE THR LEU ILE SEQRES 3 A 277 ALA ARG GLY VAL GLU ASP VAL ALA LEU ALA HIS GLY TYR SEQRES 4 A 277 GLN VAL LEU ILE GLY ASN SER ASP ASN ASP ILE LYS LYS SEQRES 5 A 277 ALA GLN GLY TYR LEU ALA THR PHE VAL SER HIS ASN CYS SEQRES 6 A 277 THR GLY MET ILE SER THR ALA PHE ASN GLU ASN ILE ILE SEQRES 7 A 277 GLU ASN THR LEU THR ASP HIS HIS ILE PRO PHE VAL PHE SEQRES 8 A 277 ILE ASP ARG ILE ASN ASN GLU HIS ASN GLY ILE SER THR SEQRES 9 A 277 ASN HIS PHE LYS GLY GLY GLN LEU GLN ALA GLU VAL VAL SEQRES 10 A 277 ARG LYS GLY LYS GLY LYS ASN VAL LEU ILE VAL HIS GLU SEQRES 11 A 277 ASN LEU LEU ILE ASP ALA PHE HIS GLN ARG VAL GLN GLY SEQRES 12 A 277 ILE LYS TYR ILE LEU ASP GLN GLN ARG ILE ASP TYR LYS SEQRES 13 A 277 MET LEU GLU ALA THR LEU LEU ASP ASN ASP LYS LYS PHE SEQRES 14 A 277 ILE ASP LEU ILE LYS GLU LEU SER ILE ASP SER ILE ILE SEQRES 15 A 277 CYS SER ASN ASP LEU LEU ALA ILE ASN VAL LEU GLY ILE SEQRES 16 A 277 VAL GLN ARG TYR HIS PHE LYS VAL PRO ALA GLU ILE GLN SEQRES 17 A 277 ILE ILE GLY TYR ASP ASN ILE PRO PHE SER GLU MET THR SEQRES 18 A 277 TYR PRO GLN ILE THR THR ILE ASP GLN SER ALA TYR HIS SEQRES 19 A 277 LEU GLY GLU ILE ALA VAL SER GLN LEU LEU GLY LEU ASN SEQRES 20 A 277 THR ASP ASN LEU THR ASN ASN HIS LYS GLN LEU ALA LEU SEQRES 21 A 277 THR VAL LYS HIS ARG GLY SER THR ARG GLU GLY HIS HIS SEQRES 22 A 277 HIS HIS HIS HIS SEQRES 1 B 277 MET SER LEU TYR LYS ARG LYS SER LYS LEU ILE GLY LEU SEQRES 2 B 277 LEU LEU PRO ASP MET SER ASN PRO PHE PHE THR LEU ILE SEQRES 3 B 277 ALA ARG GLY VAL GLU ASP VAL ALA LEU ALA HIS GLY TYR SEQRES 4 B 277 GLN VAL LEU ILE GLY ASN SER ASP ASN ASP ILE LYS LYS SEQRES 5 B 277 ALA GLN GLY TYR LEU ALA THR PHE VAL SER HIS ASN CYS SEQRES 6 B 277 THR GLY MET ILE SER THR ALA PHE ASN GLU ASN ILE ILE SEQRES 7 B 277 GLU ASN THR LEU THR ASP HIS HIS ILE PRO PHE VAL PHE SEQRES 8 B 277 ILE ASP ARG ILE ASN ASN GLU HIS ASN GLY ILE SER THR SEQRES 9 B 277 ASN HIS PHE LYS GLY GLY GLN LEU GLN ALA GLU VAL VAL SEQRES 10 B 277 ARG LYS GLY LYS GLY LYS ASN VAL LEU ILE VAL HIS GLU SEQRES 11 B 277 ASN LEU LEU ILE ASP ALA PHE HIS GLN ARG VAL GLN GLY SEQRES 12 B 277 ILE LYS TYR ILE LEU ASP GLN GLN ARG ILE ASP TYR LYS SEQRES 13 B 277 MET LEU GLU ALA THR LEU LEU ASP ASN ASP LYS LYS PHE SEQRES 14 B 277 ILE ASP LEU ILE LYS GLU LEU SER ILE ASP SER ILE ILE SEQRES 15 B 277 CYS SER ASN ASP LEU LEU ALA ILE ASN VAL LEU GLY ILE SEQRES 16 B 277 VAL GLN ARG TYR HIS PHE LYS VAL PRO ALA GLU ILE GLN SEQRES 17 B 277 ILE ILE GLY TYR ASP ASN ILE PRO PHE SER GLU MET THR SEQRES 18 B 277 TYR PRO GLN ILE THR THR ILE ASP GLN SER ALA TYR HIS SEQRES 19 B 277 LEU GLY GLU ILE ALA VAL SER GLN LEU LEU GLY LEU ASN SEQRES 20 B 277 THR ASP ASN LEU THR ASN ASN HIS LYS GLN LEU ALA LEU SEQRES 21 B 277 THR VAL LYS HIS ARG GLY SER THR ARG GLU GLY HIS HIS SEQRES 22 B 277 HIS HIS HIS HIS HET GOL A 1 6 HET GOL B 1 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *119(H2 O) HELIX 1 1 ASN A 71 HIS A 88 1 18 HELIX 2 2 ASP A 100 HIS A 114 1 15 HELIX 3 3 THR A 122 PHE A 124 5 3 HELIX 4 4 ASN A 125 HIS A 136 1 12 HELIX 5 5 ASP A 144 ILE A 146 5 3 HELIX 6 6 ASN A 156 GLY A 171 1 16 HELIX 7 7 ILE A 185 GLN A 201 1 17 HELIX 8 8 THR A 212 ASP A 215 5 4 HELIX 9 9 ASN A 216 SER A 228 1 13 HELIX 10 10 ASN A 236 TYR A 250 1 15 HELIX 11 11 ILE A 266 MET A 271 5 6 HELIX 12 12 SER A 282 LEU A 295 1 14 HELIX 13 13 ASN B 71 HIS B 88 1 18 HELIX 14 14 ASP B 100 HIS B 114 1 15 HELIX 15 15 THR B 122 PHE B 124 5 3 HELIX 16 16 ASN B 125 HIS B 136 1 12 HELIX 17 17 ASN B 156 GLY B 171 1 16 HELIX 18 18 ILE B 185 GLN B 202 1 18 HELIX 19 19 THR B 212 ASP B 215 5 4 HELIX 20 20 ASN B 216 LEU B 227 1 12 HELIX 21 21 ASN B 236 TYR B 250 1 15 HELIX 22 22 ILE B 266 MET B 271 5 6 HELIX 23 23 SER B 282 GLY B 296 1 15 SHEET 1 A 4 VAL A 92 ASN A 96 0 SHEET 2 A 4 ILE A 62 LEU A 66 1 N ILE A 62 O LEU A 93 SHEET 3 A 4 GLY A 118 SER A 121 1 O ILE A 120 N GLY A 63 SHEET 4 A 4 PHE A 140 PHE A 142 1 O VAL A 141 N SER A 121 SHEET 1 B 4 TYR A 206 GLU A 210 0 SHEET 2 B 4 VAL A 176 HIS A 180 1 N ILE A 178 O LYS A 207 SHEET 3 B 4 SER A 231 CYS A 234 1 O ILE A 233 N LEU A 177 SHEET 4 B 4 GLN A 259 ILE A 261 1 O GLN A 259 N ILE A 232 SHEET 1 C 2 THR A 278 ASP A 280 0 SHEET 2 C 2 THR A 312 LYS A 314 -1 O LYS A 314 N THR A 278 SHEET 1 D 4 VAL B 92 ASN B 96 0 SHEET 2 D 4 ILE B 62 LEU B 66 1 N LEU B 64 O LEU B 93 SHEET 3 D 4 GLY B 118 SER B 121 1 O ILE B 120 N LEU B 65 SHEET 4 D 4 PHE B 140 PHE B 142 1 O VAL B 141 N MET B 119 SHEET 1 E 4 ASP B 205 GLU B 210 0 SHEET 2 E 4 ASN B 175 HIS B 180 1 N ILE B 178 O LEU B 209 SHEET 3 E 4 SER B 231 CYS B 234 1 O SER B 231 N LEU B 177 SHEET 4 E 4 GLN B 259 ILE B 261 1 O ILE B 261 N CYS B 234 SHEET 1 F 2 THR B 278 ASP B 280 0 SHEET 2 F 2 THR B 312 LYS B 314 -1 O THR B 312 N ASP B 280 CISPEP 1 VAL A 254 PRO A 255 0 9.53 CISPEP 2 TYR A 273 PRO A 274 0 -1.44 CISPEP 3 VAL B 254 PRO B 255 0 0.61 CISPEP 4 TYR B 273 PRO B 274 0 -0.23 SITE 1 AC1 7 ASN A 71 PHE A 73 PHE A 188 ARG A 191 SITE 2 AC1 7 ASN A 236 ASP A 264 GLN A 281 SITE 1 AC2 8 ASN B 71 PHE B 73 PHE B 188 ARG B 191 SITE 2 AC2 8 ASN B 236 ASP B 264 GLN B 281 HOH B 343 CRYST1 81.146 106.634 68.183 90.00 112.17 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012324 0.000000 0.005020 0.00000 SCALE2 0.000000 0.009378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015837 0.00000