HEADER OXIDOREDUCTASE 14-AUG-08 3E65 TITLE MURINE INOS DIMER WITH HEME, PTERIN AND INHIBITOR AR-C120011 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC OXIDE SYNTHASE, INDUCIBLE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: OXYGENASE DOMAIN (UNP RESIDUES 77-496); COMPND 5 SYNONYM: INDUCIBLE NO SYNTHASE, INDUCIBLE NOS, INOS, NOS TYPE II, COMPND 6 MACROPHAGE NOS, MAC-NOS; COMPND 7 EC: 1.14.13.39; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NOS2, INOSL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMER, INDUCIBLE NITRIC OXIDE SYNTHASE, CALMODULIN-BINDING, FAD, FMN, KEYWDS 2 HEME, IRON, METAL-BINDING, NADP, OXIDOREDUCTASE, POLYMORPHISM, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR R.J.ROSENFELD,E.D.GARCIN,E.D.GETZOFF REVDAT 4 30-AUG-23 3E65 1 REMARK REVDAT 3 25-OCT-17 3E65 1 REMARK REVDAT 2 20-JAN-09 3E65 1 JRNL VERSN REVDAT 1 07-OCT-08 3E65 0 JRNL AUTH E.D.GARCIN,A.S.ARVAI,R.J.ROSENFELD,M.D.KROEGER,B.R.CRANE, JRNL AUTH 2 G.ANDERSSON,G.ANDREWS,P.J.HAMLEY,P.R.MALLINDER,D.J.NICHOLLS, JRNL AUTH 3 S.A.ST-GALLAY,A.C.TINKER,N.P.GENSMANTEL,A.METE,D.R.CHESHIRE, JRNL AUTH 4 S.CONNOLLY,D.J.STUEHR,A.ABERG,A.V.WALLACE,J.A.TAINER, JRNL AUTH 5 E.D.GETZOFF JRNL TITL ANCHORED PLASTICITY OPENS DOORS FOR SELECTIVE INHIBITOR JRNL TITL 2 DESIGN IN NITRIC OXIDE SYNTHASE. JRNL REF NAT.CHEM.BIOL. V. 4 700 2008 JRNL REFN ISSN 1552-4450 JRNL PMID 18849972 JRNL DOI 10.1038/NCHEMBIO.115 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4483118.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 93821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4724 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 13380 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 722 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.33000 REMARK 3 B22 (A**2) : -9.33000 REMARK 3 B33 (A**2) : 18.66000 REMARK 3 B12 (A**2) : -2.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.130 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.800 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.780 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 20.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : TOPHCSDX.PRO REMARK 3 PARAMETER FILE 2 : TOPH19.SOL REMARK 3 PARAMETER FILE 3 : TOPH19X.HEME REMARK 3 PARAMETER FILE 4 : YELLOW.TOP REMARK 3 PARAMETER FILE 5 : MISC.TOP REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PARHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : PARAM19.SOL REMARK 3 TOPOLOGY FILE 3 : PARAM19X.HEME REMARK 3 TOPOLOGY FILE 4 : YELLOW.PAR REMARK 3 TOPOLOGY FILE 5 : MISC.PAR REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DF1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES, 5% BOG, 25% LI2SO4, PH REMARK 280 6.00, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.00833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.01667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.51250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.52083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.50417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.00833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.01667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 97.52083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.51250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.50417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 213.93500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.51250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 320.90250 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 185.27314 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 195.04167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 66 REMARK 465 ASP A 67 REMARK 465 LYS A 68 REMARK 465 LEU A 69 REMARK 465 HIS A 70 REMARK 465 VAL A 71 REMARK 465 THR A 72 REMARK 465 SER A 73 REMARK 465 THR A 74 REMARK 465 ARG A 75 REMARK 465 PRO A 76 REMARK 465 CYS A 104 REMARK 465 LYS A 105 REMARK 465 SER A 106 REMARK 465 LYS A 107 REMARK 465 GLU A 498 REMARK 465 LEU B 66 REMARK 465 ASP B 67 REMARK 465 LYS B 68 REMARK 465 LEU B 69 REMARK 465 HIS B 70 REMARK 465 VAL B 71 REMARK 465 THR B 72 REMARK 465 SER B 73 REMARK 465 THR B 74 REMARK 465 ARG B 75 REMARK 465 PRO B 76 REMARK 465 GLU B 498 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 ASN A 497 CG OD1 ND2 REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 GLN B 496 CG CD OE1 NE2 REMARK 470 ASN B 497 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 102 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 100 129.53 60.36 REMARK 500 PHE A 102 -48.07 84.68 REMARK 500 ASN A 115 69.79 -117.99 REMARK 500 THR A 172 -166.53 -166.32 REMARK 500 SER A 245 -81.58 -96.28 REMARK 500 CYS A 361 72.23 -155.99 REMARK 500 ARG A 382 -128.84 -120.01 REMARK 500 ARG A 448 19.91 -141.47 REMARK 500 CYS A 451 106.30 -161.56 REMARK 500 LEU A 479 -165.29 -102.98 REMARK 500 GLN A 496 -65.67 -93.78 REMARK 500 LYS B 105 -114.99 -62.86 REMARK 500 LYS B 107 -4.50 -141.78 REMARK 500 LEU B 110 37.99 -96.59 REMARK 500 ASN B 115 70.08 -118.62 REMARK 500 THR B 172 -168.77 -160.97 REMARK 500 SER B 212 -28.31 -142.19 REMARK 500 SER B 245 -78.80 -101.50 REMARK 500 CYS B 361 73.66 -160.02 REMARK 500 ARG B 382 -129.07 -118.86 REMARK 500 ASN B 384 58.92 39.97 REMARK 500 LEU B 479 -162.14 -100.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 108 14.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 194 SG REMARK 620 2 HEM A 901 NA 101.6 REMARK 620 3 HEM A 901 NB 98.3 87.4 REMARK 620 4 HEM A 901 NC 103.7 154.6 89.0 REMARK 620 5 HEM A 901 ND 102.4 86.9 159.2 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 194 SG REMARK 620 2 HEM B 901 NA 104.4 REMARK 620 3 HEM B 901 NB 99.0 87.4 REMARK 620 4 HEM B 901 NC 98.3 157.3 89.8 REMARK 620 5 HEM B 901 ND 99.3 87.9 161.7 87.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4B A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XXZ A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H4B B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XXZ B 907 DBREF 3E65 A 66 498 UNP P29477 NOS2_MOUSE 66 498 DBREF 3E65 B 66 498 UNP P29477 NOS2_MOUSE 66 498 SEQRES 1 A 433 LEU ASP LYS LEU HIS VAL THR SER THR ARG PRO GLN TYR SEQRES 2 A 433 VAL ARG ILE LYS ASN TRP GLY SER GLY GLU ILE LEU HIS SEQRES 3 A 433 ASP THR LEU HIS HIS LYS ALA THR SER ASP PHE THR CYS SEQRES 4 A 433 LYS SER LYS SER CYS LEU GLY SER ILE MET ASN PRO LYS SEQRES 5 A 433 SER LEU THR ARG GLY PRO ARG ASP LYS PRO THR PRO LEU SEQRES 6 A 433 GLU GLU LEU LEU PRO HIS ALA ILE GLU PHE ILE ASN GLN SEQRES 7 A 433 TYR TYR GLY SER PHE LYS GLU ALA LYS ILE GLU GLU HIS SEQRES 8 A 433 LEU ALA ARG LEU GLU ALA VAL THR LYS GLU ILE GLU THR SEQRES 9 A 433 THR GLY THR TYR GLN LEU THR LEU ASP GLU LEU ILE PHE SEQRES 10 A 433 ALA THR LYS MET ALA TRP ARG ASN ALA PRO ARG CYS ILE SEQRES 11 A 433 GLY ARG ILE GLN TRP SER ASN LEU GLN VAL PHE ASP ALA SEQRES 12 A 433 ARG ASN CYS SER THR ALA GLN GLU MET PHE GLN HIS ILE SEQRES 13 A 433 CYS ARG HIS ILE LEU TYR ALA THR ASN ASN GLY ASN ILE SEQRES 14 A 433 ARG SER ALA ILE THR VAL PHE PRO GLN ARG SER ASP GLY SEQRES 15 A 433 LYS HIS ASP PHE ARG LEU TRP ASN SER GLN LEU ILE ARG SEQRES 16 A 433 TYR ALA GLY TYR GLN MET PRO ASP GLY THR ILE ARG GLY SEQRES 17 A 433 ASP ALA ALA THR LEU GLU PHE THR GLN LEU CYS ILE ASP SEQRES 18 A 433 LEU GLY TRP LYS PRO ARG TYR GLY ARG PHE ASP VAL LEU SEQRES 19 A 433 PRO LEU VAL LEU GLN ALA ASP GLY GLN ASP PRO GLU VAL SEQRES 20 A 433 PHE GLU ILE PRO PRO ASP LEU VAL LEU GLU VAL THR MET SEQRES 21 A 433 GLU HIS PRO LYS TYR GLU TRP PHE GLN GLU LEU GLY LEU SEQRES 22 A 433 LYS TRP TYR ALA LEU PRO ALA VAL ALA ASN MET LEU LEU SEQRES 23 A 433 GLU VAL GLY GLY LEU GLU PHE PRO ALA CYS PRO PHE ASN SEQRES 24 A 433 GLY TRP TYR MET GLY THR GLU ILE GLY VAL ARG ASP PHE SEQRES 25 A 433 CYS ASP THR GLN ARG TYR ASN ILE LEU GLU GLU VAL GLY SEQRES 26 A 433 ARG ARG MET GLY LEU GLU THR HIS THR LEU ALA SER LEU SEQRES 27 A 433 TRP LYS ASP ARG ALA VAL THR GLU ILE ASN VAL ALA VAL SEQRES 28 A 433 LEU HIS SER PHE GLN LYS GLN ASN VAL THR ILE MET ASP SEQRES 29 A 433 HIS HIS THR ALA SER GLU SER PHE MET LYS HIS MET GLN SEQRES 30 A 433 ASN GLU TYR ARG ALA ARG GLY GLY CYS PRO ALA ASP TRP SEQRES 31 A 433 ILE TRP LEU VAL PRO PRO VAL SER GLY SER ILE THR PRO SEQRES 32 A 433 VAL PHE HIS GLN GLU MET LEU ASN TYR VAL LEU SER PRO SEQRES 33 A 433 PHE TYR TYR TYR GLN ILE GLU PRO TRP LYS THR HIS ILE SEQRES 34 A 433 TRP GLN ASN GLU SEQRES 1 B 433 LEU ASP LYS LEU HIS VAL THR SER THR ARG PRO GLN TYR SEQRES 2 B 433 VAL ARG ILE LYS ASN TRP GLY SER GLY GLU ILE LEU HIS SEQRES 3 B 433 ASP THR LEU HIS HIS LYS ALA THR SER ASP PHE THR CYS SEQRES 4 B 433 LYS SER LYS SER CYS LEU GLY SER ILE MET ASN PRO LYS SEQRES 5 B 433 SER LEU THR ARG GLY PRO ARG ASP LYS PRO THR PRO LEU SEQRES 6 B 433 GLU GLU LEU LEU PRO HIS ALA ILE GLU PHE ILE ASN GLN SEQRES 7 B 433 TYR TYR GLY SER PHE LYS GLU ALA LYS ILE GLU GLU HIS SEQRES 8 B 433 LEU ALA ARG LEU GLU ALA VAL THR LYS GLU ILE GLU THR SEQRES 9 B 433 THR GLY THR TYR GLN LEU THR LEU ASP GLU LEU ILE PHE SEQRES 10 B 433 ALA THR LYS MET ALA TRP ARG ASN ALA PRO ARG CYS ILE SEQRES 11 B 433 GLY ARG ILE GLN TRP SER ASN LEU GLN VAL PHE ASP ALA SEQRES 12 B 433 ARG ASN CYS SER THR ALA GLN GLU MET PHE GLN HIS ILE SEQRES 13 B 433 CYS ARG HIS ILE LEU TYR ALA THR ASN ASN GLY ASN ILE SEQRES 14 B 433 ARG SER ALA ILE THR VAL PHE PRO GLN ARG SER ASP GLY SEQRES 15 B 433 LYS HIS ASP PHE ARG LEU TRP ASN SER GLN LEU ILE ARG SEQRES 16 B 433 TYR ALA GLY TYR GLN MET PRO ASP GLY THR ILE ARG GLY SEQRES 17 B 433 ASP ALA ALA THR LEU GLU PHE THR GLN LEU CYS ILE ASP SEQRES 18 B 433 LEU GLY TRP LYS PRO ARG TYR GLY ARG PHE ASP VAL LEU SEQRES 19 B 433 PRO LEU VAL LEU GLN ALA ASP GLY GLN ASP PRO GLU VAL SEQRES 20 B 433 PHE GLU ILE PRO PRO ASP LEU VAL LEU GLU VAL THR MET SEQRES 21 B 433 GLU HIS PRO LYS TYR GLU TRP PHE GLN GLU LEU GLY LEU SEQRES 22 B 433 LYS TRP TYR ALA LEU PRO ALA VAL ALA ASN MET LEU LEU SEQRES 23 B 433 GLU VAL GLY GLY LEU GLU PHE PRO ALA CYS PRO PHE ASN SEQRES 24 B 433 GLY TRP TYR MET GLY THR GLU ILE GLY VAL ARG ASP PHE SEQRES 25 B 433 CYS ASP THR GLN ARG TYR ASN ILE LEU GLU GLU VAL GLY SEQRES 26 B 433 ARG ARG MET GLY LEU GLU THR HIS THR LEU ALA SER LEU SEQRES 27 B 433 TRP LYS ASP ARG ALA VAL THR GLU ILE ASN VAL ALA VAL SEQRES 28 B 433 LEU HIS SER PHE GLN LYS GLN ASN VAL THR ILE MET ASP SEQRES 29 B 433 HIS HIS THR ALA SER GLU SER PHE MET LYS HIS MET GLN SEQRES 30 B 433 ASN GLU TYR ARG ALA ARG GLY GLY CYS PRO ALA ASP TRP SEQRES 31 B 433 ILE TRP LEU VAL PRO PRO VAL SER GLY SER ILE THR PRO SEQRES 32 B 433 VAL PHE HIS GLN GLU MET LEU ASN TYR VAL LEU SER PRO SEQRES 33 B 433 PHE TYR TYR TYR GLN ILE GLU PRO TRP LYS THR HIS ILE SEQRES 34 B 433 TRP GLN ASN GLU HET HEM A 901 43 HET H4B A 902 17 HET XXZ A 906 27 HET HEM B 901 43 HET H4B B 902 17 HET XXZ B 907 27 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM H4B 5,6,7,8-TETRAHYDROBIOPTERIN HETNAM XXZ 1-[4-(AMINOMETHYL)BENZOYL]-5'-FLUORO-1'H- HETNAM 2 XXZ SPIRO[PIPERIDINE-4,2'-QUINAZOLIN]-4'-AMINE HETSYN HEM HEME HETSYN XXZ AR-C120011 FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 H4B 2(C9 H15 N5 O3) FORMUL 5 XXZ 2(C20 H22 F N5 O) FORMUL 9 HOH *149(H2 O) HELIX 1 1 THR A 93 ALA A 98 5 6 HELIX 2 2 PRO A 116 THR A 120 5 5 HELIX 3 3 PRO A 129 GLY A 146 1 18 HELIX 4 4 LYS A 152 GLY A 171 1 20 HELIX 5 5 THR A 176 ASN A 190 1 15 HELIX 6 6 GLY A 196 TRP A 200 5 5 HELIX 7 7 THR A 213 ASN A 230 1 18 HELIX 8 8 ASN A 231 ASN A 233 5 3 HELIX 9 9 THR A 277 LEU A 287 1 11 HELIX 10 10 PRO A 316 VAL A 320 5 5 HELIX 11 11 TYR A 330 GLY A 337 5 8 HELIX 12 12 GLY A 369 VAL A 374 1 6 HELIX 13 13 VAL A 374 ASP A 379 1 6 HELIX 14 14 ILE A 385 MET A 393 1 9 HELIX 15 15 THR A 399 SER A 402 5 4 HELIX 16 16 LEU A 403 GLN A 423 1 21 HELIX 17 17 ASP A 429 GLY A 449 1 21 HELIX 18 18 ASP A 454 VAL A 459 1 6 HELIX 19 19 SER A 463 GLN A 472 5 10 HELIX 20 20 GLU A 488 HIS A 493 1 6 HELIX 21 21 THR B 93 ALA B 98 5 6 HELIX 22 22 PRO B 116 THR B 120 5 5 HELIX 23 23 PRO B 129 GLY B 146 1 18 HELIX 24 24 LYS B 152 GLY B 171 1 20 HELIX 25 25 THR B 176 ASN B 190 1 15 HELIX 26 26 GLY B 196 TRP B 200 5 5 HELIX 27 27 THR B 213 ASN B 230 1 18 HELIX 28 28 ASN B 231 ASN B 233 5 3 HELIX 29 29 THR B 277 LEU B 287 1 11 HELIX 30 30 PRO B 316 VAL B 320 5 5 HELIX 31 31 TYR B 330 GLY B 337 5 8 HELIX 32 32 GLY B 369 VAL B 374 1 6 HELIX 33 33 VAL B 374 ASP B 379 1 6 HELIX 34 34 ILE B 385 MET B 393 1 9 HELIX 35 35 THR B 399 SER B 402 5 4 HELIX 36 36 LEU B 403 GLN B 423 1 21 HELIX 37 37 ASP B 429 GLY B 449 1 21 HELIX 38 38 ASP B 454 VAL B 459 1 6 HELIX 39 39 SER B 463 GLN B 472 5 10 HELIX 40 40 GLU B 488 HIS B 493 1 6 SHEET 1 A 2 VAL A 79 LYS A 82 0 SHEET 2 A 2 ILE A 89 ASP A 92 -1 O ASP A 92 N VAL A 79 SHEET 1 B 4 GLN A 204 ASP A 207 0 SHEET 2 B 4 ALA A 237 VAL A 240 1 O ILE A 238 N PHE A 206 SHEET 3 B 4 PHE A 363 ASN A 364 -1 O ASN A 364 N ALA A 237 SHEET 4 B 4 ALA A 345 VAL A 346 -1 N VAL A 346 O PHE A 363 SHEET 1 C 3 ARG A 252 LEU A 253 0 SHEET 2 C 3 LEU A 301 GLN A 304 -1 O GLN A 304 N ARG A 252 SHEET 3 C 3 GLU A 311 PHE A 313 -1 O GLU A 311 N LEU A 303 SHEET 1 D 2 GLY A 263 GLN A 265 0 SHEET 2 D 2 ILE A 271 GLY A 273 -1 O ARG A 272 N TYR A 264 SHEET 1 E 2 GLU A 322 THR A 324 0 SHEET 2 E 2 LYS A 339 TYR A 341 -1 O TRP A 340 N VAL A 323 SHEET 1 F 3 LEU A 356 PHE A 358 0 SHEET 2 F 3 LEU A 350 VAL A 353 -1 N VAL A 353 O LEU A 356 SHEET 3 F 3 PHE A 482 TYR A 484 -1 O TYR A 484 N LEU A 350 SHEET 1 G 2 TYR A 367 MET A 368 0 SHEET 2 G 2 ILE A 427 MET A 428 1 O MET A 428 N TYR A 367 SHEET 1 H 2 VAL B 79 LYS B 82 0 SHEET 2 H 2 ILE B 89 ASP B 92 -1 O LEU B 90 N ILE B 81 SHEET 1 I 4 GLN B 204 ASP B 207 0 SHEET 2 I 4 ALA B 237 VAL B 240 1 O ILE B 238 N PHE B 206 SHEET 3 I 4 PHE B 363 ASN B 364 -1 O ASN B 364 N ALA B 237 SHEET 4 I 4 ALA B 345 VAL B 346 -1 N VAL B 346 O PHE B 363 SHEET 1 J 3 ARG B 252 LEU B 253 0 SHEET 2 J 3 LEU B 301 GLN B 304 -1 O GLN B 304 N ARG B 252 SHEET 3 J 3 GLU B 311 PHE B 313 -1 O PHE B 313 N LEU B 301 SHEET 1 K 2 GLY B 263 GLN B 265 0 SHEET 2 K 2 ILE B 271 GLY B 273 -1 O ARG B 272 N TYR B 264 SHEET 1 L 2 GLU B 322 THR B 324 0 SHEET 2 L 2 LYS B 339 TYR B 341 -1 O TRP B 340 N VAL B 323 SHEET 1 M 3 LEU B 356 PHE B 358 0 SHEET 2 M 3 LEU B 350 VAL B 353 -1 N VAL B 353 O LEU B 356 SHEET 3 M 3 PHE B 482 TYR B 484 -1 O PHE B 482 N GLU B 352 SHEET 1 N 2 TYR B 367 MET B 368 0 SHEET 2 N 2 ILE B 427 MET B 428 1 O MET B 428 N TYR B 367 LINK SG CYS A 194 FE HEM A 901 1555 1555 2.30 LINK SG CYS B 194 FE HEM B 901 1555 1555 2.40 CISPEP 1 SER A 480 PRO A 481 0 0.10 CISPEP 2 SER B 480 PRO B 481 0 -0.02 SITE 1 AC1 19 TRP A 188 ARG A 193 CYS A 194 SER A 236 SITE 2 AC1 19 PHE A 363 ASN A 364 GLY A 365 TRP A 366 SITE 3 AC1 19 GLU A 371 TRP A 457 TYR A 483 TYR A 485 SITE 4 AC1 19 H4B A 902 XXZ A 906 HOH A1314 HOH A1392 SITE 5 AC1 19 HOH A1439 HOH A1440 HOH A1442 SITE 1 AC2 13 SER A 112 MET A 114 ARG A 375 TRP A 455 SITE 2 AC2 13 ILE A 456 TRP A 457 PHE A 470 HIS A 471 SITE 3 AC2 13 HEM A 901 HOH A1343 HOH A1352 HOH A1440 SITE 4 AC2 13 HOH A1441 SITE 1 AC3 15 GLN A 257 ARG A 260 TYR A 341 PRO A 344 SITE 2 AC3 15 VAL A 346 GLY A 365 TRP A 366 TYR A 367 SITE 3 AC3 15 GLU A 371 ASP A 376 ARG A 382 HEM A 901 SITE 4 AC3 15 HOH A1328 HOH A1396 HOH A1442 SITE 1 AC4 17 TRP B 188 ARG B 193 CYS B 194 SER B 236 SITE 2 AC4 17 PHE B 363 ASN B 364 GLY B 365 TRP B 366 SITE 3 AC4 17 GLU B 371 TRP B 457 TYR B 483 TYR B 485 SITE 4 AC4 17 H4B B 902 XXZ B 907 HOH B1403 HOH B1413 SITE 5 AC4 17 HOH B1421 SITE 1 AC5 10 SER B 112 ARG B 375 TRP B 455 ILE B 456 SITE 2 AC5 10 TRP B 457 PHE B 470 HIS B 471 HEM B 901 SITE 3 AC5 10 HOH B1399 HOH B1412 SITE 1 AC6 12 GLN B 257 ARG B 260 TYR B 341 PRO B 344 SITE 2 AC6 12 VAL B 346 GLY B 365 TRP B 366 TYR B 367 SITE 3 AC6 12 GLU B 371 ASP B 376 ARG B 382 HEM B 901 CRYST1 213.935 213.935 117.025 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004674 0.002699 0.000000 0.00000 SCALE2 0.000000 0.005397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008545 0.00000