HEADER ISOMERASE 15-AUG-08 3E6E TITLE CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM E.FAECALIS COMPLEX WITH TITLE 2 CYCLOSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 1351; SOURCE 5 STRAIN: V583; SOURCE 6 GENE: ALR, EF_0849; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALR, SCP, ISOMERASE, PYRIDOXAL PHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.HWANG,A.PRIYADARSHI,E.H.LEE,M.W.SUNG REVDAT 4 01-NOV-23 3E6E 1 REMARK REVDAT 3 10-NOV-21 3E6E 1 REMARK SEQADV REVDAT 2 01-SEP-09 3E6E 1 JRNL REVDAT 1 18-AUG-09 3E6E 0 JRNL AUTH A.PRIYADARSHI,E.H.LEE,M.W.SUNG,K.H.NAM,W.H.LEE,E.E.KIM, JRNL AUTH 2 K.Y.HWANG JRNL TITL STRUCTURAL INSIGHTS INTO THE ALANINE RACEMASE FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1794 1030 2009 JRNL REFN ISSN 0006-3002 JRNL PMID 19328247 JRNL DOI 10.1016/J.BBAPAP.2009.03.006 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 35274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 50.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3E6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1000048932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25900 REMARK 200 R SYM FOR SHELL (I) : 0.31400 REMARK 200 FOR SHELL : 2.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3E5P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8K, CA(OAC)2, HEPES, SCP, REMARK 280 CYCLOHEXYL-METHYL-BETA-D-MALTOSIDE, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.29850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.09300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.29850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.09300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.46500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.29850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.09300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.46500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.29850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.09300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3P DCS C 372 O HOH C 374 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 31 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 GLY A 32 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 8 -1.74 -57.85 REMARK 500 PRO A 30 -3.16 -47.96 REMARK 500 GLU A 31 5.41 54.15 REMARK 500 LEU A 91 -31.90 -36.70 REMARK 500 ASP A 101 60.25 37.00 REMARK 500 PRO A 121 -58.24 -29.50 REMARK 500 GLU A 122 52.36 -118.55 REMARK 500 SER A 123 1.19 -65.21 REMARK 500 ASN A 124 0.36 49.65 REMARK 500 MET A 137 -29.15 107.30 REMARK 500 ARG A 139 -53.83 -126.69 REMARK 500 LYS A 159 1.04 81.12 REMARK 500 LEU A 162 -40.29 -139.98 REMARK 500 TRP A 163 75.49 64.07 REMARK 500 GLU A 197 155.21 157.61 REMARK 500 ASN A 231 106.01 -53.39 REMARK 500 PRO A 232 3.74 -56.64 REMARK 500 ASN A 235 18.92 -151.41 REMARK 500 ALA A 242 109.77 -58.59 REMARK 500 SER A 251 -160.10 -164.43 REMARK 500 ALA A 261 140.21 -39.19 REMARK 500 GLU A 269 38.54 78.81 REMARK 500 ALA A 275 -166.15 -166.83 REMARK 500 GLU A 323 -150.89 -177.23 REMARK 500 ASP A 337 111.56 -167.83 REMARK 500 GLU A 352 31.43 70.28 REMARK 500 THR A 353 -153.42 -139.61 REMARK 500 GLU B 31 72.43 -69.35 REMARK 500 ALA B 48 -70.42 -42.82 REMARK 500 ASP B 101 77.67 42.60 REMARK 500 LEU B 119 55.81 -115.32 REMARK 500 GLU B 122 -136.16 49.39 REMARK 500 ARG B 139 -77.32 -95.01 REMARK 500 TRP B 163 85.41 -66.37 REMARK 500 ALA B 193 -9.65 -56.57 REMARK 500 GLU B 196 -61.32 -97.39 REMARK 500 PRO B 199 -167.23 -78.51 REMARK 500 VAL B 204 15.32 -144.55 REMARK 500 HIS B 213 50.33 -152.77 REMARK 500 ASN B 235 2.23 -152.15 REMARK 500 THR B 353 -152.06 -123.02 REMARK 500 PHE B 362 109.09 -53.75 REMARK 500 HIS C 6 46.34 -96.05 REMARK 500 PRO C 8 -9.96 -57.17 REMARK 500 LYS C 57 -9.86 -52.20 REMARK 500 GLN C 118 33.14 35.62 REMARK 500 GLU C 160 2.59 -67.95 REMARK 500 PRO C 199 -177.42 -68.34 REMARK 500 VAL C 204 -18.71 -144.65 REMARK 500 HIS C 213 65.63 -154.04 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 159 GLU A 160 147.69 REMARK 500 LEU B 29 PRO B 30 -64.33 REMARK 500 SER B 123 ASN B 124 147.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCS A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCS B 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCS C 372 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E5P RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEX WITH CYCLOSERINE DBREF 3E6E A 1 371 UNP Q837J0 Q837J0_ENTFA 1 371 DBREF 3E6E B 1 371 UNP Q837J0 Q837J0_ENTFA 1 371 DBREF 3E6E C 1 371 UNP Q837J0 Q837J0_ENTFA 1 371 SEQADV 3E6E PRO A 329 UNP Q837J0 SER 329 ENGINEERED MUTATION SEQADV 3E6E PRO B 329 UNP Q837J0 SER 329 ENGINEERED MUTATION SEQADV 3E6E PRO C 329 UNP Q837J0 SER 329 ENGINEERED MUTATION SEQRES 1 A 371 MET VAL VAL GLY TRP HIS ARG PRO THR ARG LEU HIS ILE SEQRES 2 A 371 ASP THR GLN ALA ILE THR GLU ASN VAL GLN LYS GLU CYS SEQRES 3 A 371 GLN ARG LEU PRO GLU GLY THR ALA LEU PHE ALA VAL VAL SEQRES 4 A 371 LYS ALA ASN GLY TYR GLY HIS GLY ALA VAL GLU SER ALA SEQRES 5 A 371 LYS ALA ALA LYS LYS GLY GLY ALA THR GLY PHE CYS VAL SEQRES 6 A 371 ALA LEU LEU ASP GLU ALA ILE GLU LEU ARG GLU ALA GLY SEQRES 7 A 371 VAL GLN ASP PRO ILE LEU ILE LEU SER VAL VAL ASP LEU SEQRES 8 A 371 ALA TYR VAL PRO LEU LEU ILE GLN TYR ASP LEU SER VAL SEQRES 9 A 371 THR VAL ALA THR GLN GLU TRP LEU GLU ALA ALA LEU GLN SEQRES 10 A 371 GLN LEU THR PRO GLU SER ASN THR PRO LEU ARG VAL HIS SEQRES 11 A 371 LEU LYS VAL ASP THR GLY MET GLY ARG ILE GLY PHE LEU SEQRES 12 A 371 THR PRO GLU GLU THR LYS GLN ALA VAL ARG PHE VAL GLN SEQRES 13 A 371 SER HIS LYS GLU PHE LEU TRP GLU GLY ILE PHE THR HIS SEQRES 14 A 371 PHE SER THR ALA ASP GLU ILE ASP THR SER TYR PHE GLU SEQRES 15 A 371 LYS GLN ALA GLY ARG PHE LYS ALA VAL LEU ALA VAL LEU SEQRES 16 A 371 GLU GLU LEU PRO ARG TYR VAL HIS VAL SER ASN SER ALA SEQRES 17 A 371 THR ALA LEU TRP HIS PRO ASP VAL PRO GLY ASN MET ILE SEQRES 18 A 371 ARG TYR GLY VAL ALA MET TYR GLY LEU ASN PRO SER GLY SEQRES 19 A 371 ASN LYS LEU ALA PRO SER TYR ALA LEU LYS PRO ALA LEU SEQRES 20 A 371 ARG LEU THR SER GLU LEU ILE HIS VAL LYS ARG LEU ALA SEQRES 21 A 371 ALA GLY GLU GLY ILE GLY TYR GLY GLU THR TYR VAL THR SEQRES 22 A 371 GLU ALA GLU GLU TRP ILE GLY THR VAL PRO ILE GLY TYR SEQRES 23 A 371 ALA ASP GLY TRP LEU ARG HIS LEU GLN GLY PHE THR VAL SEQRES 24 A 371 LEU VAL ASN GLY LYS ARG CYS GLU ILE VAL GLY ARG VAL SEQRES 25 A 371 CYS MET ASP GLN CYS MET ILE ARG LEU ALA GLU GLU VAL SEQRES 26 A 371 PRO VAL GLY PRO VAL VAL THR LEU VAL GLY LYS ASP GLY SEQRES 27 A 371 ASN GLU GLU ASN THR LEU GLN MET VAL ALA GLU LYS LEU SEQRES 28 A 371 GLU THR ILE HIS TYR GLU VAL ALA CYS THR PHE SER GLN SEQRES 29 A 371 ARG ILE PRO ARG GLU TYR ASN SEQRES 1 B 371 MET VAL VAL GLY TRP HIS ARG PRO THR ARG LEU HIS ILE SEQRES 2 B 371 ASP THR GLN ALA ILE THR GLU ASN VAL GLN LYS GLU CYS SEQRES 3 B 371 GLN ARG LEU PRO GLU GLY THR ALA LEU PHE ALA VAL VAL SEQRES 4 B 371 LYS ALA ASN GLY TYR GLY HIS GLY ALA VAL GLU SER ALA SEQRES 5 B 371 LYS ALA ALA LYS LYS GLY GLY ALA THR GLY PHE CYS VAL SEQRES 6 B 371 ALA LEU LEU ASP GLU ALA ILE GLU LEU ARG GLU ALA GLY SEQRES 7 B 371 VAL GLN ASP PRO ILE LEU ILE LEU SER VAL VAL ASP LEU SEQRES 8 B 371 ALA TYR VAL PRO LEU LEU ILE GLN TYR ASP LEU SER VAL SEQRES 9 B 371 THR VAL ALA THR GLN GLU TRP LEU GLU ALA ALA LEU GLN SEQRES 10 B 371 GLN LEU THR PRO GLU SER ASN THR PRO LEU ARG VAL HIS SEQRES 11 B 371 LEU LYS VAL ASP THR GLY MET GLY ARG ILE GLY PHE LEU SEQRES 12 B 371 THR PRO GLU GLU THR LYS GLN ALA VAL ARG PHE VAL GLN SEQRES 13 B 371 SER HIS LYS GLU PHE LEU TRP GLU GLY ILE PHE THR HIS SEQRES 14 B 371 PHE SER THR ALA ASP GLU ILE ASP THR SER TYR PHE GLU SEQRES 15 B 371 LYS GLN ALA GLY ARG PHE LYS ALA VAL LEU ALA VAL LEU SEQRES 16 B 371 GLU GLU LEU PRO ARG TYR VAL HIS VAL SER ASN SER ALA SEQRES 17 B 371 THR ALA LEU TRP HIS PRO ASP VAL PRO GLY ASN MET ILE SEQRES 18 B 371 ARG TYR GLY VAL ALA MET TYR GLY LEU ASN PRO SER GLY SEQRES 19 B 371 ASN LYS LEU ALA PRO SER TYR ALA LEU LYS PRO ALA LEU SEQRES 20 B 371 ARG LEU THR SER GLU LEU ILE HIS VAL LYS ARG LEU ALA SEQRES 21 B 371 ALA GLY GLU GLY ILE GLY TYR GLY GLU THR TYR VAL THR SEQRES 22 B 371 GLU ALA GLU GLU TRP ILE GLY THR VAL PRO ILE GLY TYR SEQRES 23 B 371 ALA ASP GLY TRP LEU ARG HIS LEU GLN GLY PHE THR VAL SEQRES 24 B 371 LEU VAL ASN GLY LYS ARG CYS GLU ILE VAL GLY ARG VAL SEQRES 25 B 371 CYS MET ASP GLN CYS MET ILE ARG LEU ALA GLU GLU VAL SEQRES 26 B 371 PRO VAL GLY PRO VAL VAL THR LEU VAL GLY LYS ASP GLY SEQRES 27 B 371 ASN GLU GLU ASN THR LEU GLN MET VAL ALA GLU LYS LEU SEQRES 28 B 371 GLU THR ILE HIS TYR GLU VAL ALA CYS THR PHE SER GLN SEQRES 29 B 371 ARG ILE PRO ARG GLU TYR ASN SEQRES 1 C 371 MET VAL VAL GLY TRP HIS ARG PRO THR ARG LEU HIS ILE SEQRES 2 C 371 ASP THR GLN ALA ILE THR GLU ASN VAL GLN LYS GLU CYS SEQRES 3 C 371 GLN ARG LEU PRO GLU GLY THR ALA LEU PHE ALA VAL VAL SEQRES 4 C 371 LYS ALA ASN GLY TYR GLY HIS GLY ALA VAL GLU SER ALA SEQRES 5 C 371 LYS ALA ALA LYS LYS GLY GLY ALA THR GLY PHE CYS VAL SEQRES 6 C 371 ALA LEU LEU ASP GLU ALA ILE GLU LEU ARG GLU ALA GLY SEQRES 7 C 371 VAL GLN ASP PRO ILE LEU ILE LEU SER VAL VAL ASP LEU SEQRES 8 C 371 ALA TYR VAL PRO LEU LEU ILE GLN TYR ASP LEU SER VAL SEQRES 9 C 371 THR VAL ALA THR GLN GLU TRP LEU GLU ALA ALA LEU GLN SEQRES 10 C 371 GLN LEU THR PRO GLU SER ASN THR PRO LEU ARG VAL HIS SEQRES 11 C 371 LEU LYS VAL ASP THR GLY MET GLY ARG ILE GLY PHE LEU SEQRES 12 C 371 THR PRO GLU GLU THR LYS GLN ALA VAL ARG PHE VAL GLN SEQRES 13 C 371 SER HIS LYS GLU PHE LEU TRP GLU GLY ILE PHE THR HIS SEQRES 14 C 371 PHE SER THR ALA ASP GLU ILE ASP THR SER TYR PHE GLU SEQRES 15 C 371 LYS GLN ALA GLY ARG PHE LYS ALA VAL LEU ALA VAL LEU SEQRES 16 C 371 GLU GLU LEU PRO ARG TYR VAL HIS VAL SER ASN SER ALA SEQRES 17 C 371 THR ALA LEU TRP HIS PRO ASP VAL PRO GLY ASN MET ILE SEQRES 18 C 371 ARG TYR GLY VAL ALA MET TYR GLY LEU ASN PRO SER GLY SEQRES 19 C 371 ASN LYS LEU ALA PRO SER TYR ALA LEU LYS PRO ALA LEU SEQRES 20 C 371 ARG LEU THR SER GLU LEU ILE HIS VAL LYS ARG LEU ALA SEQRES 21 C 371 ALA GLY GLU GLY ILE GLY TYR GLY GLU THR TYR VAL THR SEQRES 22 C 371 GLU ALA GLU GLU TRP ILE GLY THR VAL PRO ILE GLY TYR SEQRES 23 C 371 ALA ASP GLY TRP LEU ARG HIS LEU GLN GLY PHE THR VAL SEQRES 24 C 371 LEU VAL ASN GLY LYS ARG CYS GLU ILE VAL GLY ARG VAL SEQRES 25 C 371 CYS MET ASP GLN CYS MET ILE ARG LEU ALA GLU GLU VAL SEQRES 26 C 371 PRO VAL GLY PRO VAL VAL THR LEU VAL GLY LYS ASP GLY SEQRES 27 C 371 ASN GLU GLU ASN THR LEU GLN MET VAL ALA GLU LYS LEU SEQRES 28 C 371 GLU THR ILE HIS TYR GLU VAL ALA CYS THR PHE SER GLN SEQRES 29 C 371 ARG ILE PRO ARG GLU TYR ASN HET DCS A 372 22 HET DCS B 372 22 HET DCS C 372 22 HETNAM DCS D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 DCS YLMETHYL]-N,O-CYCLOSERYLAMIDE HETSYN DCS D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE FORMUL 4 DCS 3(C11 H16 N3 O7 P) FORMUL 7 HOH *130(H2 O) HELIX 1 1 ASP A 14 LEU A 29 1 16 HELIX 2 2 VAL A 39 GLY A 45 1 7 HELIX 3 3 GLY A 47 LYS A 57 1 11 HELIX 4 4 LEU A 67 ALA A 77 1 11 HELIX 5 5 ASP A 90 ALA A 92 5 3 HELIX 6 6 TYR A 93 TYR A 100 1 8 HELIX 7 7 THR A 108 GLN A 118 1 11 HELIX 8 8 THR A 144 LYS A 159 1 16 HELIX 9 9 THR A 178 VAL A 194 1 17 HELIX 10 10 ASN A 206 HIS A 213 1 8 HELIX 11 11 GLY A 224 GLY A 229 5 6 HELIX 12 12 GLY A 266 THR A 270 5 5 HELIX 13 13 LEU A 291 GLN A 295 5 5 HELIX 14 14 THR A 343 GLU A 352 1 10 HELIX 15 15 ILE A 354 PHE A 362 1 9 HELIX 16 16 ASP B 14 LEU B 29 1 16 HELIX 17 17 VAL B 39 GLY B 45 1 7 HELIX 18 18 GLY B 47 GLY B 59 1 13 HELIX 19 19 LEU B 67 ALA B 77 1 11 HELIX 20 20 ASP B 90 VAL B 94 5 5 HELIX 21 21 PRO B 95 TYR B 100 1 6 HELIX 22 22 THR B 108 LEU B 116 1 9 HELIX 23 23 THR B 144 SER B 157 1 14 HELIX 24 24 THR B 178 ALA B 193 1 16 HELIX 25 25 ASN B 206 HIS B 213 1 8 HELIX 26 26 GLY B 224 GLY B 229 5 6 HELIX 27 27 GLY B 266 THR B 270 5 5 HELIX 28 28 LEU B 291 GLN B 295 5 5 HELIX 29 29 THR B 343 LEU B 351 1 9 HELIX 30 30 ILE B 354 PHE B 362 1 9 HELIX 31 31 ASP C 14 GLN C 27 1 14 HELIX 32 32 VAL C 39 HIS C 46 1 8 HELIX 33 33 GLY C 47 LYS C 57 1 11 HELIX 34 34 LEU C 67 ALA C 77 1 11 HELIX 35 35 ASP C 90 ALA C 92 5 3 HELIX 36 36 TYR C 93 TYR C 100 1 8 HELIX 37 37 THR C 108 GLN C 117 1 10 HELIX 38 38 THR C 144 SER C 157 1 14 HELIX 39 39 THR C 178 ALA C 193 1 16 HELIX 40 40 ASN C 206 HIS C 213 1 8 HELIX 41 41 GLY C 224 GLY C 229 5 6 HELIX 42 42 GLY C 266 THR C 270 5 5 HELIX 43 43 LEU C 291 GLN C 295 5 5 HELIX 44 44 THR C 343 GLU C 352 1 10 HELIX 45 45 ILE C 354 PHE C 362 1 9 SHEET 1 A 7 HIS A 255 LEU A 259 0 SHEET 2 A 7 GLU A 277 VAL A 282 -1 O GLU A 277 N LEU A 259 SHEET 3 A 7 CYS A 317 LEU A 321 -1 O ILE A 319 N GLY A 280 SHEET 4 A 7 LYS A 304 VAL A 309 -1 N GLU A 307 O ARG A 320 SHEET 5 A 7 THR A 298 VAL A 301 -1 N VAL A 299 O CYS A 306 SHEET 6 A 7 VAL A 330 ASP A 337 -1 O THR A 332 N LEU A 300 SHEET 7 A 7 GLU A 340 ASN A 342 -1 O ASN A 342 N GLY A 335 SHEET 1 B 9 HIS A 255 LEU A 259 0 SHEET 2 B 9 GLU A 277 VAL A 282 -1 O GLU A 277 N LEU A 259 SHEET 3 B 9 CYS A 317 LEU A 321 -1 O ILE A 319 N GLY A 280 SHEET 4 B 9 LYS A 304 VAL A 309 -1 N GLU A 307 O ARG A 320 SHEET 5 B 9 THR A 298 VAL A 301 -1 N VAL A 299 O CYS A 306 SHEET 6 B 9 VAL A 330 ASP A 337 -1 O THR A 332 N LEU A 300 SHEET 7 B 9 LEU A 249 GLU A 252 -1 N SER A 251 O VAL A 331 SHEET 8 B 9 ARG A 10 HIS A 12 -1 N ARG A 10 O THR A 250 SHEET 9 B 9 ARG A 368 GLU A 369 1 O GLU A 369 N LEU A 11 SHEET 1 C 8 TYR A 201 HIS A 203 0 SHEET 2 C 8 GLY A 165 PHE A 167 1 N ILE A 166 O HIS A 203 SHEET 3 C 8 VAL A 129 LYS A 132 1 N LEU A 131 O GLY A 165 SHEET 4 C 8 SER A 103 VAL A 106 1 N VAL A 104 O HIS A 130 SHEET 5 C 8 ILE A 83 ILE A 85 1 N ILE A 85 O SER A 103 SHEET 6 C 8 GLY A 62 VAL A 65 1 N PHE A 63 O LEU A 84 SHEET 7 C 8 ALA A 34 VAL A 38 1 N ALA A 37 O GLY A 62 SHEET 8 C 8 MET A 220 TYR A 223 1 O ILE A 221 N PHE A 36 SHEET 1 D 2 GLY A 264 ILE A 265 0 SHEET 2 D 2 TYR A 271 VAL A 272 -1 O TYR A 271 N ILE A 265 SHEET 1 E 5 GLU B 340 ASN B 342 0 SHEET 2 E 5 VAL B 330 ASP B 337 -1 N ASP B 337 O GLU B 340 SHEET 3 E 5 LEU B 247 GLU B 252 -1 N SER B 251 O VAL B 331 SHEET 4 E 5 ARG B 10 ILE B 13 -1 N ARG B 10 O THR B 250 SHEET 5 E 5 ARG B 368 TYR B 370 1 O GLU B 369 N LEU B 11 SHEET 1 F 9 ALA B 34 VAL B 38 0 SHEET 2 F 9 ALA B 60 VAL B 65 1 O THR B 61 N LEU B 35 SHEET 3 F 9 ILE B 83 ILE B 85 1 O LEU B 84 N PHE B 63 SHEET 4 F 9 SER B 103 VAL B 106 1 O SER B 103 N ILE B 85 SHEET 5 F 9 LEU B 127 LYS B 132 1 O ARG B 128 N VAL B 104 SHEET 6 F 9 PHE B 161 PHE B 167 1 O GLY B 165 N LEU B 131 SHEET 7 F 9 TYR B 201 SER B 205 1 O TYR B 201 N GLU B 164 SHEET 8 F 9 MET B 220 TYR B 223 1 O ARG B 222 N SER B 205 SHEET 9 F 9 ALA B 34 VAL B 38 1 N VAL B 38 O TYR B 223 SHEET 1 G 5 HIS B 255 LEU B 259 0 SHEET 2 G 5 GLU B 277 VAL B 282 -1 O THR B 281 N HIS B 255 SHEET 3 G 5 CYS B 317 LEU B 321 -1 O LEU B 321 N TRP B 278 SHEET 4 G 5 LYS B 304 VAL B 309 -1 N VAL B 309 O MET B 318 SHEET 5 G 5 THR B 298 VAL B 301 -1 N VAL B 299 O CYS B 306 SHEET 1 H 2 GLY B 264 ILE B 265 0 SHEET 2 H 2 TYR B 271 VAL B 272 -1 O TYR B 271 N ILE B 265 SHEET 1 I 5 GLU C 340 ASN C 342 0 SHEET 2 I 5 VAL C 330 ASP C 337 -1 N ASP C 337 O GLU C 340 SHEET 3 I 5 LEU C 247 GLU C 252 -1 N LEU C 249 O LEU C 333 SHEET 4 I 5 ARG C 10 ILE C 13 -1 N ARG C 10 O THR C 250 SHEET 5 I 5 ARG C 368 TYR C 370 1 O GLU C 369 N LEU C 11 SHEET 1 J 9 ALA C 34 VAL C 38 0 SHEET 2 J 9 GLY C 62 VAL C 65 1 O GLY C 62 N ALA C 37 SHEET 3 J 9 ILE C 83 ILE C 85 1 O LEU C 84 N PHE C 63 SHEET 4 J 9 SER C 103 VAL C 106 1 O SER C 103 N ILE C 83 SHEET 5 J 9 LEU C 127 LYS C 132 1 O HIS C 130 N VAL C 104 SHEET 6 J 9 PHE C 161 PHE C 167 1 O PHE C 167 N LEU C 131 SHEET 7 J 9 TYR C 201 SER C 205 1 O TYR C 201 N GLU C 164 SHEET 8 J 9 MET C 220 TYR C 223 1 O ARG C 222 N SER C 205 SHEET 9 J 9 ALA C 34 VAL C 38 1 N PHE C 36 O ILE C 221 SHEET 1 K 5 VAL C 256 LEU C 259 0 SHEET 2 K 5 GLU C 277 VAL C 282 -1 O GLU C 277 N LEU C 259 SHEET 3 K 5 CYS C 317 LEU C 321 -1 O LEU C 321 N TRP C 278 SHEET 4 K 5 LYS C 304 VAL C 309 -1 N VAL C 309 O MET C 318 SHEET 5 K 5 THR C 298 VAL C 301 -1 N VAL C 301 O LYS C 304 SHEET 1 L 2 GLY C 264 ILE C 265 0 SHEET 2 L 2 TYR C 271 VAL C 272 -1 O TYR C 271 N ILE C 265 SITE 1 AC1 16 VAL A 38 LYS A 40 TYR A 44 LEU A 86 SITE 2 AC1 16 ARG A 139 HIS A 169 SER A 207 ARG A 222 SITE 3 AC1 16 GLY A 224 VAL A 225 TYR A 356 HOH A 374 SITE 4 AC1 16 TYR C 267 TYR C 286 CYS C 313 MET C 314 SITE 1 AC2 13 VAL B 38 LYS B 40 TYR B 44 ARG B 139 SITE 2 AC2 13 HIS B 169 SER B 207 ARG B 222 GLY B 224 SITE 3 AC2 13 VAL B 225 TYR B 267 TYR B 286 MET B 314 SITE 4 AC2 13 TYR B 356 SITE 1 AC3 16 TYR A 267 TYR A 286 CYS A 313 MET A 314 SITE 2 AC3 16 LYS C 40 TYR C 44 LEU C 86 ARG C 139 SITE 3 AC3 16 HIS C 169 ASN C 206 SER C 207 ARG C 222 SITE 4 AC3 16 GLY C 224 VAL C 225 TYR C 356 HOH C 374 CRYST1 94.597 156.186 146.930 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006806 0.00000